Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 0.0e+00 1701.8 901 100.0
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 5.1e-216 755.4 466 83.0
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 1.4e-205 720.7 451 80.3
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 2.0e-204 716.8 451 79.8
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 7.4e-199 698.4 454 77.8
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 1.6e-185 654.1 452 72.3
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 2.8e-182 643.3 452 71.2
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 2.4e-181 640.2 453 70.6
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 1.6e-180 637.5 420 74.8
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 3.8e-179 632.9 472 72.2
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 3.2e-178 629.8 469 68.0
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 1.3e-174 617.8 454 69.8
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 2.2e-174 617.1 434 70.3
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 5.4e-173 612.5 454 68.1
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 4.5e-172 609.4 455 68.4
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 4.5e-172 609.4 454 68.3
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 7.7e-172 608.6 452 66.2
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 1.3e-171 607.8 434 69.8
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 5.0e-171 605.9 454 69.2
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 1.1e-170 604.7 434 69.4
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 2.5e-170 603.6 454 65.6
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 3.3e-170 603.2 441 68.5
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 1.4e-168 597.8 452 67.5
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 2.3e-168 597.0 454 68.3
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 4.0e-168 596.3 432 69.7
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 5.2e-168 595.9 452 66.4
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 1.2e-167 594.7 429 69.2
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.0e-167 594.0 454 67.6
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 5.7e-167 592.4 452 67.0
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 7.5e-167 592.0 454 67.8
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 9.8e-167 591.7 422 70.4
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 1.7e-166 590.9 436 68.6
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 2.2e-166 590.5 431 68.2
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 2.2e-166 590.5 452 65.7
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 1.4e-165 587.8 451 65.2
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 1.4e-165 587.8 454 66.5
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 3.2e-165 586.6 452 64.6
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 9.2e-165 585.1 452 64.6
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 9.2e-165 585.1 452 65.9
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 1.2e-164 584.7 454 63.9
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 3.5e-164 583.2 399 74.2
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 5.9e-164 582.4 432 68.5
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 7.8e-164 582.0 431 67.1
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.3e-163 581.3 438 71.9
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 3.9e-163 579.7 454 63.9
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.1e-162 578.2 434 67.1
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 1.5e-162 577.8 425 65.2
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 5.6e-162 575.9 457 63.5
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 9.5e-162 575.1 434 65.9
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 2.1e-161 573.9 446 66.1
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 5.2e-160 569.3 437 65.2
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 8.9e-160 568.5 456 63.6
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 1.2e-159 568.2 451 63.6
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 3.4e-159 566.6 456 64.7
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 1.4e-157 561.2 417 68.1
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 2.4e-157 560.5 465 63.2
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 9.2e-157 558.5 410 68.8
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 1.6e-156 557.8 423 66.7
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 1.3e-155 554.7 430 64.9
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 1.1e-154 551.6 428 67.1
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 2.5e-154 550.4 429 64.8
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 4.3e-154 549.7 443 64.1
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 1.2e-153 548.1 460 63.0
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 1.6e-153 547.7 427 65.1
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 2.1e-153 547.4 445 64.0
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 2.3e-147 527.3 416 63.5
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 2.5e-146 523.9 430 64.4
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 7.3e-146 522.3 402 66.7
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 1.1e-144 518.5 407 65.4
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 1.1e-144 518.5 445 60.7
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 1.5e-143 514.6 414 64.3
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 1.1e-141 508.4 426 63.1
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 7.1e-141 505.8 426 62.7
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 9.2e-141 505.4 396 63.4
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 1.2e-140 505.0 436 59.6
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 1.6e-140 504.6 426 62.9
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 1.3e-139 501.5 426 62.9
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 3.0e-139 500.4 512 55.1
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 1.1e-136 491.9 458 59.2
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 1.3e-134 485.0 739 41.8
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 1.3e-134 485.0 353 68.6
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 6.4e-134 482.6 407 60.0
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 2.3e-131 474.2 391 60.1
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 1.3e-129 468.4 395 59.7
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 6.4e-126 456.1 431 55.7
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 1.1e-122 445.3 377 63.7
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 4.3e-122 443.4 335 67.8
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 6.2e-121 439.5 400 61.5
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 1.1e-120 438.7 318 67.9
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 6.9e-120 436.0 331 64.7
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 1.3e-115 421.8 310 69.0
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 3.4e-111 407.1 307 65.5
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 1.7e-110 404.8 417 50.1
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 1.8e-104 384.8 409 50.1
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 1.2e-103 382.1 365 53.4
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 3.4e-103 380.6 306 63.7
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 7.6e-103 379.4 368 49.2
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 1.6e-97 361.7 243 72.8
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 5.3e-96 356.7 282 63.5
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 5.5e-93 346.7 402 47.3
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 7.2e-93 346.3 290 61.7
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 1.5e-87 328.6 309 56.3
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 8.8e-83 312.8 352 50.0
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.6e-71 274.6 231 61.0
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.1e-69 269.2 435 39.8
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 2.3e-67 261.5 173 68.8
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 2.3e-67 261.5 217 61.8
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 1.1e-64 252.7 209 58.9
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 4.4e-58 230.7 207 58.0
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 3.0e-51 208.0 188 59.0
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 7.5e-50 203.4 147 72.8
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 1.1e-48 199.5 135 71.1
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 2.2e-41 175.3 212 46.7
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.9e-40 172.2 170 54.7
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 1.7e-38 165.6 131 63.4
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 1.8e-35 155.6 126 59.5
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 3.7e-33 147.9 103 69.9
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 1.9e-29 135.6 122 54.9
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 2.4e-24 118.6 105 50.5
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 3.1e-19 101.7 75 68.0
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 4.0e-19 101.3 397 24.7
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 1.7e-17 95.9 388 24.7
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 3.8e-17 94.7 392 23.7
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 3.8e-17 94.7 150 41.3
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 1.1e-13 83.2 58 72.4
Rhsim06G0134700 Rhododendron simsii HOM05D019536 ORTHO05D009356 2.6e-10 72.0 57 59.6
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 1.7e-09 69.3 391 22.8
Rhsim03G0104400 Rhododendron simsii HOM05D019536 ORTHO05D338757 1.1e-08 66.6 115 34.8
Rhsim10G0173700 Rhododendron simsii HOM05D019536 ORTHO05D009356 1.1e-08 66.6 49 55.1
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 4.2e-08 64.7 46 67.4
vmacro23270 Vaccinium macrocarpon HOM05D000991 ORTHO05D000848 6.6e-06 57.4 57 56.1


User provided reference genes

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