Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 9.2e-292 1006.1 496 100.0
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 6.4e-261 903.7 494 88.7
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 8.4e-253 876.7 494 87.0
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 1.1e-252 876.3 493 86.8
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 3.2e-252 874.8 488 87.5
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 9.3e-252 873.2 493 85.8
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 3.5e-251 871.3 488 86.5
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 4.6e-251 870.9 493 86.0
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 6.6e-250 867.1 489 85.7
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.9e-249 865.5 493 85.2
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 4.3e-249 864.4 493 85.8
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 5.6e-249 864.0 493 85.2
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 9.6e-249 863.2 493 83.8
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.6e-248 862.4 496 85.1
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 3.6e-248 861.3 493 84.8
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 8.1e-248 860.1 493 85.6
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 1.1e-247 859.8 488 85.9
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 1.4e-247 859.4 493 85.2
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 2.4e-247 858.6 494 85.0
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 4.0e-247 857.8 493 85.0
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 5.3e-247 857.4 493 85.0
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 6.9e-247 857.1 489 85.1
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 6.9e-247 857.1 494 85.2
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.9e-247 857.1 493 85.0
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 6.9e-247 857.1 488 85.2
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 9.0e-247 856.7 493 85.0
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.2e-246 856.3 493 84.6
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 2.0e-246 855.5 493 85.6
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 4.5e-246 854.4 493 85.2
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 5.8e-246 854.0 493 84.6
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 9.9e-246 853.2 488 84.8
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 9.9e-246 853.2 488 84.8
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 9.9e-246 853.2 494 84.4
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 1.7e-245 852.4 493 85.2
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.8e-245 851.3 493 84.2
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 3.8e-245 851.3 493 83.4
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 4.9e-245 850.9 504 83.7
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 6.4e-245 850.5 488 84.2
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 8.4e-245 850.1 494 84.4
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 1.1e-244 849.7 493 83.6
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.4e-244 849.4 498 83.9
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.9e-244 849.0 488 84.2
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 5.5e-244 847.4 488 84.2
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.2e-243 846.3 493 83.6
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 2.1e-243 845.5 490 84.3
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 1.8e-242 842.4 493 84.0
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 1.8e-242 842.4 487 85.6
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 1.8e-242 842.4 527 79.5
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 2.3e-242 842.0 489 84.3
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 3.9e-242 841.3 496 83.1
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 8.7e-242 840.1 493 83.6
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 1.5e-241 839.3 487 85.2
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 1.9e-241 839.0 493 83.0
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 1.9e-241 839.0 493 82.6
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.9e-241 839.0 531 79.3
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 2.5e-241 838.6 494 82.8
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 3.3e-241 838.2 493 84.0
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 7.4e-241 837.0 508 81.7
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 2.8e-240 835.1 493 83.0
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 2.8e-240 835.1 493 82.8
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 1.4e-239 832.8 494 83.0
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 1.4e-239 832.8 493 83.0
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 2.4e-239 832.0 487 84.4
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 2.4e-239 832.0 486 85.2
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 5.3e-239 830.9 494 82.4
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 5.3e-239 830.9 496 82.1
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 6.9e-239 830.5 494 81.8
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 2.0e-238 828.9 493 82.6
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 7.6e-238 827.0 490 82.4
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 7.6e-238 827.0 490 82.4
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 7.6e-238 827.0 495 82.2
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 3.8e-237 824.7 492 82.1
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 4.9e-237 824.3 489 81.4
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 4.9e-237 824.3 493 81.9
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 8.4e-237 823.5 489 81.6
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 8.4e-237 823.5 489 81.6
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.1e-236 823.2 491 82.5
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 1.9e-236 822.4 493 81.1
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 4.2e-236 821.2 491 81.9
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 4.2e-236 821.2 493 81.5
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 9.3e-236 820.1 489 82.2
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 9.3e-236 820.1 493 82.4
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 1.2e-235 819.7 499 81.0
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.6e-235 819.3 490 81.2
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 1.6e-235 819.3 489 81.6
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 2.7e-235 818.5 489 81.0
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 4.6e-235 817.8 489 82.0
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 4.6e-235 817.8 489 81.2
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.0e-234 816.6 493 80.5
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 1.3e-234 816.2 494 80.4
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 1.3e-234 816.2 497 80.3
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.8e-234 815.8 480 82.7
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 2.3e-234 815.5 492 80.9
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 3.0e-234 815.1 489 81.0
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 6.7e-234 813.9 493 81.1
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 8.7e-234 813.5 477 82.8
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 1.3e-232 809.7 496 80.2
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 2.8e-232 808.5 489 80.8
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.8e-229 798.1 486 80.2
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 2.5e-228 795.4 488 80.7
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 3.8e-221 771.5 441 85.9
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 5.0e-221 771.2 436 86.0
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 8.5e-221 770.4 488 78.3
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.4e-220 769.6 488 78.1
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 2.3e-218 762.3 437 83.5
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 2.0e-217 759.2 516 74.2
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 3.4e-214 748.4 493 75.7
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 9.4e-212 740.3 441 82.1
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 1.4e-210 736.5 442 81.2
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 6.3e-208 727.6 442 81.7
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 1.1e-204 716.8 489 72.2
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 4.2e-204 714.9 442 79.4
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 5.2e-202 708.0 383 90.6
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 5.3e-199 698.0 485 72.4
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 7.2e-196 687.6 381 88.2
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 7.2e-196 687.6 461 79.0
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 2.1e-195 686.0 486 68.3
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.8e-191 672.9 487 71.9
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 1.0e-186 657.1 494 69.0
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.5e-185 653.3 481 71.1
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 1.5e-185 653.3 405 77.8
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.6e-181 637.9 383 82.5
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.7e-176 623.2 492 67.5
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 6.4e-176 621.3 509 62.5
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 1.5e-172 610.1 387 79.6
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 2.5e-164 582.8 382 75.9
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 9.5e-164 580.9 345 82.0
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 9.6e-148 527.7 528 51.3
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.4e-138 497.3 266 91.0
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 5.3e-122 442.2 460 52.4
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 7.1e-119 431.8 245 85.7
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 4.5e-113 412.5 241 82.6
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.2e-111 406.0 228 87.7
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 2.4e-106 390.2 251 74.9
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 2.4e-106 390.2 301 67.1
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.1e-106 389.4 477 49.1
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 5.3e-106 389.0 238 77.3
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 4.2e-103 379.4 431 50.6
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 2.8e-99 366.7 303 67.3
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.0e-92 344.0 310 60.6
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 4.4e-92 342.8 237 71.3
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 1.2e-89 334.7 237 70.0
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 7.7e-81 305.4 249 67.1
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 3.4e-60 236.9 260 53.1
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 3.5e-57 226.9 158 72.2
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 5.2e-53 213.0 147 69.4
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 9.2e-50 202.2 299 44.5
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 6.6e-48 196.1 103 90.3
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.6e-46 190.3 151 68.9
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 4.7e-46 189.9 98 90.8
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 4.4e-44 183.3 100 88.0
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.3e-43 181.8 146 61.0
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 1.6e-38 164.9 109 72.5
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 1.8e-37 161.4 149 57.7
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 2.5e-31 141.0 159 49.7
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 4.3e-31 140.2 75 88.0
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 9.9e-28 129.0 79 77.2
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 6.4e-27 126.3 85 71.8
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 2.2e-19 101.3 93 59.1
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 5.4e-18 96.7 73 65.8
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 2.1e-14 84.7 61 73.8
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 2.9e-11 74.3 51 72.5
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 8.4e-11 72.8 36 88.9
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 1.2e-09 68.9 51 66.7
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 3.9e-08 63.9 30 90.0
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 6.2e-06 56.6 38 73.7


User provided reference genes

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