Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 0.0e+00 1538.1 767 100.0
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 9.5e-280 966.8 767 67.3
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 7.1e-267 924.1 732 66.8
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 9.6e-264 913.7 755 66.5
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 1.9e-219 766.5 770 54.9
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 3.6e-218 762.3 774 55.3
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 4.8e-215 751.9 767 55.0
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 8.5e-212 741.1 772 54.1
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 1.9e-211 740.0 777 53.3
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 1.3e-204 717.2 773 53.4
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 5.0e-204 715.3 775 51.2
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 8.5e-204 714.5 765 52.0
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 8.5e-204 714.5 755 53.1
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 1.9e-203 713.4 759 52.8
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 2.7e-202 709.5 758 53.0
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 1.7e-199 700.3 765 52.2
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 2.2e-199 699.9 778 51.0
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 4.1e-198 695.7 765 51.8
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 1.3e-191 674.1 757 49.9
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 1.1e-190 671.0 772 49.5
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 5.9e-189 665.2 762 49.9
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 2.9e-188 662.9 678 53.5
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 5.0e-188 662.1 839 48.0
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 2.6e-184 649.8 765 48.6
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 7.5e-184 648.3 767 49.2
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 4.9e-183 645.6 767 48.8
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 6.4e-183 645.2 757 49.0
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 8.3e-183 644.8 773 49.4
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 2.0e-181 640.2 772 46.5
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 2.0e-181 640.2 755 48.9
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 2.7e-181 639.8 776 48.6
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 1.7e-180 637.1 759 49.3
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 2.3e-180 636.7 752 49.6
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 8.6e-180 634.8 769 45.8
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 8.6e-180 634.8 776 48.3
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.2e-178 630.9 776 48.6
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 1.6e-178 630.6 773 48.8
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 8.0e-178 628.2 774 46.8
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 1.2e-176 624.4 774 46.6
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 2.0e-176 623.6 773 46.7
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 1.3e-175 620.9 781 46.2
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 1.9e-174 617.1 770 46.0
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 3.5e-173 612.8 787 45.1
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 6.0e-173 612.1 787 45.0
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 1.0e-172 611.3 771 46.6
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 5.6e-171 605.5 752 46.5
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 9.5e-171 604.7 767 46.8
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 9.5e-171 604.7 844 43.8
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 1.2e-170 604.4 772 46.0
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 1.2e-170 604.4 812 45.2
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 1.6e-170 604.0 765 45.5
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 6.2e-170 602.1 809 45.0
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 6.8e-169 598.6 760 45.5
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 6.8e-169 598.6 732 46.7
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 8.9e-169 598.2 669 51.9
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 4.4e-168 595.9 750 45.2
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 9.8e-168 594.7 768 45.2
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 2.2e-167 593.6 764 45.7
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 2.2e-167 593.6 755 46.9
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 3.7e-167 592.8 727 46.2
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 1.9e-166 590.5 772 43.5
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 3.2e-166 589.7 775 46.8
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 7.8e-165 585.1 776 44.1
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 1.3e-164 584.3 761 44.3
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 1.7e-164 583.9 729 45.7
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 5.1e-164 582.4 729 45.7
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 6.6e-164 582.0 790 43.8
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 8.6e-164 581.6 741 46.0
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 3.3e-163 579.7 667 48.3
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 5.6e-163 578.9 764 43.8
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 8.1e-162 575.1 715 47.0
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 2.3e-161 573.5 705 47.1
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 4.0e-161 572.8 764 44.4
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 8.9e-161 571.6 768 45.2
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 2.6e-160 570.1 778 42.9
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 4.2e-150 536.2 707 45.3
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 2.0e-144 517.3 753 42.0
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 1.6e-141 507.7 760 39.9
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 2.6e-136 490.3 739 39.0
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 2.9e-135 486.9 509 53.0
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 1.0e-132 478.4 644 46.1
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 3.3e-131 473.4 645 44.0
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 1.5e-128 464.5 754 39.0
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 4.5e-128 463.0 640 45.0
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 7.6e-128 462.2 607 45.1
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 3.9e-116 423.3 586 43.2
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 8.2e-114 415.6 388 59.0
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 6.5e-111 406.0 521 46.4
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 3.2e-110 403.7 399 54.6
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 5.5e-110 402.9 513 46.4
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 1.1e-107 395.2 607 40.7
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 2.2e-106 391.0 765 34.9
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.5e-102 377.5 386 54.1
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 4.7e-101 373.2 477 44.4
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 1.4e-100 371.7 315 62.2
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 7.4e-99 365.9 606 40.1
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 9.1e-97 359.0 377 52.5
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 4.4e-91 340.1 397 50.9
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 5.9e-80 303.1 401 43.4
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 4.7e-77 293.5 559 37.4
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 6.1e-77 293.1 307 51.5
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 2.6e-75 287.7 703 30.0
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 9.8e-75 285.8 262 57.3
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 1.2e-69 268.9 787 28.1
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 8.9e-68 262.7 268 54.1
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 2.0e-67 261.5 346 43.4
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 8.0e-61 239.6 301 48.2
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 1.5e-59 235.3 851 25.1
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 4.9e-58 230.3 710 24.9
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 9.5e-54 216.1 299 41.5
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 2.6e-51 208.0 289 44.6
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 4.9e-50 203.8 163 59.5
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 1.3e-42 179.1 125 68.0
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 4.3e-38 164.1 125 64.0
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 6.2e-37 160.2 891 21.7
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 3.8e-34 151.0 108 63.0
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 2.7e-32 144.8 126 56.3
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 1.0e-31 142.9 271 36.9
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 6.6e-31 140.2 745 24.3
Rhsim03G0224400 Rhododendron simsii HOM05D005820 ORTHO05D007116 7.6e-27 126.7 109 67.0
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.7e-26 125.6 102 61.8
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 2.9e-26 124.8 98 65.3
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 2.1e-24 118.6 226 35.4
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 7.9e-24 116.7 166 46.4
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 5.1e-15 87.4 299 27.4
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 2.4e-12 78.6 62 69.4
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 3.1e-12 78.2 171 33.3
Actinidia27038 Actinidia chinensis HOM05D002899 ORTHO05D003850 4.0e-12 77.8 147 36.7
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 4.2e-09 67.8 190 30.5
arahy.Tifrunner.gnm1.ann1.DVH85A Arachis hypogaea HOM05D005820 ORTHO05D007116 1.8e-07 62.4 60 55.0


User provided reference genes

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