Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 0.0e+00 2092.8 1051 100.0
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 0.0e+00 1507.7 882 86.8
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 0.0e+00 1303.5 884 75.2
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1301.2 888 75.0
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1280.8 921 72.0
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 0.0e+00 1109.7 893 65.1
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 7.9e-309 1063.9 751 71.9
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 7.4e-299 1030.8 888 62.7
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 2.5e-294 1015.8 894 60.3
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 1.4e-289 1000.0 890 61.1
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 3.1e-289 998.8 888 59.0
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.0e-287 993.8 891 59.3
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 7.9e-285 984.2 890 58.9
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 6.3e-282 974.5 899 58.4
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 1.5e-280 969.9 883 58.9
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 1.7e-279 966.5 889 57.1
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 5.0e-279 964.9 869 57.5
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.9e-278 963.0 884 58.0
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 5.5e-278 961.4 886 59.4
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 7.9e-277 957.6 894 58.2
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.4e-276 956.8 877 60.2
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.8e-276 956.4 886 59.5
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.9e-276 955.3 893 57.7
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.1e-276 954.9 884 57.6
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.7e-274 949.9 885 57.6
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 2.8e-274 949.1 893 57.3
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 6.3e-274 948.0 886 57.8
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 2.4e-273 946.0 890 57.6
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 5.3e-273 944.9 893 57.1
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 2.9e-271 939.1 885 56.7
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 8.5e-271 937.6 890 57.1
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 3.2e-270 935.6 888 57.2
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.9e-269 931.0 884 56.8
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 6.7e-268 927.9 884 56.6
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 1.3e-263 913.7 893 56.2
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 3.3e-259 899.0 881 56.4
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 3.3e-259 899.0 753 62.3
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 4.4e-259 898.7 903 55.9
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 3.7e-258 895.6 887 54.8
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 5.3e-257 891.7 886 53.4
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 1.6e-256 890.2 836 56.5
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 2.0e-256 889.8 894 54.3
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 4.0e-252 875.5 901 54.3
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 8.8e-252 874.4 891 54.2
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 7.5e-251 871.3 891 53.5
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 5.4e-249 865.1 922 54.2
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 8.5e-247 857.8 653 67.7
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 2.0e-243 846.7 887 52.2
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 4.4e-243 845.5 956 50.6
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 7.0e-241 838.2 890 51.8
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 7.0e-241 838.2 890 51.7
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 2.0e-240 836.6 953 49.8
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 7.7e-240 834.7 885 50.6
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 1.0e-239 834.3 871 54.2
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 3.8e-239 832.4 888 51.8
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 8.6e-239 831.2 887 51.2
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 5.7e-235 818.5 889 50.2
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 1.8e-233 813.5 941 50.2
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 5.4e-233 812.0 854 53.6
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.2e-232 810.8 892 52.2
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 7.8e-232 808.1 864 50.7
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 3.3e-230 802.7 890 50.6
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 9.5e-230 801.2 886 49.4
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 1.6e-229 800.4 888 50.9
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 3.6e-229 799.3 897 48.9
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 8.0e-229 798.1 878 49.8
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 8.0e-229 798.1 888 50.1
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.2e-227 794.3 886 48.9
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 5.8e-227 792.0 890 49.3
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 6.4e-226 788.5 907 49.4
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 8.3e-226 788.1 735 58.9
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.9e-225 786.9 889 49.8
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 1.9e-225 786.9 886 49.0
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 3.0e-223 779.6 938 47.7
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 6.4e-218 761.9 891 48.1
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.4e-217 760.8 703 56.6
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 6.0e-216 755.4 891 47.5
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 1.0e-215 754.6 891 47.7
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 5.1e-215 752.3 891 47.5
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 1.5e-214 750.7 891 47.0
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 2.5e-214 750.0 891 47.1
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 4.3e-214 749.2 839 50.1
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 5.6e-214 748.8 893 47.0
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.1e-213 746.9 910 47.3
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 2.1e-213 746.9 900 48.7
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 6.8e-212 741.9 887 47.2
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 2.4e-209 733.4 735 53.5
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 9.2e-209 731.5 862 48.5
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 2.8e-205 719.9 703 55.2
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 8.9e-204 714.9 889 46.8
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.2e-200 704.5 886 46.4
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 5.1e-199 699.1 889 45.7
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 6.6e-199 698.7 803 47.1
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 8.1e-197 691.8 889 45.9
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 1.2e-195 688.0 710 53.2
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 3.8e-194 682.9 626 57.0
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.9e-191 672.9 861 45.8
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 9.0e-188 661.8 894 43.0
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 9.0e-188 661.8 677 53.0
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 9.9e-187 658.3 707 51.5
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 4.9e-186 656.0 886 45.0
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 7.1e-185 652.1 894 44.6
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.4e-171 606.7 685 50.9
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.3e-167 594.7 883 40.9
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 4.3e-166 589.7 705 46.8
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 1.4e-159 568.2 652 48.0
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 3.2e-153 547.0 783 40.6
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.2e-144 518.5 745 42.3
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 2.8e-141 507.3 911 38.5
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 3.0e-135 487.3 559 49.6
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 3.7e-133 480.3 887 35.1
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 1.0e-127 462.2 690 39.6
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.3e-122 444.5 555 43.8
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 3.0e-114 417.5 596 40.8
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 5.2e-111 406.8 761 37.8
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 7.8e-107 392.9 259 76.4
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 4.6e-99 367.1 822 32.7
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 1.3e-98 365.5 238 79.4
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.2e-96 359.0 241 76.3
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.1e-87 329.3 240 68.3
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 8.4e-85 319.7 954 28.0
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 4.6e-83 313.9 736 31.9
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 3.9e-82 310.8 962 29.1
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 3.9e-82 310.8 962 29.1
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 1.5e-81 308.9 521 35.9
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 5.3e-79 300.4 407 44.7
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 2.0e-78 298.5 193 78.8
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 6.0e-75 287.0 192 75.5
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 1.4e-71 275.8 194 68.0
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 5.5e-68 263.8 351 41.3
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 1.3e-66 259.2 194 68.0
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 2.5e-65 255.0 187 66.8
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 7.1e-60 236.9 323 42.7
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.8e-58 232.3 205 54.1
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 8.7e-58 229.9 771 27.9
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.2e-54 219.5 293 47.1
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 3.4e-54 218.0 244 48.4
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 2.5e-49 201.8 144 75.7
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 9.7e-49 199.9 195 48.7
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 4.5e-46 191.0 183 51.9
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 7.7e-46 190.3 335 36.7
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.0e-45 189.9 235 46.8
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 6.7e-42 177.2 232 44.4
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 9.7e-41 173.3 143 65.0
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.3e-40 172.9 236 45.8
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.7e-38 163.7 170 47.6
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 8.5e-37 160.2 108 73.1
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 1.2e-35 156.4 182 47.8
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 2.5e-28 132.1 471 28.0
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 3.6e-27 128.3 85 78.8
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.3e-26 125.6 297 31.6
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 8.8e-26 123.6 92 64.1
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 5.7e-25 120.9 92 62.0
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 4.1e-23 114.8 97 68.0
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 9.1e-23 113.6 81 71.6
vmacro21925 Vaccinium macrocarpon HOM05D001878 ORTHO05D001737 9.1e-23 113.6 104 53.8
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 1.7e-21 109.4 227 32.6
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 1.7e-21 109.4 187 38.0
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 8.5e-21 107.1 203 37.4
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.7e-16 92.8 119 47.9
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 2.5e-12 79.0 121 34.7
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 1.7e-08 66.2 50 62.0
CANSAT64G2436 Cannabis sativa HOM05D000003 ORTHO05D000167 2.4e-07 62.4 95 35.8
CANSAT21G0999 Cannabis sativa HOM05D000003 ORTHO05D000004 3.1e-07 62.0 95 35.8
CANSAT35G1565 Cannabis sativa HOM05D000003 ORTHO05D000167 2.0e-06 59.3 95 34.7
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.7e-06 58.9 85 37.6
CANSAT56G0969 Cannabis sativa HOM05D000003 ORTHO05D000167 4.5e-06 58.2 95 34.7


User provided reference genes

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