Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07556 Vaccinium macrocarpon HOM05D000611 ORTHO05D000809 1.2e-52 209.5 104 100.0
vmacro12778 Vaccinium macrocarpon HOM05D000611 ORTHO05D000809 4.6e-36 154.5 104 75.0
vmacro07555 Vaccinium macrocarpon HOM05D000611 ORTHO05D000809 6.9e-32 140.6 95 74.7
Rhsim03G0053100 Rhododendron simsii HOM05D000611 ORTHO05D000809 2.1e-25 119.0 101 64.4
Actinidia03940 Actinidia chinensis HOM05D000611 ORTHO05D000809 8.4e-22 107.1 89 60.7
Actinidia37799 Actinidia chinensis HOM05D000611 ORTHO05D000809 8.4e-22 107.1 88 61.4
CSS0001405 Camellia sinensis var. sinensis HOM05D000611 ORTHO05D000809 7.4e-18 94.0 114 52.6
FAN23G0451 Fragaria x ananassa HOM05D000611 ORTHO05D000809 9.7e-18 93.6 110 48.2
Lj1C1056G10 Lonicera japonica HOM05D000611 ORTHO05D000809 8.2e-17 90.5 72 62.5
Prupe.3G134100 Prunus persica HOM05D000611 ORTHO05D000809 8.2e-17 90.5 107 49.5
Haze_20458 Corylus avellana HOM05D000611 ORTHO05D000809 1.1e-16 90.1 101 50.5
Hma1.2p1_0768F.1_g215620 Hydrangea macrophylla HOM05D000611 ORTHO05D000809 1.1e-16 90.1 67 61.2
Nn6g32381 Nelumbo nucifera HOM05D000611 ORTHO05D000809 1.1e-16 90.1 102 52.0
arahy.Tifrunner.gnm1.ann1.70YL0N Arachis hypogaea HOM05D000611 ORTHO05D000809 1.4e-16 89.7 80 55.0
Dinv05571 Davidia involucrata HOM05D000611 ORTHO05D000809 1.8e-16 89.4 98 49.0
FvH4_1g25060 Fragaria vesca HOM05D000611 ORTHO05D000809 2.4e-16 89.0 110 45.5
FAN05G0188 Fragaria x ananassa HOM05D000611 ORTHO05D000809 2.4e-16 89.0 111 45.9
Lj1A1057G22 Lonicera japonica HOM05D000611 ORTHO05D000809 2.4e-16 89.0 69 63.8
arahy.Tifrunner.gnm1.ann1.DX8RYA Arachis hypogaea HOM05D000611 ORTHO05D000809 3.1e-16 88.6 80 53.8
FAN14G4558 Fragaria x ananassa HOM05D000611 ORTHO05D000809 3.1e-16 88.6 113 45.1
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 6.9e-16 87.4 109 47.7
MD17G1235600 Malus domestica HOM05D000611 ORTHO05D000809 9.0e-16 87.0 98 48.0
Psat1g094760 Pisum sativum HOM05D000611 ORTHO05D000809 9.0e-16 87.0 89 50.6
FAN19G1640 Fragaria x ananassa HOM05D000611 ORTHO05D000809 1.2e-15 86.7 110 44.5
FAN21G3967 Fragaria x ananassa HOM05D000611 ORTHO05D000809 1.2e-15 86.7 87 52.9
Prupe.3G133800 Prunus persica HOM05D000611 ORTHO05D000809 1.5e-15 86.3 103 46.6
CiPaw.09G165000 Carya illinoinensis HOM05D000611 ORTHO05D000809 2.0e-15 85.9 92 50.0
Glyma.05G090000 Glycine max HOM05D000611 ORTHO05D000809 2.0e-15 85.9 110 43.6
PGR142G2002 Punica granatum HOM05D000611 ORTHO05D000809 2.0e-15 85.9 72 54.2
VMungo0464G0567 Vigna mungo HOM05D000611 ORTHO05D000809 2.6e-15 85.5 109 46.8
MBI11_g45238_MAGBIO Magnolia biondii HOM05D000611 ORTHO05D000809 3.4e-15 85.1 67 56.7
SalBow3G0482 Salvia bowleyana HOM05D000611 ORTHO05D000809 3.4e-15 85.1 94 47.9
TWI34G2036 Tripterygium wilfordii HOM05D000611 ORTHO05D000809 4.5e-15 84.7 100 45.0
Duzib128G1685 Durio zibethinus HOM05D000611 ORTHO05D000809 7.7e-15 84.0 72 55.6
Lalb_Chr21g0317261 Lupinus albus HOM05D000611 ORTHO05D000809 7.7e-15 84.0 72 54.2
SGA_v2.0_scaffold31G12798 Striga asiatica HOM05D000611 ORTHO05D000809 7.7e-15 84.0 111 45.0
Gorai.013G114500 Gossypium raimondii HOM05D000611 ORTHO05D000809 1.0e-14 83.6 87 48.3
Lj2g0026825 Lotus japonicus HOM05D000611 ORTHO05D000809 1.0e-14 83.6 65 60.0
Gohir.D13G102300 Gossypium hirsutum HOM05D000611 ORTHO05D000809 1.3e-14 83.2 87 47.1
CAN.G245.3 Capsicum annuum HOM05D000611 ORTHO05D000809 1.7e-14 82.8 88 53.4
AUR62036263 Chenopodium quinoa HOM05D000611 ORTHO05D000809 1.7e-14 82.8 72 55.6
AUR62039714 Chenopodium quinoa HOM05D000611 ORTHO05D000809 1.7e-14 82.8 72 55.6
COL.COLO4_28606 Corchorus olitorius HOM05D000611 ORTHO05D000809 1.7e-14 82.8 88 45.5
RcHm_v2.0_Chr2g0127561 Rosa chinensis HOM05D000611 ORTHO05D000809 1.7e-14 82.8 85 50.6
Thecc.05G244900 Theobroma cacao HOM05D000611 ORTHO05D000809 1.7e-14 82.8 72 52.8
Phvul.004G051700 Phaseolus vulgaris HOM05D000611 ORTHO05D000809 2.2e-14 82.4 65 58.5
FAN11G0993 Fragaria x ananassa HOM05D000611 ORTHO05D000809 2.9e-14 82.0 86 48.8
Gohir.A13G097600 Gossypium hirsutum HOM05D000611 ORTHO05D000809 2.9e-14 82.0 87 47.1
FAN09G1078 Fragaria x ananassa HOM05D000611 ORTHO05D000809 5.0e-14 81.3 70 54.3
Eucgr.K01507 Eucalyptus grandis HOM05D000611 ORTHO05D000809 6.5e-14 80.9 70 54.3
QL07p018587 Quercus lobata HOM05D000611 ORTHO05D000809 6.5e-14 80.9 108 47.2
Nitab4.5_0000098g0090 Nicotiana tabacum HOM05D000611 ORTHO05D000809 8.5e-14 80.5 107 49.5
Rhsim03G0158900 Rhododendron simsii HOM05D001626 ORTHO05D001563 8.5e-14 80.5 64 57.8
DCAR_012285 Daucus carota HOM05D000611 ORTHO05D000809 1.1e-13 80.1 71 53.5
Sabra13G0054400 Salix brachista HOM05D000611 ORTHO05D000809 1.1e-13 80.1 67 55.2
EL10Ac5g11756 Beta vulgaris HOM05D000611 ORTHO05D000809 1.4e-13 79.7 67 59.7
CsaV3_3G043040 Cucumis sativus L. HOM05D000611 ORTHO05D000809 1.4e-13 79.7 112 44.6
Potri.019G038226 Populus trichocarpa HOM05D000611 ORTHO05D000809 1.4e-13 79.7 84 47.6
TPR.G29870 Trifolium pratense HOM05D000611 ORTHO05D000809 1.4e-13 79.7 105 43.8
MSTRG.19353 Avicennia marina HOM05D000611 ORTHO05D000809 1.9e-13 79.3 72 54.2
Cfa008667 Carpinus fangiana HOM05D000611 ORTHO05D000809 1.9e-13 79.3 97 46.4
Ciclev10020214m.g Citrus clementina HOM05D000611 ORTHO05D000809 2.5e-13 79.0 67 56.7
Solyc01g056600.2 Solanum lycopersicum HOM05D000611 ORTHO05D000809 2.5e-13 79.0 68 58.8
Medtr6g028020 Medicago truncatula HOM05D000611 ORTHO05D000809 3.2e-13 78.6 90 46.7
Potri.013G061500 Populus trichocarpa HOM05D000611 ORTHO05D000809 3.2e-13 78.6 104 42.3
SGA_v2.0_scaffold112G31647 Striga asiatica HOM05D000611 ORTHO05D000809 3.2e-13 78.6 96 46.9
MELO3C026605.2 Cucumis melo HOM05D000611 ORTHO05D000809 4.2e-13 78.2 94 45.7
Nitab4.5_0001606g0050 Nicotiana tabacum HOM05D000611 ORTHO05D000809 4.2e-13 78.2 93 48.4
PSO339G6700 Papaver somniferum HOM05D000611 ORTHO05D000809 4.2e-13 78.2 98 41.8
Oeu029558.1 Olea europaea HOM05D000611 ORTHO05D000809 5.5e-13 77.8 92 43.5
Potri.019G038100 Populus trichocarpa HOM05D000611 ORTHO05D000809 7.2e-13 77.4 98 46.9
Gohir.D07G118900 Gossypium hirsutum HOM05D000611 ORTHO05D000809 9.4e-13 77.0 74 52.7
Gorai.001G127900 Gossypium raimondii HOM05D000611 ORTHO05D000809 9.4e-13 77.0 74 52.7
Lalb_Chr02g0157271 Lupinus albus HOM05D000611 ORTHO05D000809 9.4e-13 77.0 97 41.2
Potri.019G037900 Populus trichocarpa HOM05D000611 ORTHO05D000809 9.4e-13 77.0 83 49.4
HPP92_001900 Vanilla planifolia HOM05D000611 ORTHO05D000809 9.4e-13 77.0 85 45.9
COL.COLO4_25321 Corchorus olitorius HOM05D000611 ORTHO05D000809 1.2e-12 76.6 82 45.1
DCAR_012287 Daucus carota HOM05D000611 ORTHO05D000809 1.2e-12 76.6 71 52.1
Duzib168G2209 Durio zibethinus HOM05D000611 ORTHO05D000809 1.2e-12 76.6 83 48.2
Cc06_g07300 Coffea canephora HOM05D000611 ORTHO05D000809 1.6e-12 76.3 104 38.5
Sopen01g020540 Solanum pennellii HOM05D000611 ORTHO05D000809 1.6e-12 76.3 95 49.5
Thecc.09G265700 Theobroma cacao HOM05D000611 ORTHO05D000809 2.1e-12 75.9 82 45.1
Manes.09G138400 Manihot esculenta HOM05D000611 ORTHO05D000809 2.7e-12 75.5 67 49.3
Peaxi162Scf00061g03010 Petunia axillaris HOM05D000611 ORTHO05D000809 2.7e-12 75.5 67 53.7
ClCG10G013620 Citrullus lanatus HOM05D000611 ORTHO05D000809 3.6e-12 75.1 79 48.1
Migut.J00764 Erythranthe guttata HOM05D000611 ORTHO05D000809 3.6e-12 75.1 72 51.4
CAN.G794.12 Capsicum annuum HOM05D000611 ORTHO05D000809 4.6e-12 74.7 68 51.5
TPR.G39533 Trifolium pratense HOM05D000611 ORTHO05D000809 4.6e-12 74.7 90 46.7
Hund10768 Selenicereus undatus HOM05D000611 ORTHO05D000809 7.9e-12 73.9 71 53.5
Aqoxy1G00542 Aquilegia oxysepala HOM05D000611 ORTHO05D000809 1.0e-11 73.6 104 40.4
CANSAT25G3146 Cannabis sativa HOM05D000611 ORTHO05D000809 1.0e-11 73.6 72 47.2
Prupe.6G151600 Prunus persica HOM05D000611 ORTHO05D000809 1.0e-11 73.6 74 47.3
TAR633G1322 Trochodendron aralioides HOM05D000611 ORTHO05D000809 1.0e-11 73.6 98 44.9
VMungo0540G2129 Vigna mungo HOM05D000611 ORTHO05D000809 1.0e-11 73.6 70 51.4
ATR0697G034 Amborella trichopoda HOM05D000611 ORTHO05D000809 1.8e-11 72.8 97 41.2
DCAR_009081 Daucus carota HOM05D000611 ORTHO05D000809 1.8e-11 72.8 94 43.6
Ciclev10018273m.g Citrus clementina HOM05D000611 ORTHO05D000809 2.3e-11 72.4 72 44.4
GSVIVG01029969001 Vitis vinifera HOM05D000611 ORTHO05D000809 2.3e-11 72.4 105 41.9
Aqoxy3G00859 Aquilegia oxysepala HOM05D000611 ORTHO05D000809 3.9e-11 71.6 72 44.4
Sed0023110 Sechium edule HOM05D000611 ORTHO05D000809 3.9e-11 71.6 79 44.3
TPR.G36395 Trifolium pratense HOM05D000611 ORTHO05D000809 3.9e-11 71.6 74 48.6
unitig_21.g20309 Utricularia gibba HOM05D000611 ORTHO05D000809 3.9e-11 71.6 68 54.4
Lj2C893G4 Lonicera japonica HOM05D000611 ORTHO05D000809 5.1e-11 71.2 65 49.2
Os01g0772000 Oryza sativa ssp. japonica HOM05D000611 ORTHO05D000809 5.1e-11 71.2 73 52.1
Potri.019G038184 Populus trichocarpa HOM05D000611 ORTHO05D000809 5.1e-11 71.2 99 38.4
RcHm_v2.0_Chr5g0049631 Rosa chinensis HOM05D000611 ORTHO05D000809 5.1e-11 71.2 114 37.7
Solyc01g009190.3 Solanum lycopersicum HOM05D000611 ORTHO05D000809 6.7e-11 70.9 65 50.8
PGSC0003DMG400008709 Solanum tuberosum HOM05D000611 ORTHO05D000809 6.7e-11 70.9 65 50.8
FvH4_3g27052 Fragaria vesca HOM05D000611 ORTHO05D000809 8.8e-11 70.5 75 45.3
FAN11G3944 Fragaria x ananassa HOM05D000611 ORTHO05D000809 8.8e-11 70.5 75 45.3
Medtr3g079650 Medicago truncatula HOM05D000611 ORTHO05D000809 1.1e-10 70.1 80 45.0
Medtr6g092600 Medicago truncatula HOM05D000611 ORTHO05D000809 1.1e-10 70.1 71 47.9
Oeu032079.1 Olea europaea HOM05D000700 ORTHO05D000397 1.1e-10 70.1 92 40.2
Psat5g113280 Pisum sativum HOM05D000611 ORTHO05D000809 1.1e-10 70.1 88 42.0
Rhsim01G0197600 Rhododendron simsii HOM05D000611 ORTHO05D000809 1.5e-10 69.7 65 50.8
THA.LOC104823780 Tarenaya hassleriana HOM05D000611 ORTHO05D000809 1.5e-10 69.7 67 46.3
Atru.chr3.3017 Acer truncatum HOM05D000611 ORTHO05D000809 2.0e-10 69.3 81 43.2
Cfa010236 Carpinus fangiana HOM05D000611 ORTHO05D000809 2.0e-10 69.3 65 49.2
Cc00_g06240 Coffea canephora HOM05D000611 ORTHO05D000809 2.0e-10 69.3 65 50.8
MD11G1178800 Malus domestica HOM05D000611 ORTHO05D000809 2.0e-10 69.3 74 44.6
QL01p018552 Quercus lobata HOM05D000611 ORTHO05D000809 2.0e-10 69.3 65 49.2
Ah.08g222560 Amaranthus hybridus HOM05D000611 ORTHO05D000809 3.3e-10 68.6 64 50.0
EL10Ac2g02837 Beta vulgaris HOM05D000611 ORTHO05D000809 3.3e-10 68.6 65 53.8
Lsat_1_v5_gn_3_114521 Lactuca sativa HOM05D000611 ORTHO05D000809 3.3e-10 68.6 67 49.3
Nitab4.5_0007747g0020 Nicotiana tabacum HOM05D000611 ORTHO05D000809 3.3e-10 68.6 65 49.2
EL10Ac7g16245 Beta vulgaris HOM05D000611 ORTHO05D000809 4.3e-10 68.2 64 46.9
AUR62020186 Chenopodium quinoa HOM05D000611 ORTHO05D000809 4.3e-10 68.2 77 48.1
Psat5g113120 Pisum sativum HOM05D000611 ORTHO05D000809 5.7e-10 67.8 88 40.9
Sabra19G0049100 Salix brachista HOM05D000611 ORTHO05D000809 5.7e-10 67.8 98 41.8
Dinv32137 Davidia involucrata HOM05D000611 ORTHO05D000809 9.7e-10 67.0 65 47.7
Migut.N02423 Erythranthe guttata HOM05D000611 ORTHO05D000809 9.7e-10 67.0 74 41.9
Phvul.006G039700 Phaseolus vulgaris HOM05D000611 ORTHO05D000809 9.7e-10 67.0 65 49.2
Lj6g0018938 Lotus japonicus HOM05D000611 ORTHO05D000809 1.3e-09 66.6 78 43.6
Glyma.08G313900 Glycine max HOM05D000611 ORTHO05D000809 1.7e-09 66.2 65 53.8
Potri.009G152900 Populus trichocarpa HOM05D000611 ORTHO05D000809 1.7e-09 66.2 84 40.5
Atru.chr3.3020 Acer truncatum HOM05D000611 ORTHO05D000809 2.8e-09 65.5 81 42.0
AUR62001594 Chenopodium quinoa HOM05D000611 ORTHO05D000809 2.8e-09 65.5 82 46.3
Ca_16263_v3 Cicer arietinum L. HOM05D000611 ORTHO05D000809 2.8e-09 65.5 65 49.2
TWI79G1772 Tripterygium wilfordii HOM05D000611 ORTHO05D000809 2.8e-09 65.5 64 48.4
Zm00001eb151900 Zea mays HOM05D000611 ORTHO05D000809 2.8e-09 65.5 89 46.1
FvH4_3g24990 Fragaria vesca HOM05D000537 ORTHO05D000415 4.8e-09 64.7 97 42.3
Lalb_Chr19g0133021 Lupinus albus HOM05D000611 ORTHO05D000809 4.8e-09 64.7 65 49.2
Hma1.2p1_1288F.1_g273320 Hydrangea macrophylla HOM05D000611 ORTHO05D000809 6.3e-09 64.3 66 48.5
Psat5g109080 Pisum sativum HOM05D000611 ORTHO05D000809 6.3e-09 64.3 103 37.9
RcHm_v2.0_Chr5g0045031 Rosa chinensis HOM05D000611 ORTHO05D000809 6.3e-09 64.3 100 37.0
ECA240G2968 Erigeron canadensis HOM05D000611 ORTHO05D000809 1.1e-08 63.5 65 47.7
Medtr6g092580 Medicago truncatula HOM05D000611 ORTHO05D000809 1.1e-08 63.5 69 44.9
FAN11G1167 Fragaria x ananassa HOM05D000537 ORTHO05D000415 1.4e-08 63.2 97 41.2
Lsat_1_v5_gn_3_114541 Lactuca sativa HOM05D000611 ORTHO05D000809 1.4e-08 63.2 107 35.5
PGR102G2603 Punica granatum HOM05D000611 ORTHO05D000809 1.4e-08 63.2 72 43.1
RcHm_v2.0_Chr5g0044881 Rosa chinensis HOM05D000537 ORTHO05D000415 1.8e-08 62.8 90 38.9
Medtr3g079670 Medicago truncatula HOM05D000611 ORTHO05D000809 2.4e-08 62.4 81 43.2
SGA_v2.0_scaffold16G07557 Striga asiatica HOM05D000611 ORTHO05D000809 2.4e-08 62.4 102 35.3
FAN25G2952 Fragaria x ananassa HOM05D000537 ORTHO05D000415 4.1e-08 61.6 97 40.2
SHI14934 Sapria himalayana HOM05D000611 ORTHO05D000809 5.3e-08 61.2 71 45.1
FAN16G1233 Fragaria x ananassa HOM05D000537 ORTHO05D000415 9.1e-08 60.5 97 39.2
RcHm_v2.0_Chr2g0085841 Rosa chinensis HOM05D000537 ORTHO05D000415 9.1e-08 60.5 87 42.5
FAN21G2893 Fragaria x ananassa HOM05D000537 ORTHO05D000415 1.2e-07 60.1 97 39.2
Medtr3g079720 Medicago truncatula HOM05D000611 ORTHO05D000809 1.5e-07 59.7 101 37.6
Zm00001eb332140 Zea mays HOM05D000611 ORTHO05D000809 2.0e-07 59.3 94 41.5
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 5.9e-07 57.8 83 38.6
RcHm_v2.0_Chr5g0044861 Rosa chinensis HOM05D000537 ORTHO05D000809 7.7e-07 57.4 70 40.0
SMO171G0094 Selaginella moellendorffii HOM05D000611 ORTHO05D007148 7.7e-07 57.4 68 41.2
EL10Ac2g02839 Beta vulgaris HOM05D000611 ORTHO05D000809 1.7e-06 56.2 70 41.4
Cpa.g.sc161.9 Carica papaya HOM05D000611 ORTHO05D000809 1.7e-06 56.2 73 41.1
EL10Ac2g02838 Beta vulgaris HOM05D000611 ORTHO05D000809 2.2e-06 55.8 46 58.7
EL10Ac9g22897 Beta vulgaris HOM05D000611 ORTHO05D004334 2.9e-06 55.5 71 39.4
FAN25G3834 Fragaria x ananassa HOM05D000611 ORTHO05D000809 2.9e-06 55.5 58 44.8
FAN28G1085 Fragaria x ananassa HOM05D000537 ORTHO05D000415 6.5e-06 54.3 86 39.5
Lalb_Chr14g0364631 Lupinus albus HOM05D000611 ORTHO05D000809 6.5e-06 54.3 65 38.5
Os09g0508500 Oryza sativa ssp. japonica HOM05D000611 ORTHO05D000809 8.5e-06 53.9 68 39.7


User provided reference genes

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