Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 4.4e-92 341.3 173 100.0
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 1.5e-10 70.5 44 79.5
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 1.5e-10 70.5 44 79.5
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 5.5e-10 68.6 44 77.3
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 5.5e-10 68.6 44 75.0
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 5.5e-10 68.6 44 77.3
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 9.4e-10 67.8 51 68.6
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 1.6e-09 67.0 51 66.7
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 3.6e-09 65.9 44 72.7
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 3.6e-09 65.9 44 72.7
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 4.7e-09 65.5 44 68.2
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 4.7e-09 65.5 44 70.5
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 6.1e-09 65.1 44 68.2
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 6.1e-09 65.1 44 70.5
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 6.1e-09 65.1 44 68.2
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 6.1e-09 65.1 44 68.2
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 6.1e-09 65.1 44 68.2
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 8.0e-09 64.7 44 70.5
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 1.0e-08 64.3 44 70.5
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 1.0e-08 64.3 44 70.5
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 1.0e-08 64.3 43 69.8
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 2.3e-08 63.2 51 62.7
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 2.3e-08 63.2 55 58.2
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 2.3e-08 63.2 44 68.2
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 2.3e-08 63.2 44 68.2
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 3.0e-08 62.8 45 68.9
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 3.0e-08 62.8 58 56.9
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 3.0e-08 62.8 44 68.2
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 3.0e-08 62.8 44 65.9
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 4.0e-08 62.4 44 70.5
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 4.0e-08 62.4 43 67.4
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 4.0e-08 62.4 33 84.8
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 5.2e-08 62.0 44 65.9
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 5.2e-08 62.0 44 65.9
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 5.2e-08 62.0 44 65.9
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 5.2e-08 62.0 44 65.9
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 5.2e-08 62.0 44 68.2
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 5.2e-08 62.0 44 65.9
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 5.2e-08 62.0 44 65.9
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 5.2e-08 62.0 44 68.2
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 6.8e-08 61.6 52 61.5
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 6.8e-08 61.6 44 65.9
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 6.8e-08 61.6 44 65.9
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 6.8e-08 61.6 44 65.9
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 6.8e-08 61.6 44 65.9
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 8.8e-08 61.2 41 68.3
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 8.8e-08 61.2 44 68.2
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 8.8e-08 61.2 44 68.2
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 8.8e-08 61.2 44 68.2
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 8.8e-08 61.2 44 70.5
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 1.2e-07 60.8 42 69.0
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 1.2e-07 60.8 44 63.6
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 1.2e-07 60.8 44 63.6
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.5e-07 60.5 44 68.2
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.5e-07 60.5 44 68.2
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 1.5e-07 60.5 34 76.5
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 2.0e-07 60.1 44 65.9
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 2.0e-07 60.1 44 65.9
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 2.0e-07 60.1 34 82.4
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 2.0e-07 60.1 44 68.2
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 2.0e-07 60.1 33 75.8
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 2.6e-07 59.7 44 59.1
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 2.6e-07 59.7 44 68.2
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 3.4e-07 59.3 44 68.2
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 3.4e-07 59.3 44 68.2
PSO447G0101 Papaver somniferum HOM05D004585 ORTHO05D037280 3.4e-07 59.3 33 75.8
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 4.4e-07 58.9 44 63.6
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 5.7e-07 58.5 44 63.6
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 5.7e-07 58.5 44 63.6
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 5.7e-07 58.5 34 79.4
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 5.7e-07 58.5 44 61.4
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 5.7e-07 58.5 44 63.6
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 7.5e-07 58.2 92 41.3
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 7.5e-07 58.2 44 61.4
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 9.8e-07 57.8 44 63.6
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.3e-06 57.4 44 61.4
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 1.3e-06 57.4 34 70.6
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 1.7e-06 57.0 44 63.6
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 2.2e-06 56.6 44 63.6
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 2.2e-06 56.6 44 65.9
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 2.8e-06 56.2 44 63.6
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 2.8e-06 56.2 44 61.4
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 3.7e-06 55.8 44 61.4
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 3.7e-06 55.8 44 61.4
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 4.9e-06 55.5 44 61.4
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 4.9e-06 55.5 44 59.1
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 4.9e-06 55.5 34 70.6
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 6.3e-06 55.1 44 59.1
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 6.3e-06 55.1 44 59.1
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 6.3e-06 55.1 44 59.1
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 6.3e-06 55.1 34 70.6
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 6.3e-06 55.1 91 41.8
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 8.3e-06 54.7 44 63.6
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 8.3e-06 54.7 44 59.1
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 8.3e-06 54.7 33 69.7


User provided reference genes

Program Settings