Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 4.1e-190 667.9 343 100.0
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 1.1e-153 547.0 325 87.1
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 4.4e-136 488.4 342 75.1
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 1.3e-135 486.9 323 77.7
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 1.0e-132 477.2 327 74.3
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 5.6e-131 471.5 323 76.2
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 3.4e-128 462.2 322 74.8
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 5.8e-128 461.5 328 73.2
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 3.8e-127 458.8 324 73.1
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 1.1e-126 457.2 326 74.5
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 2.4e-126 456.1 290 78.6
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 4.2e-126 455.3 328 72.0
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 9.3e-126 454.1 327 73.1
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 9.3e-126 454.1 331 70.7
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 2.7e-125 452.6 338 70.1
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 2.7e-125 452.6 335 72.2
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 3.5e-125 452.2 328 70.7
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 4.6e-125 451.8 321 72.9
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 6.0e-125 451.4 322 72.7
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 7.9e-125 451.1 324 72.2
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 1.0e-124 450.7 308 75.6
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 1.8e-124 449.9 321 72.9
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 1.8e-124 449.9 337 69.4
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 5.1e-124 448.4 301 76.1
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 8.7e-124 447.6 324 72.2
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 1.5e-123 446.8 297 78.5
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 1.9e-123 446.4 316 73.7
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 1.9e-123 446.4 311 73.6
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 3.3e-123 445.7 287 79.1
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 5.6e-123 444.9 324 71.3
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 9.6e-123 444.1 333 69.7
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 9.6e-123 444.1 335 68.7
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 1.3e-122 443.7 287 77.0
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 1.3e-122 443.7 326 71.8
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 2.1e-122 443.0 293 76.1
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 2.8e-122 442.6 293 77.1
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 2.8e-122 442.6 293 77.1
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 3.7e-122 442.2 327 69.7
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 4.8e-122 441.8 322 69.3
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 4.8e-122 441.8 323 73.1
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.1e-121 440.7 334 69.8
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 1.1e-121 440.7 302 73.5
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 1.8e-121 439.9 291 75.3
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 1.8e-121 439.9 317 71.0
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 1.8e-121 439.9 337 69.7
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 2.4e-121 439.5 314 70.1
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 3.1e-121 439.1 290 76.2
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 5.3e-121 438.3 288 76.4
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 5.3e-121 438.3 293 74.4
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 5.3e-121 438.3 336 69.6
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 6.9e-121 438.0 316 72.5
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 9.0e-121 437.6 293 74.1
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 1.2e-120 437.2 326 70.2
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 1.5e-120 436.8 267 80.5
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.0e-120 436.4 294 75.5
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 2.0e-120 436.4 295 74.2
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 2.0e-120 436.4 303 74.6
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 4.5e-120 435.3 281 76.2
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 4.5e-120 435.3 320 69.7
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 5.8e-120 434.9 311 71.1
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 7.6e-120 434.5 295 74.6
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 9.9e-120 434.1 295 75.3
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 9.9e-120 434.1 295 75.3
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 9.9e-120 434.1 294 73.8
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 1.7e-119 433.3 296 75.0
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 2.2e-119 433.0 296 75.0
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 2.9e-119 432.6 288 74.7
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 2.9e-119 432.6 295 74.9
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 2.9e-119 432.6 282 78.0
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 4.9e-119 431.8 295 74.9
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 4.9e-119 431.8 295 74.9
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 6.4e-119 431.4 295 74.9
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 6.4e-119 431.4 309 72.5
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 8.4e-119 431.0 295 74.6
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 1.9e-118 429.9 293 75.4
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 1.9e-118 429.9 296 74.3
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 2.5e-118 429.5 295 72.9
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 3.2e-118 429.1 296 74.7
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 3.2e-118 429.1 296 74.3
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 1.2e-117 427.2 321 70.4
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 1.2e-117 427.2 304 71.4
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 2.1e-117 426.4 267 79.4
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 3.5e-117 425.6 303 70.6
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 2.3e-116 422.9 264 77.7
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 5.1e-116 421.8 268 76.9
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 8.7e-116 421.0 265 77.0
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.2e-109 400.6 251 80.5
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 6.0e-109 398.3 306 65.0
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 3.9e-108 395.6 269 72.1
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 6.7e-108 394.8 265 74.0
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 8.7e-108 394.4 294 69.7
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 2.5e-107 392.9 265 74.0
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 6.3e-106 388.3 316 64.2
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 8.8e-100 367.9 260 75.4
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 2.5e-99 366.3 211 88.6
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.5e-96 357.1 240 74.2
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 1.7e-95 353.6 321 61.7
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 5.5e-94 348.6 224 78.1
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 7.2e-94 348.2 232 75.0
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 7.9e-93 344.7 226 77.0
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 2.6e-91 339.7 268 61.6
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 1.1e-89 334.3 279 60.2
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 3.1e-89 332.8 244 73.4
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 1.9e-86 323.6 246 70.7
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.3e-84 316.6 246 67.5
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 2.0e-83 313.5 218 71.6
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 6.3e-82 308.5 218 72.0
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 4.1e-81 305.8 212 72.6
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 3.8e-79 299.3 216 70.4
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 3.7e-74 282.7 310 53.5
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 1.8e-73 280.4 271 52.0
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 2.4e-65 253.4 148 83.1
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 6.6e-63 245.4 209 61.7
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 1.5e-54 217.6 205 57.6
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.4e-52 211.1 159 69.8
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 1.6e-48 197.6 270 42.6
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 3.9e-47 193.0 120 78.3
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 5.6e-46 189.1 121 76.9
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 7.3e-46 188.7 345 38.0
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 6.8e-44 182.2 116 78.4
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 8.9e-44 181.8 113 78.8
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 2.9e-42 176.8 128 70.3
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 1.4e-41 174.5 241 44.4
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 4.6e-32 142.9 349 32.7
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 4.0e-28 129.8 78 85.9
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 5.2e-28 129.4 75 85.3
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 2.6e-27 127.1 273 31.5
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 6.4e-26 122.5 76 77.6
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 5.4e-25 119.4 78 76.9
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 1.6e-21 107.8 271 28.8
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 1.6e-21 107.8 71 73.2
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 1.4e-20 104.8 125 52.0
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 5.8e-19 99.4 129 45.0
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 6.9e-12 75.9 72 59.7
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 6.9e-12 75.9 72 59.7
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 2.1e-08 64.3 39 76.9
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 4.3e-06 56.6 59 54.2


User provided reference genes

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