Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 1.8e-153 545.8 269 100.0
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 4.4e-62 242.3 267 53.9
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 5.7e-62 241.9 262 55.7
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 1.7e-61 240.4 268 54.9
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.4e-60 236.5 264 53.8
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 4.1e-60 235.7 268 53.7
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 5.3e-60 235.3 266 53.4
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 9.1e-60 234.6 266 53.8
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 9.1e-60 234.6 264 53.0
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 1.2e-59 234.2 262 52.3
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 1.5e-59 233.8 266 53.8
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 3.4e-59 232.6 268 53.7
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 4.5e-59 232.3 268 53.0
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 7.7e-59 231.5 262 52.7
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 7.7e-59 231.5 266 54.1
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 1.0e-58 231.1 268 53.4
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 1.0e-58 231.1 264 52.7
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.3e-58 230.7 267 53.2
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.7e-58 230.3 261 51.3
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 1.7e-58 230.3 268 52.2
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 1.7e-58 230.3 268 52.2
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 2.9e-58 229.6 268 53.0
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 3.8e-58 229.2 268 52.2
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 3.8e-58 229.2 266 52.6
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 3.8e-58 229.2 261 51.0
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 5.0e-58 228.8 268 51.9
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 5.0e-58 228.8 268 53.0
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 5.0e-58 228.8 268 51.9
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 5.0e-58 228.8 268 51.5
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 5.0e-58 228.8 268 52.2
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 5.0e-58 228.8 268 51.9
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 6.5e-58 228.4 268 51.9
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 6.5e-58 228.4 268 52.2
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 6.5e-58 228.4 266 51.1
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 6.5e-58 228.4 268 52.2
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 8.5e-58 228.0 268 53.0
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 8.5e-58 228.0 268 51.9
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 1.1e-57 227.6 267 52.1
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 1.1e-57 227.6 267 52.1
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 1.1e-57 227.6 268 51.5
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 1.1e-57 227.6 261 52.5
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 1.4e-57 227.3 267 52.1
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.4e-57 227.3 268 52.2
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.4e-57 227.3 279 50.9
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 1.4e-57 227.3 266 52.3
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 1.9e-57 226.9 268 52.2
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 2.5e-57 226.5 219 61.2
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 3.2e-57 226.1 267 52.1
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 3.2e-57 226.1 261 52.9
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 3.2e-57 226.1 261 52.9
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 3.2e-57 226.1 266 51.5
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 3.2e-57 226.1 266 51.9
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 3.2e-57 226.1 268 52.2
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 3.2e-57 226.1 261 53.3
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 3.2e-57 226.1 261 53.3
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 3.2e-57 226.1 268 51.9
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 3.2e-57 226.1 267 50.9
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 4.2e-57 225.7 241 56.4
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 4.2e-57 225.7 268 52.6
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 4.2e-57 225.7 266 51.1
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 5.5e-57 225.3 268 53.0
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 7.2e-57 224.9 264 51.9
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 7.2e-57 224.9 261 52.5
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 9.4e-57 224.6 265 51.3
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 9.4e-57 224.6 268 51.1
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 9.4e-57 224.6 266 51.1
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.2e-56 224.2 268 51.5
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.2e-56 224.2 268 51.5
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.6e-56 223.8 268 51.5
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 1.6e-56 223.8 266 51.1
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 1.6e-56 223.8 268 51.5
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 2.1e-56 223.4 261 52.5
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 2.7e-56 223.0 264 51.5
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 2.7e-56 223.0 266 51.5
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 2.7e-56 223.0 268 51.9
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 3.6e-56 222.6 268 51.5
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 3.6e-56 222.6 264 51.1
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 3.6e-56 222.6 261 52.9
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 4.7e-56 222.2 268 52.2
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 4.7e-56 222.2 268 51.5
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 4.7e-56 222.2 265 50.6
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 6.1e-56 221.9 261 52.5
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 6.1e-56 221.9 268 51.5
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 6.1e-56 221.9 268 51.5
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 6.1e-56 221.9 263 51.0
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 7.9e-56 221.5 268 51.1
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 1.0e-55 221.1 268 50.4
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 1.4e-55 220.7 266 50.4
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 1.4e-55 220.7 266 50.4
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 1.4e-55 220.7 266 50.4
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 1.4e-55 220.7 266 50.4
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 1.4e-55 220.7 266 50.4
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 1.4e-55 220.7 265 50.6
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.8e-55 220.3 268 50.4
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.8e-55 220.3 268 50.4
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 1.8e-55 220.3 268 50.7
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 1.8e-55 220.3 265 50.2
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 1.8e-55 220.3 266 51.1
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 1.8e-55 220.3 268 50.0
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 2.3e-55 219.9 268 50.4
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 2.3e-55 219.9 263 50.6
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 2.3e-55 219.9 268 51.1
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 3.0e-55 219.5 268 50.4
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 3.9e-55 219.2 268 50.4
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 3.9e-55 219.2 268 50.7
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 3.9e-55 219.2 268 50.0
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 1.5e-54 217.2 263 49.4
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.0e-54 216.9 204 58.3
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 2.6e-54 216.5 268 50.7
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 2.6e-54 216.5 266 49.6
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 3.3e-54 216.1 266 49.6
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 4.4e-54 215.7 268 50.4
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 5.7e-54 215.3 212 59.0
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 7.4e-54 214.9 245 54.3
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 9.7e-54 214.5 266 50.4
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 1.3e-53 214.2 261 50.2
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 1.7e-53 213.8 268 50.7
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.7e-53 213.8 271 49.4
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 2.2e-53 213.4 268 48.9
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 2.8e-53 213.0 264 49.6
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 2.8e-53 213.0 261 50.2
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 3.7e-53 212.6 262 50.0
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 3.7e-53 212.6 268 49.3
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 4.8e-53 212.2 268 50.7
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 1.4e-52 210.7 267 49.4
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 1.8e-52 210.3 265 48.3
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 2.4e-52 209.9 262 50.4
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 2.4e-52 209.9 268 49.6
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 5.3e-52 208.8 269 48.3
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 1.2e-51 207.6 227 55.1
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.6e-51 207.2 210 58.1
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 1.6e-51 207.2 206 56.8
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 4.5e-51 205.7 212 58.0
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 7.7e-51 204.9 262 46.6
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 1.7e-50 203.8 266 47.7
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 2.2e-50 203.4 205 57.6
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 3.8e-50 202.6 209 56.5
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 3.8e-50 202.6 231 52.4
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 5.0e-50 202.2 271 48.0
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 5.0e-50 202.2 260 48.5
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 5.0e-50 202.2 270 48.9
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 6.5e-50 201.8 255 49.8
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 2.5e-49 199.9 261 47.1
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 3.2e-49 199.5 261 50.2
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 5.5e-49 198.7 262 48.9
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 2.1e-48 196.8 330 41.5
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 2.7e-48 196.4 262 48.5
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 4.0e-47 192.6 262 47.3
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 5.2e-47 192.2 261 46.7
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 1.2e-46 191.0 261 46.7
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 1.5e-46 190.7 260 46.5
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 7.5e-46 188.3 261 45.2
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 9.7e-46 188.0 277 46.2
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 2.8e-45 186.4 235 48.9
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 1.1e-44 184.5 268 42.2
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 1.8e-44 183.7 260 45.0
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 1.6e-43 180.6 204 52.0
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 1.7e-42 177.2 260 41.2
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 8.5e-42 174.9 237 46.0
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 1.1e-41 174.5 276 44.9
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 3.6e-40 169.5 217 50.7
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 6.1e-40 168.7 288 41.0
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 3.4e-38 162.9 258 40.7
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.2e-35 154.5 266 41.4
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 1.1e-28 131.3 111 67.6
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 4.7e-24 115.9 134 51.5
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 5.2e-23 112.5 134 52.2
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 6.8e-23 112.1 136 49.3
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.2e-22 111.3 134 52.2
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 5.7e-22 109.0 134 50.7
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 5.7e-22 109.0 129 50.4
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 9.8e-22 108.2 135 49.6
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 5.8e-14 82.4 231 26.0
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 4.9e-13 79.3 67 50.7
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 4.1e-12 76.3 67 49.3
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 1.2e-11 74.7 67 47.8
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 8.1e-08 62.0 56 53.6
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 1.8e-07 60.8 109 39.4
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 2.3e-07 60.5 148 28.4


User provided reference genes

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