Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 5.5e-175 617.5 297 100.0
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 5.7e-164 580.9 290 96.2
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 4.4e-156 554.7 289 90.3
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 9.7e-156 553.5 290 91.0
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 2.4e-154 548.9 295 89.8
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 4.1e-154 548.1 294 88.1
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 9.1e-154 547.0 290 89.7
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 3.5e-153 545.0 288 90.3
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 3.5e-153 545.0 288 90.3
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 4.5e-153 544.7 293 90.1
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 4.5e-153 544.7 295 88.8
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 4.5e-153 544.7 288 89.9
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 5.9e-153 544.3 290 89.3
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 5.9e-153 544.3 294 88.4
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 7.7e-153 543.9 292 88.7
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.3e-152 543.1 284 91.2
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.3e-152 543.1 284 91.2
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 2.2e-152 542.3 293 88.1
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 2.9e-152 542.0 294 87.8
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 3.8e-152 541.6 290 88.6
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 6.5e-152 540.8 299 87.0
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 6.5e-152 540.8 295 88.5
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 1.1e-151 540.0 292 88.0
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.5e-151 539.7 295 87.8
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.9e-151 539.3 295 86.4
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 2.5e-151 538.9 275 92.0
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 2.5e-151 538.9 290 87.6
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 4.2e-151 538.1 299 86.6
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 4.2e-151 538.1 304 85.9
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 4.2e-151 538.1 290 87.2
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 4.2e-151 538.1 290 87.2
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 4.2e-151 538.1 288 88.9
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 9.4e-151 537.0 290 88.3
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 1.6e-150 536.2 301 84.7
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.1e-150 535.8 290 87.9
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 2.7e-150 535.4 290 87.2
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 3.6e-150 535.0 290 88.3
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 4.7e-150 534.6 294 86.7
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 6.1e-150 534.3 290 87.6
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 8.0e-150 533.9 298 85.2
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.4e-149 533.1 292 87.3
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.8e-149 532.7 292 87.0
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 2.3e-149 532.3 290 86.9
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 5.2e-149 531.2 290 87.6
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 5.2e-149 531.2 297 86.5
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 6.8e-149 530.8 290 86.6
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 6.8e-149 530.8 289 87.9
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 8.8e-149 530.4 293 85.0
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 1.2e-148 530.0 273 91.2
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 1.2e-148 530.0 298 86.6
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 1.5e-148 529.6 298 86.2
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 1.5e-148 529.6 297 86.2
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.5e-148 529.6 290 86.2
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 1.5e-148 529.6 298 85.9
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.0e-148 529.3 290 86.2
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 2.0e-148 529.3 279 88.9
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 2.0e-148 529.3 290 88.3
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.6e-148 528.9 290 86.9
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 3.4e-148 528.5 290 85.9
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 4.4e-148 528.1 291 85.2
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 4.4e-148 528.1 273 91.6
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 7.5e-148 527.3 290 86.9
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 7.5e-148 527.3 290 85.9
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 7.5e-148 527.3 290 87.2
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 1.7e-147 526.2 290 85.9
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 2.2e-147 525.8 288 86.1
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.2e-147 525.8 292 86.6
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 3.7e-147 525.0 289 86.9
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 3.7e-147 525.0 291 85.9
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 3.7e-147 525.0 273 90.8
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 6.3e-147 524.2 289 88.2
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 8.3e-147 523.9 288 86.1
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 1.1e-146 523.5 291 87.3
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 1.4e-146 523.1 294 85.7
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.4e-146 523.1 293 85.3
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 1.8e-146 522.7 296 84.1
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 1.8e-146 522.7 291 84.9
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 3.1e-146 521.9 294 85.4
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 3.1e-146 521.9 294 85.4
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 3.1e-146 521.9 294 85.4
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 4.1e-146 521.5 291 84.5
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 4.1e-146 521.5 296 83.8
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 4.1e-146 521.5 296 82.8
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 5.4e-146 521.2 290 84.8
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 5.4e-146 521.2 290 85.2
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 1.6e-145 519.6 294 85.0
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 1.6e-145 519.6 294 85.0
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.6e-145 519.6 288 85.8
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 2.7e-145 518.8 269 89.6
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 2.7e-145 518.8 291 85.2
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 3.5e-145 518.5 291 85.9
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 4.5e-145 518.1 289 85.1
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 5.9e-145 517.7 290 85.2
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 5.9e-145 517.7 292 85.3
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 7.7e-145 517.3 286 85.3
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 1.0e-144 516.9 294 83.7
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 1.3e-144 516.5 301 83.1
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 1.7e-144 516.2 292 85.3
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 2.9e-144 515.4 293 83.3
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.5e-143 513.1 315 78.7
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 1.5e-143 513.1 297 81.8
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.9e-143 512.7 292 84.9
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 2.1e-142 509.2 299 81.9
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 4.7e-142 508.1 291 81.8
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 4.7e-142 508.1 289 82.4
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.8e-141 506.1 298 79.2
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.8e-141 506.1 298 79.2
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.5e-140 503.1 268 86.9
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 2.4e-138 495.7 285 81.1
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 5.4e-138 494.6 347 70.6
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 2.9e-136 488.8 290 80.0
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 2.9e-136 488.8 290 80.0
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 5.4e-130 468.0 290 75.9
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.9e-127 459.5 274 76.6
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 1.2e-126 456.8 291 75.3
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.6e-126 456.4 274 75.9
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 2.1e-126 456.1 289 73.0
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 6.8e-125 451.1 274 75.5
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 4.4e-124 448.4 270 78.1
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.9e-122 443.0 289 71.3
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 5.2e-117 424.9 262 72.5
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 4.6e-113 411.8 287 68.3
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 1.1e-111 407.1 294 65.0
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 6.4e-107 391.3 242 79.8
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.3e-99 367.1 296 66.6
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.4e-98 363.6 195 87.2
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 4.2e-98 362.1 294 66.0
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 9.3e-98 360.9 266 62.4
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 3.5e-97 359.0 276 64.1
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 4.6e-97 358.6 194 87.1
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 6.4e-91 338.2 257 61.5
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 8.7e-88 327.8 292 61.0
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 9.0e-85 317.8 291 58.8
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 1.9e-79 300.1 264 56.1
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 3.4e-76 289.3 148 93.2
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.6e-73 280.4 195 71.8
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 3.6e-65 252.7 134 90.3
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 5.1e-56 222.2 115 91.3
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 7.4e-55 218.4 114 90.4
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.4e-50 204.1 114 86.0
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 4.2e-50 202.6 114 86.0
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 3.7e-46 189.5 120 74.2
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 2.6e-44 183.3 217 45.2
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 1.3e-43 181.0 254 42.5
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 1.4e-37 161.0 199 44.2
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 8.3e-30 135.2 93 67.7
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 2.6e-23 113.6 57 89.5
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 1.7e-19 100.9 76 63.2
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 5.0e-11 72.8 48 64.6
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 6.8e-08 62.4 35 77.1


User provided reference genes

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