Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 1.9e-181 639.0 319 100.0
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 9.8e-138 493.8 358 75.1
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 3.3e-133 478.8 310 79.4
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 1.4e-120 436.8 292 75.7
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 1.7e-113 413.3 284 71.5
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 6.0e-103 378.3 300 65.3
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 7.9e-103 377.9 291 64.9
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 9.0e-99 364.4 253 70.0
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 7.6e-98 361.3 282 63.8
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 1.3e-97 360.5 267 67.0
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 2.9e-97 359.4 287 62.4
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 6.5e-97 358.2 288 63.9
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 6.5e-97 358.2 289 62.3
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 1.9e-96 356.7 282 61.3
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 2.5e-96 356.3 288 63.5
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.2e-95 354.0 295 62.7
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 2.1e-95 353.2 294 60.9
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 3.5e-95 352.4 285 64.9
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 3.5e-95 352.4 274 64.6
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 1.0e-94 350.9 256 68.0
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 1.3e-94 350.5 262 66.4
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 5.1e-94 348.6 276 63.8
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 1.1e-93 347.4 269 63.9
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 1.5e-93 347.1 276 64.1
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 2.5e-93 346.3 288 63.5
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 3.3e-93 345.9 281 62.3
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 4.3e-93 345.5 269 63.6
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 5.7e-93 345.1 267 62.9
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 9.6e-93 344.4 292 60.3
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 2.1e-92 343.2 280 62.9
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 2.8e-92 342.8 277 61.4
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 2.8e-92 342.8 257 70.4
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 1.4e-91 340.5 263 61.6
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.4e-91 340.5 276 63.4
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 1.8e-91 340.1 279 61.3
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.8e-91 340.1 279 61.3
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 3.1e-91 339.3 272 62.5
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.1e-91 339.3 279 60.9
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 4.1e-91 339.0 263 63.9
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 4.1e-91 339.0 296 58.4
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 4.1e-91 339.0 276 63.0
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 4.1e-91 339.0 266 62.8
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 5.3e-91 338.6 265 64.9
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 6.9e-91 338.2 266 62.4
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 9.0e-91 337.8 283 61.8
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 9.0e-91 337.8 282 62.8
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 4.5e-90 335.5 294 57.8
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 5.8e-90 335.1 230 69.6
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 1.0e-89 334.3 283 58.7
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 1.3e-89 334.0 262 61.8
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.9e-89 332.8 283 61.1
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 5.0e-89 332.0 291 58.8
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 2.5e-88 329.7 287 59.2
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 7.2e-88 328.2 301 57.5
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 2.1e-87 326.6 252 61.1
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 3.5e-87 325.9 269 62.1
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 7.9e-87 324.7 242 64.9
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 1.8e-86 323.6 285 58.2
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 3.0e-86 322.8 279 59.9
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 6.7e-86 321.6 328 51.8
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 1.9e-85 320.1 246 61.4
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 5.7e-85 318.5 261 60.5
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 4.8e-84 315.5 259 61.4
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 4.8e-84 315.5 279 58.1
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 6.3e-84 315.1 282 55.7
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 6.3e-84 315.1 285 56.1
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 8.2e-84 314.7 268 59.0
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 1.4e-83 313.9 282 55.7
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 1.8e-83 313.5 249 64.3
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 6.9e-83 311.6 239 63.2
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 1.5e-82 310.5 272 58.1
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 2.0e-82 310.1 262 60.3
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 2.0e-82 310.1 282 55.7
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 2.6e-82 309.7 272 57.7
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 3.4e-82 309.3 249 61.4
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 5.0e-81 305.4 282 56.4
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 1.4e-80 303.9 267 57.3
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 1.4e-80 303.9 267 57.3
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 1.9e-80 303.5 266 57.1
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 2.5e-80 303.1 274 57.7
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 7.2e-80 301.6 264 57.6
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 2.7e-79 299.7 283 55.1
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 1.0e-78 297.7 264 58.3
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 1.5e-77 293.9 264 58.7
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 2.5e-77 293.1 277 54.9
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 3.3e-77 292.7 277 54.9
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 5.7e-77 292.0 277 55.2
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 1.7e-76 290.4 258 57.0
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 1.7e-76 290.4 258 57.0
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 1.7e-76 290.4 258 57.0
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 1.1e-75 287.7 249 55.8
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 7.7e-74 281.6 236 61.4
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 2.2e-73 280.0 263 55.9
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 8.5e-73 278.1 231 58.0
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 2.7e-71 273.1 286 52.8
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 4.7e-71 272.3 240 55.4
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 5.1e-70 268.9 223 60.5
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 1.5e-69 267.3 223 61.0
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 4.4e-69 265.8 237 54.0
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 3.7e-68 262.7 228 60.5
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 4.1e-67 259.2 394 38.8
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 8.0e-63 245.0 282 48.9
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 3.1e-59 233.0 275 48.0
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 1.2e-53 214.5 199 52.3
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 2.7e-47 193.4 251 41.8
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 2.7e-47 193.4 246 43.9
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.2e-42 177.9 100 83.0
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.2e-42 177.9 100 83.0
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 1.9e-40 170.6 138 61.6
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 2.5e-40 170.2 133 68.4
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 9.5e-40 168.3 236 40.3
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 1.7e-36 157.5 96 85.4
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 6.4e-36 155.6 145 59.3
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 8.3e-36 155.2 237 37.1
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 7.3e-32 142.1 236 33.5
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.6e-31 141.0 169 47.9
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 8.0e-31 138.7 168 47.0
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 1.0e-25 121.7 254 31.1
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 6.8e-22 109.0 249 30.1
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 7.5e-21 105.5 130 46.9
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 1.9e-19 100.9 228 30.3
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 4.1e-19 99.8 310 26.1
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 3.9e-17 93.2 283 29.0
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 6.6e-17 92.4 103 47.6
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 5.6e-16 89.4 74 56.8
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 4.4e-13 79.7 79 50.6
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 1.7e-12 77.8 51 72.5
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 8.4e-12 75.5 91 45.1
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 4.6e-10 69.7 44 72.7
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.7e-09 67.8 57 57.9


User provided reference genes

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