Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 0.0e+00 1697.9 869 100.0
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 0.0e+00 1366.7 911 79.7
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.2e-293 1012.3 825 66.5
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.3e-289 998.4 779 68.4
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 7.5e-273 944.1 777 66.0
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 7.8e-270 934.1 808 63.9
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 2.0e-265 919.5 823 62.2
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 3.9e-245 852.0 841 58.1
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 5.8e-225 785.0 823 55.5
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 7.4e-212 741.5 783 54.4
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 8.2e-195 684.9 846 49.1
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.8e-192 676.0 833 48.9
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 5.0e-192 675.6 821 48.1
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.2e-191 672.9 875 47.4
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 2.3e-189 666.8 821 47.6
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 1.1e-186 657.9 779 49.9
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.5e-185 654.1 833 47.8
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 4.5e-185 652.5 819 48.1
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 7.7e-185 651.7 840 47.4
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 2.9e-184 649.8 809 48.1
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.9e-184 649.8 782 48.2
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 1.1e-183 647.9 822 47.1
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 7.2e-183 645.2 863 46.9
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.2e-182 644.4 833 46.7
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 1.2e-182 644.4 806 47.8
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 2.1e-182 643.7 839 47.4
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 4.7e-182 642.5 840 46.8
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 4.7e-182 642.5 798 47.7
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 8.8e-181 638.3 835 46.0
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.3e-179 634.4 835 45.5
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 1.3e-179 634.4 835 45.5
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.4e-178 630.9 831 47.9
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 2.0e-177 627.1 821 47.3
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.3e-176 624.4 813 48.1
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.1e-174 617.1 831 46.5
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 8.0e-174 615.1 824 46.7
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 8.3e-171 605.1 834 45.9
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 3.1e-170 603.2 854 45.2
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 2.7e-169 600.1 867 44.9
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 4.5e-169 599.4 834 46.3
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 5.9e-169 599.0 827 45.3
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.4e-165 587.8 807 45.7
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 5.2e-165 585.9 837 42.9
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 1.2e-164 584.7 834 45.2
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 7.5e-164 582.0 826 46.4
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 4.9e-163 579.3 847 42.7
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 1.4e-162 577.8 741 50.2
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 1.4e-162 577.8 852 44.2
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 4.1e-162 576.2 987 39.0
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 7.2e-159 565.5 831 42.7
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 1.4e-157 561.2 832 44.4
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 3.4e-156 556.6 830 43.7
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 1.3e-155 554.7 980 38.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 2.9e-155 553.5 878 40.3
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.4e-154 551.2 828 43.8
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.4e-154 551.2 814 42.1
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 1.2e-153 548.1 822 42.8
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 1.1e-151 541.6 934 39.7
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.5e-151 541.2 918 40.3
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.9e-151 540.8 840 42.5
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 7.3e-151 538.9 800 43.1
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 7.3e-151 538.9 837 40.7
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 4.7e-150 536.2 833 41.5
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 6.2e-150 535.8 800 43.1
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 4.0e-149 533.1 830 40.2
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 4.0e-149 533.1 1023 37.0
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 5.2e-149 532.7 839 41.2
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 2.6e-148 530.4 791 42.7
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 2.9e-147 526.9 845 40.2
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 6.0e-145 519.2 827 41.6
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 1.0e-144 518.5 844 40.6
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 3.9e-144 516.5 858 40.7
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 4.3e-143 513.1 827 41.4
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 2.8e-142 510.4 734 47.3
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 4.0e-141 506.5 842 41.4
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 6.4e-139 499.2 909 38.7
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.4e-138 498.0 829 38.1
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 4.1e-138 496.5 812 41.1
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 3.5e-137 493.4 830 38.3
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 1.1e-135 488.4 812 39.8
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 1.9e-135 487.6 807 39.3
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 3.6e-134 483.4 850 39.1
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 3.1e-133 480.3 847 39.3
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 3.1e-133 480.3 839 38.3
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 1.3e-131 474.9 810 39.3
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.9e-130 471.1 550 49.3
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 4.1e-130 469.9 969 36.4
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 5.4e-130 469.5 808 37.0
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 2.7e-129 467.2 810 38.4
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 3.6e-126 456.8 647 42.5
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 2.1e-121 441.0 653 44.9
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 3.8e-115 420.2 819 36.8
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 3.0e-112 410.6 808 37.1
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 5.6e-111 406.4 807 35.7
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.7e-107 394.8 798 35.3
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 4.2e-106 390.2 819 34.9
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 7.1e-106 389.4 498 46.8
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.0e-104 384.0 894 34.3
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.3e-103 380.6 408 54.4
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 6.9e-101 372.9 340 59.1
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.4e-100 370.5 704 38.5
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 5.7e-95 353.2 620 37.3
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 8.2e-94 349.4 585 39.5
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 4.3e-87 327.0 821 32.2
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 6.3e-86 323.2 865 31.9
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 1.2e-84 318.9 517 39.8
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 2.7e-81 307.8 656 34.0
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.0e-80 305.8 745 35.6
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.3e-75 288.9 840 30.6
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 2.2e-75 288.1 795 31.3
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 1.6e-73 282.0 800 28.4
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 7.9e-73 279.6 560 37.3
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 2.2e-70 271.6 804 29.7
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 7.7e-68 263.1 447 38.5
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 1.7e-67 261.9 481 37.2
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 3.8e-67 260.8 495 35.4
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 8.5e-67 259.6 488 37.1
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 1.9e-66 258.5 475 37.3
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 9.4e-66 256.1 496 36.7
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 8.0e-65 253.1 487 38.6
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 8.8e-64 249.6 490 37.6
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.5e-63 248.8 825 31.0
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 7.5e-63 246.5 475 36.0
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 6.3e-62 243.4 834 27.9
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 8.2e-62 243.0 461 37.5
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 8.2e-62 243.0 461 37.5
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.4e-61 242.3 484 37.6
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 7.0e-61 240.0 699 30.8
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 9.1e-61 239.6 563 32.7
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 9.1e-61 239.6 483 37.1
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.5e-60 237.3 478 36.6
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.2e-59 235.0 632 32.1
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 8.5e-59 233.0 418 38.0
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.5e-58 232.3 679 30.5
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.9e-58 231.9 306 50.7
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 9.8e-55 219.5 471 36.3
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 1.3e-54 219.2 675 31.4
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 2.2e-54 218.4 586 33.4
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 1.7e-51 208.8 600 32.0
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 8.5e-51 206.5 600 31.8
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 4.2e-50 204.1 571 31.0
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 5.0e-43 180.6 513 30.8
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 6.1e-41 173.7 549 28.8
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.1e-37 162.9 841 24.3
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 4.6e-36 157.5 472 26.9
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 3.3e-34 151.4 270 38.9
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 5.6e-34 150.6 198 48.0
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 5.6e-34 150.6 90 73.3
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 4.4e-31 141.0 165 50.9
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 4.6e-28 131.0 91 64.8
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 4.4e-23 114.4 745 22.7
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.7e-22 112.5 181 35.4
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.7e-22 112.5 100 57.0
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 6.6e-19 100.5 425 28.2
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 8.1e-17 93.6 415 27.2
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.6e-15 88.6 115 33.9
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 1.9e-10 72.4 69 53.6
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 1.2e-09 69.7 79 45.6
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.8e-09 68.6 165 27.9
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-08 64.7 91 35.2
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 2.9e-06 58.5 50 56.0
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 2.9e-06 58.5 108 34.3
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 6.4e-06 57.4 62 41.9


User provided reference genes

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