Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 0.0e+00 1382.5 745 100.0
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 6.0e-77 293.1 417 41.7
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 7.8e-77 292.7 415 41.2
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 3.9e-76 290.4 417 45.3
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 3.9e-76 290.4 416 44.0
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 1.5e-72 278.5 415 39.0
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 1.7e-68 265.0 416 42.1
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 9.5e-67 259.2 416 41.8
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 1.6e-66 258.5 415 48.4
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.8e-66 257.7 246 57.3
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.8e-66 257.7 246 57.3
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 3.6e-66 257.3 417 38.6
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 1.2e-64 252.3 416 41.3
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.0e-64 251.5 246 56.1
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 2.6e-64 251.1 570 39.8
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 1.3e-63 248.8 386 37.6
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 1.3e-63 248.8 542 41.1
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 1.3e-63 248.8 606 40.4
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 2.2e-63 248.1 425 47.5
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 4.9e-63 246.9 524 44.7
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 6.4e-63 246.5 416 48.3
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 6.4e-63 246.5 443 45.8
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 4.6e-61 240.4 415 46.7
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 6.6e-60 236.5 417 47.5
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 2.1e-58 231.5 590 40.7
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 2.8e-58 231.1 428 46.3
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 2.8e-58 231.1 279 47.0
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 1.2e-56 225.7 388 47.2
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 3.4e-56 224.2 423 46.1
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 7.6e-56 223.0 571 39.6
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 9.9e-56 222.6 386 38.1
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 1.1e-54 219.2 357 37.5
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.1e-54 219.2 357 37.5
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 2.1e-53 214.9 353 37.4
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 6.0e-53 213.4 284 44.7
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 1.1e-51 209.1 247 49.0
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 1.1e-51 209.1 247 49.0
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 1.9e-51 208.4 415 44.1
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 1.9e-51 208.4 532 41.0
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 3.3e-51 207.6 428 43.5
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 5.6e-51 206.8 390 44.1
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 1.2e-50 205.7 423 44.0
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 2.1e-50 204.9 613 33.8
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 6.2e-50 203.4 421 43.5
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 3.1e-49 201.1 413 39.5
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 5.3e-49 200.3 358 35.5
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 9.0e-49 199.5 247 47.4
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 2.2e-47 194.9 606 32.8
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 4.9e-47 193.7 346 56.6
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 2.4e-46 191.4 417 31.4
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 4.2e-46 190.7 414 40.3
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 1.2e-45 189.1 415 41.4
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 6.0e-45 186.8 247 44.1
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 1.0e-44 186.0 615 38.4
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 3.9e-44 184.1 391 33.0
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 5.1e-44 183.7 415 41.2
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 4.3e-43 180.6 415 40.0
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 2.1e-42 178.3 249 43.0
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 2.1e-42 178.3 249 56.2
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 8.1e-42 176.4 408 40.7
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 1.1e-41 176.0 294 37.1
BraA05t22010Z Brassica rapa HOM05D006707 ORTHO05D008243 1.1e-41 176.0 241 41.1
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 3.1e-41 174.5 294 38.1
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 3.1e-41 174.5 247 43.3
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 4.0e-41 174.1 294 37.8
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 4.0e-41 174.1 294 37.8
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 4.0e-41 174.1 294 37.8
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 6.9e-41 173.3 542 33.2
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 9.0e-41 172.9 249 42.2
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 2.0e-40 171.8 404 32.4
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 2.6e-40 171.4 294 36.7
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 4.5e-40 170.6 249 42.2
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 9.9e-40 169.5 294 37.4
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 3.8e-39 167.5 247 40.9
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 6.4e-39 166.8 294 36.1
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 2.4e-38 164.9 250 40.8
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 3.2e-38 164.5 254 40.6
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 5.4e-38 163.7 270 40.0
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 7.1e-38 163.3 254 40.2
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 1.2e-37 162.5 262 38.5
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 2.1e-37 161.8 415 38.3
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 3.5e-37 161.0 294 36.7
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 2.3e-36 158.3 246 39.4
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 2.3e-36 158.3 249 39.8
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 1.1e-35 156.0 481 28.7
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 1.4e-33 149.1 451 28.2
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 5.3e-33 147.1 218 42.2
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 2.0e-32 145.2 131 54.2
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 2.0e-32 145.2 247 40.1
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 5.5e-30 137.1 427 35.6
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 7.1e-30 136.7 249 34.9
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 3.9e-28 131.0 275 29.5
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 1.5e-27 129.0 134 53.7
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 1.5e-27 129.0 105 57.1
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 1.9e-27 128.6 510 36.3
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 2.5e-27 128.3 188 41.5
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 4.3e-27 127.5 231 35.1
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 9.6e-27 126.3 399 30.6
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 1.3e-26 125.9 105 54.3
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 2.1e-26 125.2 219 34.2
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 3.1e-25 121.3 101 57.4
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 5.8e-24 117.1 225 32.9
Lj5P156T63 Lonicera japonica HOM05D006707 ORTHO05D008243 2.2e-23 115.2 75 73.3
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 6.5e-23 113.6 300 28.7
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 9.3e-22 109.8 197 35.5
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 1.2e-21 109.4 331 25.7
A05p29490 Brassica napus HOM05D006707 ORTHO05D008243 6.1e-21 107.1 129 45.0
RhsimUnG0220500 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.9e-19 102.1 55 92.7
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 3.7e-18 97.8 104 44.2
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 8.2e-18 96.7 104 43.3
MELO3C017354.2 Cucumis melo HOM05D006707 ORTHO05D008243 1.8e-17 95.5 149 52.3
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 1.3e-15 89.4 75 62.7
arahy.Tifrunner.gnm1.ann1.1MD03I Arachis hypogaea HOM05D006707 ORTHO05D008243 2.8e-10 71.6 46 67.4
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 2.8e-10 71.6 103 43.7
CSS0042665 Camellia sinensis var. sinensis HOM05D008360 ORTHO05D010532 1.8e-09 68.9 36 80.6
Hma1.2p1_1048F.1_g251690 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 1.8e-09 68.9 37 81.1
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 3.1e-09 68.2 126 32.5
Manes.09G007500 Manihot esculenta HOM05D008360 ORTHO05D010532 4.1e-09 67.8 37 73.0
Duzib093G1186 Durio zibethinus HOM05D008360 ORTHO05D010532 5.3e-09 67.4 37 70.3
Duzib106G1984 Durio zibethinus HOM05D008360 ORTHO05D010532 5.3e-09 67.4 37 70.3
CAN.G1237.40 Capsicum annuum HOM05D008360 ORTHO05D010532 6.9e-09 67.0 37 70.3
Dinv34381 Davidia involucrata HOM05D008360 ORTHO05D010532 6.9e-09 67.0 37 75.7
ECA248G1201 Erigeron canadensis HOM05D001008 ORTHO05D009098 1.2e-08 66.2 36 72.2
Prupe.7G043000 Prunus persica HOM05D008360 ORTHO05D010532 1.5e-08 65.9 37 67.6
RcHm_v2.0_Chr3g0476891 Rosa chinensis HOM05D008360 ORTHO05D010532 2.0e-08 65.5 37 70.3
Solyc04g040000.2 Solanum lycopersicum HOM05D008360 ORTHO05D010532 2.6e-08 65.1 36 66.7
CiPaw.09G045700 Carya illinoinensis HOM05D008360 ORTHO05D010532 3.4e-08 64.7 37 70.3
Nitab4.5_0002162g0190 Nicotiana tabacum HOM05D008360 ORTHO05D010532 3.4e-08 64.7 35 68.6
Hund24629 Selenicereus undatus HOM05D008360 ORTHO05D010532 3.4e-08 64.7 37 70.3
Thecc.05G140600 Theobroma cacao HOM05D008360 ORTHO05D010532 3.4e-08 64.7 37 67.6
AUR62031993 Chenopodium quinoa HOM05D000009 ORTHO05D000008 4.5e-08 64.3 49 53.1
Manes.06G007451 Manihot esculenta HOM05D006707 ORTHO05D008243 4.5e-08 64.3 170 40.6
unitig_8.g3490 Utricularia gibba HOM05D008360 ORTHO05D010532 5.9e-08 63.9 37 75.7
Actinidia17687 Actinidia chinensis HOM05D008360 ORTHO05D010532 7.7e-08 63.5 37 73.0
RcHm_v2.0_Chr3g0476991 Rosa chinensis HOM05D008360 ORTHO05D010532 1.0e-07 63.2 37 67.6
COL.COLO4_37957 Corchorus olitorius HOM05D008360 ORTHO05D010532 1.3e-07 62.8 37 67.6
Ca_08161_v3 Cicer arietinum L. HOM05D002007 ORTHO05D000355 1.7e-07 62.4 207 22.7
Ca_17107_v3 Cicer arietinum L. HOM05D002007 ORTHO05D000355 1.7e-07 62.4 207 22.7
Migut.J01675 Erythranthe guttata HOM05D008360 ORTHO05D010532 2.9e-07 61.6 37 73.0
Cc06_g18840 Coffea canephora HOM05D008360 ORTHO05D010532 6.5e-07 60.5 37 67.6
Potri.016G038300 Populus trichocarpa HOM05D008360 ORTHO05D010532 6.5e-07 60.5 37 64.9
Manes.08G057500 Manihot esculenta HOM05D008360 ORTHO05D010532 8.5e-07 60.1 37 64.9
FAN09G2365 Fragaria x ananassa HOM05D008360 ORTHO05D010532 1.1e-06 59.7 37 56.8
FAN14G5043 Fragaria x ananassa HOM05D008360 ORTHO05D010532 1.1e-06 59.7 37 56.8
TWI38G2031 Tripterygium wilfordii HOM05D007128 ORTHO05D009059 1.9e-06 58.9 200 28.0
Phvul.001G125600 Phaseolus vulgaris HOM05D008360 ORTHO05D010532 5.5e-06 57.4 37 67.6
Migut.K00128 Erythranthe guttata HOM05D008360 ORTHO05D010532 7.2e-06 57.0 37 62.2


User provided reference genes

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