Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 2.0e-258 895.2 444 100.0
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 1.8e-214 749.2 445 83.6
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 5.6e-200 701.0 456 77.6
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 3.1e-198 695.3 451 77.4
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 2.0e-197 692.6 456 77.2
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 1.3e-196 689.9 452 76.3
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 2.5e-195 685.6 456 75.4
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 2.5e-195 685.6 448 76.8
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 3.2e-195 685.3 445 77.5
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 7.1e-195 684.1 431 78.9
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 1.2e-194 683.3 453 75.3
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 3.5e-194 681.8 443 76.7
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 4.6e-194 681.4 452 75.7
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.0e-193 680.2 443 76.1
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 1.5e-192 676.4 439 77.7
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 1.9e-192 676.0 426 78.4
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 2.5e-192 675.6 436 76.6
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 3.7e-191 671.8 432 77.1
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 8.2e-191 670.6 447 74.3
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 1.8e-190 669.5 433 76.2
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 1.8e-190 669.5 436 76.8
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 2.4e-190 669.1 440 75.9
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 5.3e-190 667.9 437 75.5
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 5.3e-190 667.9 438 74.9
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 6.9e-190 667.5 441 75.3
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 9.0e-190 667.2 426 76.8
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 1.2e-189 666.8 432 76.6
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.5e-189 666.4 427 77.5
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 3.4e-189 665.2 427 77.8
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 3.4e-189 665.2 454 73.6
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 5.9e-189 664.5 453 74.2
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 1.0e-188 663.7 435 76.1
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 1.0e-188 663.7 426 76.8
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 1.3e-188 663.3 447 74.7
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 1.3e-188 663.3 436 76.4
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 1.7e-188 662.9 426 76.3
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.8e-188 661.8 433 76.0
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 3.8e-188 661.8 426 76.3
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 8.5e-188 660.6 447 72.7
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.4e-187 659.8 433 76.2
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 3.2e-187 658.7 433 76.2
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 3.2e-187 658.7 435 74.9
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.2e-186 656.8 433 75.3
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.6e-186 656.4 433 76.2
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 1.6e-186 656.4 427 76.3
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 3.6e-186 655.2 450 73.6
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 6.1e-186 654.4 424 73.6
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 6.1e-186 654.4 447 73.4
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 1.4e-185 653.3 422 76.8
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 3.9e-185 651.7 454 71.6
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 5.1e-185 651.4 435 74.9
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 6.7e-185 651.0 421 76.0
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 2.0e-184 649.4 432 74.8
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 2.0e-184 649.4 428 74.8
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 3.3e-184 648.7 425 75.8
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 3.3e-184 648.7 439 74.0
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 7.4e-184 647.5 452 72.1
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 2.2e-183 646.0 452 72.3
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 3.7e-183 645.2 423 75.9
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 6.3e-183 644.4 439 74.0
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 8.2e-183 644.0 428 74.3
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 1.4e-182 643.3 423 75.4
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 1.4e-182 643.3 423 75.4
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 2.4e-182 642.5 424 75.2
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 4.1e-182 641.7 425 74.1
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 4.1e-182 641.7 447 72.0
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 6.9e-182 641.0 426 75.1
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 6.9e-182 641.0 426 75.1
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 1.2e-181 640.2 432 73.6
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.5e-181 639.8 454 70.0
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.5e-181 638.3 435 70.6
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 4.5e-181 638.3 430 71.6
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 5.9e-181 637.9 428 73.6
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 7.7e-181 637.5 433 70.7
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 1.3e-180 636.7 426 72.5
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 2.9e-180 635.6 448 71.9
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 2.9e-180 635.6 443 71.3
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 2.9e-180 635.6 448 69.9
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 2.9e-180 635.6 420 74.3
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 3.8e-180 635.2 428 74.8
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 5.0e-180 634.8 435 73.6
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 8.5e-180 634.0 424 74.3
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 1.1e-179 633.6 435 73.3
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 1.4e-179 633.3 441 71.9
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 5.5e-179 631.3 445 71.2
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 3.6e-178 628.6 433 72.5
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 7.9e-178 627.5 441 71.4
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 1.0e-177 627.1 444 69.6
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 4.4e-176 621.7 422 72.5
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 4.4e-176 621.7 436 71.1
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 9.7e-176 620.5 449 69.9
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 2.4e-174 615.9 420 73.3
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 2.4e-174 615.9 426 70.0
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 3.1e-174 615.5 454 67.2
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 5.3e-174 614.8 421 72.2
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 1.5e-173 613.2 426 71.1
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 1.5e-173 613.2 437 70.9
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 2.5e-171 605.9 420 72.9
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 8.0e-170 600.9 417 73.1
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 9.7e-168 594.0 415 69.2
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 8.2e-167 590.9 420 71.7
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 1.1e-166 590.5 423 68.1
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.4e-166 589.3 396 74.2
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 7.7e-165 584.3 404 74.3
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 3.8e-164 582.0 407 69.8
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 2.5e-163 579.3 417 69.3
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 4.2e-163 578.6 447 65.8
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 1.4e-161 573.5 378 75.1
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 2.3e-161 572.8 456 66.9
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 8.8e-161 570.9 376 76.6
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 1.6e-157 560.1 378 74.3
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 2.0e-157 559.7 425 64.9
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 7.2e-155 551.2 439 61.7
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 1.2e-154 550.4 425 66.4
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 2.7e-154 549.3 418 65.8
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 6.8e-153 544.7 419 64.0
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 6.8e-153 544.7 370 73.5
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 7.5e-152 541.2 423 62.9
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 4.1e-150 535.4 423 66.2
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 3.5e-149 532.3 422 64.5
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 5.9e-149 531.6 422 61.8
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 3.8e-148 528.9 417 63.5
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 2.5e-147 526.2 439 62.2
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 3.6e-146 522.3 412 62.6
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 1.8e-145 520.0 421 60.8
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 2.3e-145 519.6 441 59.9
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 2.3e-145 519.6 435 63.4
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 2.1e-138 496.5 332 74.7
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 3.6e-138 495.7 426 60.8
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 2.6e-136 489.6 370 66.5
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 7.5e-136 488.0 433 60.3
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 6.0e-133 478.4 439 56.3
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 3.3e-131 472.6 428 58.6
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 6.8e-129 464.9 445 54.6
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 1.2e-128 464.2 445 54.6
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.2e-128 464.2 450 57.3
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 1.3e-127 460.7 443 55.1
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 1.9e-123 446.8 406 54.7
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 7.3e-123 444.9 412 55.8
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 3.6e-122 442.6 340 65.6
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 2.9e-119 433.0 432 54.2
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 6.6e-116 421.8 328 66.5
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 4.4e-112 409.1 373 58.2
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 5.8e-112 408.7 389 60.2
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 2.4e-110 403.3 418 51.9
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 7.3e-107 391.7 374 54.5
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 2.4e-105 386.7 273 67.8
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 2.6e-104 383.3 433 49.2
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 8.7e-100 368.2 373 53.6
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 1.9e-99 367.1 225 74.7
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 3.5e-93 346.3 379 54.4
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 1.5e-83 314.3 175 84.6
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.8e-82 309.3 297 54.9
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 6.9e-81 305.4 249 65.1
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 1.1e-75 288.1 241 63.1
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.2e-62 243.0 203 56.7
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.2e-62 243.0 203 56.7
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.4e-60 238.0 196 57.7
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.4e-60 238.0 196 57.7
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.4e-60 238.0 196 57.7
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 7.2e-54 215.7 116 86.2
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 1.8e-52 211.1 113 85.8
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 6.7e-52 209.1 204 54.9
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 6.7e-52 209.1 204 54.9
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 6.7e-52 209.1 204 54.9
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 1.2e-37 161.8 89 84.3
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.4e-36 158.3 89 82.0
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 4.0e-36 156.8 105 72.4
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 1.2e-35 155.2 96 77.1
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 5.7e-35 152.9 108 71.3
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 4.9e-34 149.8 121 62.0
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 1.2e-32 145.2 162 52.5
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 5.6e-30 136.3 76 80.3
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.1e-25 122.1 148 48.6
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.0e-24 117.9 70 78.6
ATR0763G191 Amborella trichopoda HOM05D003673 ORTHO05D017143 1.0e-23 115.5 114 52.6
Dinv21956 Davidia involucrata HOM05D003673 ORTHO05D004764 1.0e-23 115.5 98 65.3
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 1.3e-23 115.2 65 78.5
CARHR006190 Cardamine hirsuta HOM05D003673 ORTHO05D004764 4.7e-21 106.7 54 88.9
AUR62039302 Chenopodium quinoa HOM05D003673 ORTHO05D017143 6.2e-21 106.3 137 49.6
TPR.G10161 Trifolium pratense HOM05D003673 ORTHO05D004764 8.0e-21 105.9 57 84.2
FAN21G3810 Fragaria x ananassa HOM05D003673 ORTHO05D025527 8.6e-15 85.9 138 42.0
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 4.3e-14 83.6 343 26.5
FAN10G3644 Fragaria x ananassa HOM05D003673 ORTHO05D025527 9.5e-14 82.4 138 39.9
FAN18G2996 Fragaria x ananassa HOM05D003673 ORTHO05D025527 9.5e-14 82.4 138 41.3
Lj8C8T3 Lonicera japonica HOM05D003673 ORTHO05D004764 3.6e-13 80.5 43 83.7
MD05G1024100 Malus domestica HOM05D003673 ORTHO05D017143 2.6e-11 74.3 39 79.5


User provided reference genes

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