Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 0.0e+00 1126.3 578 100.0
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 3.6e-138 496.1 453 61.6
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.5e-131 474.2 500 56.2
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 1.1e-94 351.7 426 49.5
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 3.3e-91 340.1 459 45.8
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.8e-89 334.3 445 45.8
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.4e-88 330.1 407 46.4
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.8e-84 317.8 442 42.8
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 2.3e-84 317.4 448 44.6
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 2.4e-81 307.4 467 42.4
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 4.0e-81 306.6 393 45.0
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.2e-80 305.1 433 41.8
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 4.5e-80 303.1 398 46.2
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 9.9e-80 302.0 416 43.0
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 9.9e-80 302.0 443 42.7
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 2.9e-79 300.4 413 43.1
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 6.4e-79 299.3 450 39.8
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 6.4e-79 299.3 365 47.1
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 1.9e-78 297.7 418 41.9
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 9.3e-78 295.4 406 42.9
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 2.7e-77 293.9 454 41.0
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 4.6e-77 293.1 414 41.3
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 4.6e-77 293.1 400 43.0
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 7.9e-77 292.4 404 41.8
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 2.3e-76 290.8 433 41.3
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 3.9e-76 290.0 399 42.9
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 2.5e-75 287.3 384 43.0
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 7.4e-75 285.8 446 39.2
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 3.7e-74 283.5 411 41.1
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 4.8e-74 283.1 423 40.7
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 4.8e-74 283.1 440 40.9
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 6.2e-74 282.7 384 42.4
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 1.4e-73 281.6 396 42.2
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.4e-73 281.6 396 41.4
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 1.8e-73 281.2 408 41.4
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.8e-73 281.2 410 39.5
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 2.4e-73 280.8 397 41.8
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 3.1e-73 280.4 441 41.0
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 5.3e-73 279.6 407 40.8
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.9e-73 279.3 388 42.0
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 6.9e-73 279.3 448 39.5
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 2.6e-72 277.3 414 40.3
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 2.6e-72 277.3 385 41.6
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.6e-72 277.3 406 39.9
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 4.5e-72 276.6 445 38.2
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 4.5e-72 276.6 384 41.9
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 5.8e-72 276.2 393 41.0
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 1.0e-71 275.4 407 41.3
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 1.0e-71 275.4 393 40.7
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 1.0e-71 275.4 421 38.7
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.3e-71 275.0 383 41.8
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 3.8e-71 273.5 422 39.3
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 4.9e-71 273.1 384 41.7
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.4e-70 271.6 383 41.5
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 9.3e-70 268.9 419 39.1
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 9.3e-70 268.9 436 39.0
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.6e-69 268.1 391 40.9
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 4.6e-69 266.5 413 40.4
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 7.9e-69 265.8 397 39.8
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 2.3e-68 264.2 422 38.4
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 7.4e-67 259.2 381 40.2
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 5.3e-65 253.1 368 41.6
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.9e-65 252.7 418 39.0
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 2.0e-64 251.1 434 37.6
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 2.6e-64 250.8 443 36.8
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 4.5e-64 250.0 432 37.0
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 1.3e-63 248.4 477 34.4
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 1.3e-63 248.4 394 38.6
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.9e-63 247.3 383 38.4
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 3.8e-63 246.9 407 37.1
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 1.4e-62 245.0 455 36.3
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 9.3e-62 242.3 416 37.3
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 2.1e-61 241.1 407 35.1
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 2.7e-61 240.7 407 34.4
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.7e-61 240.7 380 38.2
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.7e-61 240.7 377 36.6
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 5.1e-60 236.5 407 34.6
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 5.1e-60 236.5 395 37.2
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 1.5e-59 235.0 402 34.8
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 5.7e-59 233.0 414 34.3
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 5.7e-59 233.0 414 34.8
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 9.7e-59 232.3 494 33.6
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.7e-58 231.5 411 34.5
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.2e-58 231.1 381 35.2
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 1.1e-57 228.8 387 37.0
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 1.8e-57 228.0 396 37.1
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 3.1e-57 227.3 396 34.1
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 4.1e-57 226.9 425 36.7
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 6.9e-57 226.1 414 34.1
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 6.9e-57 226.1 415 34.2
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.2e-56 225.3 402 33.8
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 2.6e-56 224.2 314 43.3
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.9e-56 223.0 167 66.5
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 2.9e-55 220.7 408 35.3
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 3.2e-54 217.2 359 36.5
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 5.5e-54 216.5 386 33.7
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 2.1e-53 214.5 472 32.0
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 6.1e-53 213.0 407 33.9
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.4e-52 211.8 407 33.9
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 6.7e-52 209.5 313 41.9
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 6.7e-52 209.5 433 30.9
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 7.4e-51 206.1 390 33.6
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 2.2e-50 204.5 436 30.7
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 2.2e-50 204.5 436 30.7
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 3.4e-48 197.2 193 54.4
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.9e-48 196.4 283 45.9
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 5.9e-48 196.4 390 32.6
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 5.9e-48 196.4 307 41.0
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 1.0e-47 195.7 390 32.6
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.0e-47 195.7 390 32.6
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 6.5e-47 193.0 390 32.3
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 8.5e-47 192.6 407 31.7
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.5e-46 191.0 126 74.6
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 9.4e-46 189.1 194 50.0
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.2e-45 188.7 369 35.8
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.1e-45 188.0 403 31.8
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 3.6e-45 187.2 338 37.0
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.4e-44 185.3 478 31.0
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 3.0e-44 184.1 384 30.5
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 3.7e-42 177.2 480 31.9
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 3.1e-41 174.1 353 33.4
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 3.1e-41 174.1 401 30.7
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 3.1e-41 174.1 220 45.5
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.1e-37 161.4 177 48.6
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 3.3e-35 154.1 99 71.7
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 4.4e-35 153.7 316 34.8
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 1.7e-34 151.8 212 43.9
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.4e-33 147.9 273 36.3
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.1e-33 147.5 181 47.0
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.9e-31 141.0 378 29.4
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 4.2e-30 137.1 86 77.9
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 7.2e-30 136.3 99 65.7
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 6.1e-29 133.3 314 32.2
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 5.2e-28 130.2 152 45.4
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 8.3e-26 122.9 234 32.9
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 7.0e-25 119.8 206 42.2
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.6e-21 108.6 65 80.0
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.5e-19 102.1 108 48.1
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 2.0e-19 101.7 129 45.7
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.4e-19 100.5 61 82.0
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.8e-18 97.8 100 45.0
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 6.3e-18 96.7 169 34.3
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 3.5e-16 90.9 66 63.6
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 7.8e-16 89.7 64 64.1
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 2.3e-15 88.2 65 63.1
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 5.0e-15 87.0 85 51.8
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 6.6e-15 86.7 60 66.7
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 6.6e-15 86.7 62 67.7
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 1.5e-14 85.5 109 40.4
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 2.5e-14 84.7 389 23.4
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 3.6e-13 80.9 112 35.7
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 4.7e-13 80.5 94 46.8
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 2.6e-11 74.7 457 21.9
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 9.2e-09 66.2 88 42.0
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 9.2e-09 66.2 93 43.0
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 4.6e-08 63.9 38 71.1
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 6.0e-08 63.5 70 50.0
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 3.9e-07 60.8 94 35.1
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 5.0e-07 60.5 96 35.4


User provided reference genes

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