Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07903 Vaccinium macrocarpon HOM05D000278 ORTHO05D426903 1.5e-217 759.2 385 100.0
Rhsim03G0008300 Rhododendron simsii HOM05D000278 ORTHO05D004031 2.0e-23 114.4 454 26.7
vmacro12568 Vaccinium macrocarpon HOM05D000278 ORTHO05D004031 7.2e-18 95.9 219 36.5
Carub.0003s0321 Capsella rubella HOM05D000278 ORTHO05D004031 6.1e-17 92.8 83 62.7
Rhsim03G0001500 Rhododendron simsii HOM05D000278 ORTHO05D004031 1.0e-16 92.0 83 63.9
AL6G29410 Arabidopsis lyrata HOM05D000278 ORTHO05D004031 1.4e-16 91.7 67 71.6
Sed0013215 Sechium edule HOM05D000278 ORTHO05D004031 1.4e-16 91.7 181 35.9
Thhalv10020448m.g Eutrema salsugineum HOM05D000278 ORTHO05D004031 1.8e-16 91.3 83 62.7
Gohir.A11G258900 Gossypium hirsutum HOM05D000278 ORTHO05D004031 1.8e-16 91.3 82 59.8
Gohir.D11G269000 Gossypium hirsutum HOM05D000278 ORTHO05D004031 1.8e-16 91.3 82 59.8
BcaC05g29888 Brassica carinata HOM05D000278 ORTHO05D004031 2.3e-16 90.9 83 62.7
BcaC05g30297 Brassica carinata HOM05D000278 ORTHO05D004031 2.3e-16 90.9 83 62.7
BcaNung04528 Brassica carinata HOM05D000278 ORTHO05D004031 2.3e-16 90.9 83 62.7
A01p41240 Brassica napus HOM05D000278 ORTHO05D004031 2.3e-16 90.9 83 62.7
BNapus_Darmor_BZH_scaffold_78p00470 Brassica napus HOM05D000278 ORTHO05D004031 2.3e-16 90.9 83 62.7
C03p40680 Brassica napus HOM05D000278 ORTHO05D004031 2.3e-16 90.9 83 62.7
C05p63100 Brassica napus HOM05D000278 ORTHO05D004031 2.3e-16 90.9 83 62.7
BolC1t05795H Brassica oleracea HOM05D000278 ORTHO05D004031 2.3e-16 90.9 83 62.7
BolC3t16333H Brassica oleracea HOM05D000278 ORTHO05D004031 2.3e-16 90.9 83 62.7
BolC5t34962H Brassica oleracea HOM05D000278 ORTHO05D004031 2.3e-16 90.9 83 62.7
BraA03t12523Z Brassica rapa HOM05D000278 ORTHO05D004031 2.3e-16 90.9 83 62.7
BraA05t23080Z Brassica rapa HOM05D000278 ORTHO05D004031 2.3e-16 90.9 83 62.7
Ca_04492_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004031 2.3e-16 90.9 98 55.1
Medtr6g032870 Medicago truncatula HOM05D000278 ORTHO05D004031 2.3e-16 90.9 98 56.1
Rhsim01G0190500 Rhododendron simsii HOM05D000278 ORTHO05D004031 2.3e-16 90.9 83 62.7
Sp3g02930 Schrenkiella parvula HOM05D000278 ORTHO05D004031 2.3e-16 90.9 83 62.7
AL3G13870 Arabidopsis lyrata HOM05D000278 ORTHO05D004031 3.0e-16 90.5 83 61.4
AT3G03960 Arabidopsis thaliana HOM05D000278 ORTHO05D004031 3.0e-16 90.5 83 61.4
Lj1g0028009 Lotus japonicus HOM05D000278 ORTHO05D004031 3.0e-16 90.5 67 70.1
TPR.G36870 Trifolium pratense HOM05D000278 ORTHO05D004031 3.0e-16 90.5 98 56.1
Ca_25711_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004031 4.0e-16 90.1 82 61.0
Gorai.007G288800 Gossypium raimondii HOM05D000278 ORTHO05D004031 4.0e-16 90.1 82 58.5
Psat0s3407g0040 Pisum sativum HOM05D000278 ORTHO05D004031 4.0e-16 90.1 98 55.1
Aa31LG5G14540 Aethionema arabicum HOM05D000278 ORTHO05D004031 5.2e-16 89.7 83 62.7
BolC1t05791H Brassica oleracea HOM05D000278 ORTHO05D004031 5.2e-16 89.7 83 61.4
BraA01t04547Z Brassica rapa HOM05D000278 ORTHO05D004031 5.2e-16 89.7 83 61.4
AUR62032060 Chenopodium quinoa HOM05D000278 ORTHO05D004031 5.2e-16 89.7 67 70.1
Glyma.16G153200 Glycine max HOM05D000278 ORTHO05D004031 5.2e-16 89.7 98 55.1
THA.LOC104802866 Tarenaya hassleriana HOM05D000278 ORTHO05D004031 5.2e-16 89.7 83 62.7
Duzib177G1081 Durio zibethinus HOM05D000278 ORTHO05D004031 6.7e-16 89.4 67 68.7
Glyma.02G071900 Glycine max HOM05D000278 ORTHO05D004031 6.7e-16 89.4 82 59.8
Nitab4.5_0002187g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004031 6.7e-16 89.4 67 68.7
Thecc.05G294000 Theobroma cacao HOM05D000278 ORTHO05D004031 6.7e-16 89.4 67 68.7
HPP92_017517 Vanilla planifolia HOM05D000278 ORTHO05D004031 6.7e-16 89.4 83 60.2
A05p43400 Brassica napus HOM05D000278 ORTHO05D004031 8.8e-16 89.0 83 61.4
CARHR078090 Cardamine hirsuta HOM05D000278 ORTHO05D004031 8.8e-16 89.0 83 61.4
Duzib106G1656 Durio zibethinus HOM05D000278 ORTHO05D004031 8.8e-16 89.0 67 67.2
Gohir.A11G296700 Gossypium hirsutum HOM05D000278 ORTHO05D004031 8.8e-16 89.0 82 57.3
Gohir.D11G310200 Gossypium hirsutum HOM05D000278 ORTHO05D004031 8.8e-16 89.0 82 57.3
Gorai.007G343600 Gossypium raimondii HOM05D000278 ORTHO05D004031 8.8e-16 89.0 82 57.3
THA.LOC104820734 Tarenaya hassleriana HOM05D000278 ORTHO05D004031 8.8e-16 89.0 67 68.7
VMungo0464G1078 Vigna mungo HOM05D000278 ORTHO05D004031 8.8e-16 89.0 100 56.0
GSVIVG01033394001 Vitis vinifera HOM05D000278 ORTHO05D004031 8.8e-16 89.0 67 67.2
A03p33480 Brassica napus HOM05D000278 ORTHO05D004031 1.2e-15 88.6 83 61.4
Medtr1g030650 Medicago truncatula HOM05D000278 ORTHO05D004031 1.2e-15 88.6 98 55.1
Peaxi162Scf00071g00913 Petunia axillaris HOM05D000278 ORTHO05D004031 1.2e-15 88.6 67 68.7
AUR62032687 Chenopodium quinoa HOM05D000278 ORTHO05D004031 1.5e-15 88.2 67 68.7
Nitab4.5_0006695g0030 Nicotiana tabacum HOM05D000278 ORTHO05D004031 1.5e-15 88.2 67 67.2
Psat0s2522g0160 Pisum sativum HOM05D000278 ORTHO05D004031 1.5e-15 88.2 67 68.7
Sabra13G0052100 Salix brachista HOM05D000278 ORTHO05D004031 1.5e-15 88.2 85 60.0
TPR.G34618 Trifolium pratense HOM05D000278 ORTHO05D004031 1.5e-15 88.2 82 59.8
CiPaw.06G089700 Carya illinoinensis HOM05D000278 ORTHO05D004031 2.0e-15 87.8 82 58.5
CiPaw.09G001600 Carya illinoinensis HOM05D000278 ORTHO05D004031 2.0e-15 87.8 82 58.5
Dinv37012 Davidia involucrata HOM05D000278 ORTHO05D004031 2.0e-15 87.8 85 58.8
Hma1.2p1_1145F.1_g261380 Hydrangea macrophylla HOM05D000278 ORTHO05D004031 2.0e-15 87.8 82 58.5
Phvul.004G079800 Phaseolus vulgaris HOM05D000278 ORTHO05D004031 2.0e-15 87.8 115 50.4
TWI32G0619 Tripterygium wilfordii HOM05D000278 ORTHO05D004031 2.0e-15 87.8 83 61.4
Atru.chr2.1362 Acer truncatum HOM05D000278 ORTHO05D004031 2.6e-15 87.4 82 58.5
Ah.13g075330 Amaranthus hybridus HOM05D000278 ORTHO05D004031 2.6e-15 87.4 67 67.2
Cfa016437 Carpinus fangiana HOM05D000278 ORTHO05D004031 2.6e-15 87.4 98 53.1
Cc06_g22900 Coffea canephora HOM05D000278 ORTHO05D004031 2.6e-15 87.4 83 60.2
Haze_19414 Corylus avellana HOM05D000278 ORTHO05D004031 2.6e-15 87.4 98 53.1
Lj8A582T9 Lonicera japonica HOM05D000278 ORTHO05D004031 2.6e-15 87.4 67 67.2
Manes.09G141800 Manihot esculenta HOM05D000278 ORTHO05D004031 2.6e-15 87.4 83 60.2
Potri.013G058500 Populus trichocarpa HOM05D000278 ORTHO05D004031 2.6e-15 87.4 83 60.2
Zm00001eb200400 Zea mays HOM05D000278 ORTHO05D004031 2.6e-15 87.4 85 60.0
BcaC09g47768 Brassica carinata HOM05D000278 ORTHO05D004031 3.3e-15 87.0 83 61.4
CSS0000727 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 3.3e-15 87.0 67 67.2
CSS0033021 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 3.3e-15 87.0 67 67.2
CSS0036387 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 3.3e-15 87.0 67 67.2
COL.COLO4_13606 Corchorus olitorius HOM05D000278 ORTHO05D004031 3.3e-15 87.0 82 56.1
ECA232G4643 Erigeron canadensis HOM05D000278 ORTHO05D004031 3.3e-15 87.0 67 67.2
QL07p019694 Quercus lobata HOM05D000278 ORTHO05D004031 3.3e-15 87.0 98 52.0
QL07p030735 Quercus lobata HOM05D000278 ORTHO05D004031 3.3e-15 87.0 204 32.8
Sabra19G0042100 Salix brachista HOM05D000278 ORTHO05D004031 3.3e-15 87.0 67 67.2
SalBow1G8202 Salvia bowleyana HOM05D000278 ORTHO05D004031 3.3e-15 87.0 67 67.2
SalBow8G1634 Salvia bowleyana HOM05D000278 ORTHO05D004031 3.3e-15 87.0 67 67.2
SGA_v2.0_scaffold274G46518 Striga asiatica HOM05D000278 ORTHO05D004031 3.3e-15 87.0 107 50.5
TAR369G0685 Trochodendron aralioides HOM05D000278 ORTHO05D004031 3.3e-15 87.0 67 67.2
Aqoxy2G00582 Aquilegia oxysepala HOM05D000278 ORTHO05D004031 4.4e-15 86.7 94 56.4
Ciclev10019583m.g Citrus clementina HOM05D000278 ORTHO05D004031 4.4e-15 86.7 98 54.1
FvH4_6g27660 Fragaria vesca HOM05D000278 ORTHO05D004031 4.4e-15 86.7 98 53.1
FAN02G2614 Fragaria x ananassa HOM05D000278 ORTHO05D004031 4.4e-15 86.7 98 53.1
FAN05G2827 Fragaria x ananassa HOM05D000278 ORTHO05D004031 4.4e-15 86.7 98 53.1
FAN09G2390 Fragaria x ananassa HOM05D000278 ORTHO05D004031 4.4e-15 86.7 98 53.1
FAN14G1825 Fragaria x ananassa HOM05D000278 ORTHO05D004031 4.4e-15 86.7 98 53.1
HanXRQChr08g0227471 Helianthus annuus HOM05D000278 ORTHO05D004031 4.4e-15 86.7 67 67.2
Lalb_Chr21g0316131 Lupinus albus HOM05D000278 ORTHO05D004031 4.4e-15 86.7 82 58.5
Lalb_Chr21g0316151 Lupinus albus HOM05D000278 ORTHO05D004031 4.4e-15 86.7 82 58.5
Sed0026355 Sechium edule HOM05D000278 ORTHO05D004031 4.4e-15 86.7 98 52.0
Actinidia22085 Actinidia chinensis HOM05D000278 ORTHO05D004031 5.7e-15 86.3 83 59.0
CANSAT25G3570 Cannabis sativa HOM05D000278 ORTHO05D004031 5.7e-15 86.3 82 57.3
CDE05G1661 Ceratophyllum demersum HOM05D000278 ORTHO05D004031 5.7e-15 86.3 184 34.2
DCAR_019879 Daucus carota HOM05D000278 ORTHO05D004031 5.7e-15 86.3 82 58.5
Gohir.D11G312410 Gossypium hirsutum HOM05D000278 ORTHO05D004031 5.7e-15 86.3 82 56.1
Potri.019G034200 Populus trichocarpa HOM05D000278 ORTHO05D004031 5.7e-15 86.3 67 67.2
Prupe.3G113600 Prunus persica HOM05D000278 ORTHO05D004031 5.7e-15 86.3 82 57.3
Prupe.3G114000 Prunus persica HOM05D000278 ORTHO05D004031 5.7e-15 86.3 82 57.3
Migut.C00324 Erythranthe guttata HOM05D000278 ORTHO05D004031 7.5e-15 85.9 67 65.7
Lsat_1_v5_gn_4_42920 Lactuca sativa HOM05D000278 ORTHO05D004031 7.5e-15 85.9 67 65.7
PSO339G2052 Papaver somniferum HOM05D000278 ORTHO05D004031 7.5e-15 85.9 67 65.7
QL07p030356 Quercus lobata HOM05D000278 ORTHO05D004031 7.5e-15 85.9 82 56.1
Sc13g0002700 Simmondsia chinensis HOM05D000278 ORTHO05D004031 7.5e-15 85.9 67 65.7
Solyc01g088080.3 Solanum lycopersicum HOM05D000278 ORTHO05D004031 7.5e-15 85.9 67 65.7
Sopen01g034950 Solanum pennellii HOM05D000278 ORTHO05D004031 7.5e-15 85.9 67 65.7
PGSC0003DMG400006829 Solanum tuberosum HOM05D000278 ORTHO05D004031 7.5e-15 85.9 67 65.7
EL10Ac3g06816 Beta vulgaris HOM05D000278 ORTHO05D004031 9.7e-15 85.5 67 64.2
EL10Ac5g12659 Beta vulgaris HOM05D000278 ORTHO05D004031 9.7e-15 85.5 67 64.2
ClCG10G013350 Citrullus lanatus HOM05D000278 ORTHO05D004031 9.7e-15 85.5 98 52.0
MELO3C026888.2 Cucumis melo HOM05D000278 ORTHO05D004031 9.7e-15 85.5 98 52.0
CsaV3_3G043280 Cucumis sativus L. HOM05D000278 ORTHO05D004031 9.7e-15 85.5 98 52.0
Dinv14581 Davidia involucrata HOM05D000278 ORTHO05D004031 9.7e-15 85.5 225 32.4
Manes.08G143700 Manihot esculenta HOM05D000278 ORTHO05D004031 9.7e-15 85.5 83 59.0
Os03g0804800 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004031 9.7e-15 85.5 83 59.0
RcHm_v2.0_Chr2g0130701 Rosa chinensis HOM05D000278 ORTHO05D004031 9.7e-15 85.5 98 52.0
TAR623G0935 Trochodendron aralioides HOM05D000278 ORTHO05D004031 9.7e-15 85.5 67 65.7
ATR0697G160 Amborella trichopoda HOM05D000278 ORTHO05D004031 1.3e-14 85.1 67 65.7
MSTRG.26066 Avicennia marina HOM05D000278 ORTHO05D004031 1.3e-14 85.1 83 57.8
MD09G1235600 Malus domestica HOM05D000278 ORTHO05D004031 1.3e-14 85.1 98 51.0
MD17G1264300 Malus domestica HOM05D000278 ORTHO05D004031 1.3e-14 85.1 98 51.0
MD17G1264600 Malus domestica HOM05D000278 ORTHO05D004031 1.3e-14 85.1 98 51.0
Hund19239 Selenicereus undatus HOM05D000278 ORTHO05D004031 1.3e-14 85.1 67 65.7
TWI34G1951 Tripterygium wilfordii HOM05D000278 ORTHO05D004031 1.3e-14 85.1 67 65.7
Nn7g35821 Nelumbo nucifera HOM05D000278 ORTHO05D004031 1.7e-14 84.7 83 57.8
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 1.7e-14 84.7 69 66.7
unitig_899.g15071 Utricularia gibba HOM05D000861 ORTHO05D004031 1.7e-14 84.7 82 56.1
Eucgr.A02095 Eucalyptus grandis HOM05D000278 ORTHO05D004031 2.2e-14 84.3 67 64.2
Lj1A1137T80 Lonicera japonica HOM05D000278 ORTHO05D004031 2.2e-14 84.3 83 57.8
PGR142G1170 Punica granatum HOM05D000278 ORTHO05D004031 2.2e-14 84.3 98 52.0
Migut.J01891 Erythranthe guttata HOM05D000278 ORTHO05D004031 2.8e-14 84.0 94 53.2
CAN.G410.8 Capsicum annuum HOM05D000278 ORTHO05D004031 3.7e-14 83.6 67 64.2
Oeu012404.4 Olea europaea HOM05D000278 ORTHO05D004031 3.7e-14 83.6 70 64.3
PSO384G2052 Papaver somniferum HOM05D000278 ORTHO05D004031 6.3e-14 82.8 67 64.2
CDE01G0608 Ceratophyllum demersum HOM05D000278 ORTHO05D004031 1.8e-13 81.3 67 62.7
AagrBONN_evm.TU.Sc2ySwM_117.3360 Anthoceros agrestis HOM05D000278 ORTHO05D004031 2.4e-13 80.9 67 59.7
MSTRG.10861 Avicennia marina HOM05D000278 ORTHO05D004031 4.1e-13 80.1 83 55.4
SMO353G0351 Selaginella moellendorffii HOM05D000278 ORTHO05D004031 7.0e-13 79.3 67 61.2
Pp3c15_13410 Physcomitrium patens HOM05D000278 ORTHO05D004031 1.6e-12 78.2 67 59.7
Pp3c15_13420 Physcomitrium patens HOM05D000278 ORTHO05D004031 1.6e-12 78.2 67 59.7
CSS0002970 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 3.5e-12 77.0 82 54.9
Psat4g190920 Pisum sativum HOM05D000487 ORTHO05D001267 1.3e-11 75.1 65 64.6
Cc02_g37620 Coffea canephora HOM05D000278 ORTHO05D004031 1.7e-11 74.7 74 58.1
CBR_g26488 Chara braunii HOM05D000278 ORTHO05D004031 5.0e-11 73.2 82 48.8
Mapoly0052s0054 Marchantia polymorpha HOM05D000278 ORTHO05D004031 6.5e-11 72.8 82 48.8
Cre03.g168450 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004031 4.2e-10 70.1 67 50.7
BcaC07g40580 Brassica carinata HOM05D000278 ORTHO05D004031 7.2e-10 69.3 45 77.8
vmacro22816 Vaccinium macrocarpon HOM05D002341 ORTHO05D012275 2.3e-08 64.3 145 31.7
Gohir.D06G030200 Gossypium hirsutum HOM05D000650 ORTHO05D010020 4.0e-08 63.5 145 33.1
Gorai.010G033200 Gossypium raimondii HOM05D000650 ORTHO05D010020 4.0e-08 63.5 146 32.2
AL3G15140 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 6.8e-08 62.8 54 53.7
Aqoxy6G00817_Aqoxy6G00818 Aquilegia oxysepala HOM05D000650 ORTHO05D010020 1.5e-07 61.6 150 33.3
PRCOL_00000219 Prasinoderma coloniale HOM05D000278 ORTHO05D004031 1.5e-07 61.6 82 41.5
Actinidia30554 Actinidia chinensis HOM05D000278 ORTHO05D004031 4.4e-07 60.1 34 85.3
Cc00_g22850 Coffea canephora HOM05D000278 ORTHO05D004031 4.4e-07 60.1 69 50.7
Peaxi162Scf01108g00120 Petunia axillaris HOM05D000278 ORTHO05D004031 4.4e-07 60.1 34 85.3
Haze_01803 Corylus avellana HOM05D000650 ORTHO05D010020 5.7e-07 59.7 145 33.8
Gohir.A06G031000 Gossypium hirsutum HOM05D000650 ORTHO05D010020 5.7e-07 59.7 145 31.7
Sabra06G0000400 Salix brachista HOM05D000003 ORTHO05D000004 5.7e-07 59.7 145 31.0
Cpa.g.sc51.110 Carica papaya HOM05D000278 ORTHO05D004031 9.8e-07 58.9 34 82.4
BcaC05g30238 Brassica carinata HOM05D000278 ORTHO05D004031 1.3e-06 58.5 68 51.5
Lsat_1_v5_gn_5_93080 Lactuca sativa HOM05D000278 ORTHO05D004031 1.3e-06 58.5 34 82.4
MCO11G566 Micromonas commoda HOM05D000278 ORTHO05D004031 1.3e-06 58.5 76 43.4
SHI38494 Sapria himalayana HOM05D000024 ORTHO05D000007 1.3e-06 58.5 145 31.0
CSS0038870 Camellia sinensis var. sinensis HOM05D000650 ORTHO05D010020 2.2e-06 57.8 146 30.1
Lsat_1_v5_gn_3_59580 Lactuca sativa HOM05D000278 ORTHO05D004031 2.2e-06 57.8 119 39.5
SalBow1G0837 Salvia bowleyana HOM05D000278 ORTHO05D004031 2.2e-06 57.8 68 52.9
Haze_01807 Corylus avellana HOM05D000650 ORTHO05D010020 3.7e-06 57.0 145 31.7
Nitab4.5_0000692g0240 Nicotiana tabacum HOM05D000155 ORTHO05D000022 3.7e-06 57.0 152 29.6
SHI49928 Sapria himalayana HOM05D000024 ORTHO05D000007 3.7e-06 57.0 150 33.3
Lj4A86T98 Lonicera japonica HOM05D000650 ORTHO05D010020 4.8e-06 56.6 146 30.8
Peaxi162Scf01249g00027 Petunia axillaris HOM05D000155 ORTHO05D000022 4.8e-06 56.6 145 31.0
Sopen03g012440 Solanum pennellii HOM05D000004 ORTHO05D000022 4.8e-06 56.6 151 31.8
Cpa.g.sc19.281 Carica papaya HOM05D000003 ORTHO05D000022 6.3e-06 56.2 110 33.6
Cc02_g37670 Coffea canephora HOM05D000278 ORTHO05D004031 8.3e-06 55.8 34 79.4


User provided reference genes

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