Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 6.0e-98 360.9 192 100.0
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 1.1e-11 74.3 180 33.3
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 7.3e-11 71.6 198 33.3
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 2.1e-10 70.1 198 32.3
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 2.8e-10 69.7 68 55.9
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 2.8e-10 69.7 68 55.9
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 3.6e-10 69.3 68 57.4
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 6.1e-10 68.6 198 30.8
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 1.4e-09 67.4 190 31.6
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 1.4e-09 67.4 68 54.4
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 2.3e-09 66.6 198 30.3
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.3e-09 66.6 68 54.4
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 3.1e-09 66.2 67 55.2
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 3.1e-09 66.2 68 54.4
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 3.1e-09 66.2 68 54.4
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 3.1e-09 66.2 68 55.9
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 4.0e-09 65.9 68 54.4
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 4.0e-09 65.9 68 54.4
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 4.0e-09 65.9 68 54.4
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 4.0e-09 65.9 68 54.4
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 4.0e-09 65.9 68 54.4
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 4.0e-09 65.9 68 52.9
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 4.0e-09 65.9 68 52.9
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 4.0e-09 65.9 198 30.3
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 4.0e-09 65.9 67 55.2
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 4.0e-09 65.9 198 30.8
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 5.2e-09 65.5 68 52.9
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 5.2e-09 65.5 68 52.9
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 5.2e-09 65.5 68 52.9
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 5.2e-09 65.5 68 52.9
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 5.2e-09 65.5 68 52.9
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 5.2e-09 65.5 68 52.9
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 5.2e-09 65.5 68 52.9
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 5.2e-09 65.5 68 52.9
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 5.2e-09 65.5 197 29.9
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 5.2e-09 65.5 68 52.9
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 5.2e-09 65.5 68 52.9
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 5.2e-09 65.5 68 54.4
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 6.8e-09 65.1 190 31.1
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 6.8e-09 65.1 68 52.9
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 6.8e-09 65.1 198 30.8
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 6.8e-09 65.1 68 54.4
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 6.8e-09 65.1 68 54.4
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 6.8e-09 65.1 68 52.9
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 6.8e-09 65.1 68 54.4
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 8.9e-09 64.7 68 52.9
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 8.9e-09 64.7 68 52.9
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 8.9e-09 64.7 68 52.9
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 8.9e-09 64.7 68 52.9
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 8.9e-09 64.7 68 54.4
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 1.2e-08 64.3 198 29.8
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 1.2e-08 64.3 68 52.9
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 1.2e-08 64.3 198 30.3
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.2e-08 64.3 67 53.7
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 1.5e-08 63.9 198 29.8
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 1.5e-08 63.9 68 51.5
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 1.5e-08 63.9 68 52.9
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 1.5e-08 63.9 198 29.8
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 1.5e-08 63.9 61 59.0
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 2.0e-08 63.5 68 51.5
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 2.0e-08 63.5 68 52.9
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 2.0e-08 63.5 68 51.5
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 2.0e-08 63.5 68 52.9
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 2.6e-08 63.2 68 52.9
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 2.6e-08 63.2 68 51.5
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 2.6e-08 63.2 68 51.5
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 2.6e-08 63.2 59 59.3
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 2.6e-08 63.2 59 59.3
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 2.6e-08 63.2 68 48.5
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 2.6e-08 63.2 68 51.5
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 2.6e-08 63.2 60 56.7
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 3.4e-08 62.8 68 52.9
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 3.4e-08 62.8 68 51.5
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 3.4e-08 62.8 68 52.9
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 3.4e-08 62.8 67 50.7
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 3.4e-08 62.8 68 51.5
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 3.4e-08 62.8 68 52.9
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 3.4e-08 62.8 68 51.5
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 3.4e-08 62.8 60 58.3
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 4.4e-08 62.4 59 59.3
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 4.4e-08 62.4 68 51.5
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 4.4e-08 62.4 68 52.9
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 4.4e-08 62.4 198 29.3
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 4.4e-08 62.4 59 59.3
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 4.4e-08 62.4 68 50.0
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 4.4e-08 62.4 68 51.5
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 4.4e-08 62.4 68 52.9
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 4.4e-08 62.4 68 51.5
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 4.4e-08 62.4 60 55.0
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 4.4e-08 62.4 59 59.3
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 4.4e-08 62.4 68 48.5
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 4.4e-08 62.4 68 48.5
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 5.8e-08 62.0 189 30.7
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 5.8e-08 62.0 68 52.9
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 5.8e-08 62.0 59 59.3
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 5.8e-08 62.0 59 59.3
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 5.8e-08 62.0 68 51.5
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 5.8e-08 62.0 59 59.3
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 5.8e-08 62.0 68 50.0
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 5.8e-08 62.0 67 52.2
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 5.8e-08 62.0 67 49.3
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 5.8e-08 62.0 65 52.3
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 5.8e-08 62.0 65 52.3
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 5.8e-08 62.0 59 59.3
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 7.5e-08 61.6 68 51.5
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 7.5e-08 61.6 68 50.0
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 7.5e-08 61.6 68 51.5
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 7.5e-08 61.6 68 48.5
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 7.5e-08 61.6 68 51.5
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 9.8e-08 61.2 68 51.5
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 9.8e-08 61.2 68 50.0
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 1.3e-07 60.8 68 45.6
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.3e-07 60.8 59 57.6
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 1.3e-07 60.8 68 50.0
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 1.7e-07 60.5 68 50.0
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.7e-07 60.5 189 29.6
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 1.7e-07 60.5 68 47.1
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 1.7e-07 60.5 68 50.0
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 1.7e-07 60.5 68 45.6
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 1.7e-07 60.5 59 57.6
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 1.7e-07 60.5 60 51.7
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.2e-07 60.1 67 49.3
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.2e-07 60.1 67 49.3
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 2.2e-07 60.1 189 29.6
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 2.9e-07 59.7 68 51.5
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 2.9e-07 59.7 59 54.2
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 2.9e-07 59.7 178 30.3
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 2.9e-07 59.7 65 50.8
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 2.9e-07 59.7 68 51.5
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 3.7e-07 59.3 68 47.1
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 3.7e-07 59.3 59 57.6
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 3.7e-07 59.3 60 51.7
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 4.9e-07 58.9 68 44.1
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 4.9e-07 58.9 68 50.0
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 6.4e-07 58.5 68 48.5
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 6.4e-07 58.5 68 47.1
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 8.3e-07 58.2 68 50.0
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 1.9e-06 57.0 68 48.5
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 2.4e-06 56.6 68 47.1
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 4.1e-06 55.8 59 55.9
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 5.4e-06 55.5 68 50.0
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 5.4e-06 55.5 65 47.7
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 9.2e-06 54.7 68 45.6


User provided reference genes

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