Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04654 Vaccinium macrocarpon HOM05D001292 ORTHO05D001202 0.0e+00 1094.3 545 100.0
Rhsim07G0211800 Rhododendron simsii HOM05D001292 ORTHO05D001202 2.4e-136 490.0 529 53.7
Actinidia19631 Actinidia chinensis HOM05D001292 ORTHO05D001202 1.9e-104 384.0 532 44.4
Actinidia29624 Actinidia chinensis HOM05D001292 ORTHO05D001202 3.3e-101 373.2 532 43.4
CSS0010703 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 3.4e-82 310.1 538 38.3
Dinv44858 Davidia involucrata HOM05D001292 ORTHO05D001202 1.1e-64 251.9 303 48.5
Hma1.2p1_0125F.1_g058890 Hydrangea macrophylla HOM05D001292 ORTHO05D001202 1.5e-56 224.9 305 44.3
Hma1.2p1_0010F.1_g006660 Hydrangea macrophylla HOM05D001292 ORTHO05D001202 6.8e-54 216.1 304 44.1
Lj4A718G40 Lonicera japonica HOM05D001292 ORTHO05D001202 3.4e-53 213.8 304 44.1
Lj4A737G51 Lonicera japonica HOM05D001292 ORTHO05D001202 1.8e-51 208.0 304 43.8
TAR625G0946 Trochodendron aralioides HOM05D001292 ORTHO05D001202 6.3e-44 183.0 313 40.3
CiPaw.08G055500 Carya illinoinensis HOM05D001292 ORTHO05D001202 2.4e-43 181.0 302 39.7
Cfa013791 Carpinus fangiana HOM05D001292 ORTHO05D001202 4.1e-43 180.3 306 38.9
CiPaw.07G165900 Carya illinoinensis HOM05D001292 ORTHO05D001202 5.9e-42 176.4 309 39.5
Haze_22451 Corylus avellana HOM05D001292 ORTHO05D001202 8.6e-41 172.6 306 37.3
QL09p017743 Quercus lobata HOM05D001292 ORTHO05D001202 1.8e-38 164.9 294 38.1
MD08G1197400 Malus domestica HOM05D001292 ORTHO05D001202 2.6e-37 161.0 302 35.8
MD15G1385000 Malus domestica HOM05D001292 ORTHO05D001202 4.4e-37 160.2 302 36.4
Thecc.08G070600 Theobroma cacao HOM05D001292 ORTHO05D001202 3.7e-36 157.1 302 37.4
GSVIVG01009172001 Vitis vinifera HOM05D001292 ORTHO05D001202 5.4e-35 153.3 314 35.7
TAR381G0500 Trochodendron aralioides HOM05D001292 ORTHO05D001202 2.7e-34 151.0 272 37.1
COL.COLO4_35242 Corchorus olitorius HOM05D001292 ORTHO05D001202 1.7e-33 148.3 321 34.6
Nn1g05565 Nelumbo nucifera HOM05D001292 ORTHO05D001202 9.5e-32 142.5 337 30.6
TWI56G0043 Tripterygium wilfordii HOM05D001292 ORTHO05D001202 3.6e-31 140.6 297 34.3
Nn5g29887 Nelumbo nucifera HOM05D001292 ORTHO05D001202 3.4e-29 134.0 340 32.1
Sabra02G0083000 Salix brachista HOM05D001292 ORTHO05D001202 2.9e-28 131.0 300 34.0
Lsat_1_v5_gn_9_75061 Lactuca sativa HOM05D001292 ORTHO05D001202 1.3e-25 122.1 309 30.7
Gohir.D01G117200 Gossypium hirsutum HOM05D001292 ORTHO05D001202 1.7e-25 121.7 300 34.0
Gohir.A01G132400 Gossypium hirsutum HOM05D001292 ORTHO05D001202 3.9e-25 120.6 301 35.9
Gorai.002G142500 Gossypium raimondii HOM05D001292 ORTHO05D001202 6.6e-25 119.8 300 34.7
FAN13G3173 Fragaria x ananassa HOM05D001292 ORTHO05D001202 8.6e-25 119.4 364 29.1
Manes.02G145000 Manihot esculenta HOM05D001292 ORTHO05D001202 8.6e-25 119.4 298 31.2
Peaxi162Scf00495g00217 Petunia axillaris HOM05D026203 ORTHO05D030438 3.3e-24 117.5 306 30.7
HanXRQChr15g0484871 Helianthus annuus HOM05D001292 ORTHO05D001202 1.6e-23 115.2 289 31.5
Nitab4.5_0000159g0110 Nicotiana tabacum HOM05D001292 ORTHO05D001202 4.7e-23 113.6 299 31.4
FvH4_5g35390 Fragaria vesca HOM05D001292 ORTHO05D001202 8.1e-23 112.8 364 28.0
RcHm_v2.0_Chr7g0236781 Rosa chinensis HOM05D001292 ORTHO05D001202 1.4e-22 112.1 293 31.7
ClCG08G011690 Citrullus lanatus HOM05D001292 ORTHO05D001202 2.3e-22 111.3 297 31.6
FAN04G0518 Fragaria x ananassa HOM05D001292 ORTHO05D001202 2.3e-22 111.3 371 27.5
Eucgr.F02147 Eucalyptus grandis HOM05D001292 ORTHO05D001202 4.0e-22 110.5 290 30.3
FAN08G0616 Fragaria x ananassa HOM05D001292 ORTHO05D001202 4.0e-22 110.5 365 27.7
Gohir.A05G219700 Gossypium hirsutum HOM05D001292 ORTHO05D001202 4.0e-22 110.5 252 34.1
Gorai.009G229600 Gossypium raimondii HOM05D001292 ORTHO05D001202 4.0e-22 110.5 247 32.4
Potri.002G105700 Populus trichocarpa HOM05D001292 ORTHO05D001202 4.0e-22 110.5 296 31.8
FAN18G2083 Fragaria x ananassa HOM05D001292 ORTHO05D001202 1.5e-21 108.6 365 27.9
Gohir.D05G222200 Gossypium hirsutum HOM05D001292 ORTHO05D001202 1.5e-21 108.6 247 32.0
Sc01g0001150 Simmondsia chinensis HOM05D001292 ORTHO05D001202 2.0e-21 108.2 327 31.2
Potri.005G155600 Populus trichocarpa HOM05D001292 ORTHO05D001202 5.8e-21 106.7 288 31.6
Manes.10G098700 Manihot esculenta HOM05D001292 ORTHO05D001202 4.9e-20 103.6 311 28.6
DCAR_012858 Daucus carota HOM05D001292 ORTHO05D001202 6.4e-20 103.2 244 36.1
MELO3C011091.2 Cucumis melo HOM05D001292 ORTHO05D001202 1.4e-19 102.1 316 30.7
Aqoxy6G00877 Aquilegia oxysepala HOM05D001292 ORTHO05D001202 4.1e-19 100.5 309 28.8
Cpa.g.sc21.13 Carica papaya HOM05D001292 ORTHO05D001202 4.1e-19 100.5 301 30.6
CsaV3_2G030290 Cucumis sativus L. HOM05D001292 ORTHO05D001202 1.6e-18 98.6 304 30.3
Dinv15996 Davidia involucrata HOM05D001292 ORTHO05D001202 2.1e-18 98.2 310 31.6
TWI12G0821 Tripterygium wilfordii HOM05D001292 ORTHO05D001202 1.3e-17 95.5 296 28.7
HanXRQChr05g0163371 Helianthus annuus HOM05D001292 ORTHO05D001202 2.3e-17 94.7 199 31.7
Migut.N02858 Erythranthe guttata HOM05D001292 ORTHO05D001202 3.0e-17 94.4 302 30.8
ECA232G4048 Erigeron canadensis HOM05D001292 ORTHO05D001202 6.6e-17 93.2 301 30.9
Lsat_1_v5_gn_6_105041 Lactuca sativa HOM05D001292 ORTHO05D001202 1.5e-16 92.0 158 36.1
CAN.G61.18 Capsicum annuum HOM05D001292 ORTHO05D001202 2.5e-16 91.3 304 28.9
MBI16_g27584_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D001202 3.3e-16 90.9 310 27.4
Sed0011755 Sechium edule HOM05D001292 ORTHO05D001202 5.6e-16 90.1 301 29.2
Thhalv10006645m.g Eutrema salsugineum HOM05D001292 ORTHO05D001202 9.6e-16 89.4 335 26.0
Solyc11g017040.2 Solanum lycopersicum HOM05D001292 ORTHO05D001202 1.2e-15 89.0 296 27.7
C05p07810 Brassica napus HOM05D001292 ORTHO05D001202 1.6e-15 88.6 305 26.9
Ciclev10000201m.g Citrus clementina HOM05D001292 ORTHO05D001202 2.1e-15 88.2 308 30.2
Gohir.A03G177400 Gossypium hirsutum HOM05D001292 ORTHO05D001202 2.1e-15 88.2 302 26.8
MBI07_g34624_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D001202 3.6e-15 87.4 338 26.9
Nitab4.5_0000531g0050 Nicotiana tabacum HOM05D001292 ORTHO05D001202 3.6e-15 87.4 295 26.1
CANSAT25G2063 Cannabis sativa HOM05D001292 ORTHO05D001202 4.7e-15 87.0 139 34.5
PGR031G1992 Punica granatum HOM05D001292 ORTHO05D001202 6.2e-15 86.7 305 27.9
Hund16858 Selenicereus undatus HOM05D001292 ORTHO05D001202 8.1e-15 86.3 296 26.7
Sopen11g009030 Solanum pennellii HOM05D001292 ORTHO05D001202 1.1e-14 85.9 302 28.1
BolC5t29532H Brassica oleracea HOM05D001292 ORTHO05D001202 1.8e-14 85.1 305 26.9
ClCG09G016070 Citrullus lanatus HOM05D001292 ORTHO05D001202 1.8e-14 85.1 286 25.9
Duzib052G0393 Durio zibethinus HOM05D001292 ORTHO05D001202 5.2e-14 83.6 329 25.5
ECA246G3273 Erigeron canadensis HOM05D001292 ORTHO05D001202 5.2e-14 83.6 100 39.0
Aa31LG1G5260 Aethionema arabicum HOM05D001292 ORTHO05D001202 2.6e-13 81.3 314 25.5
Ah.05g170840 Amaranthus hybridus HOM05D001292 ORTHO05D001202 2.6e-13 81.3 306 27.5
BraA06t23852Z Brassica rapa HOM05D001292 ORTHO05D001202 2.6e-13 81.3 319 25.4
MELO3C018604.2 Cucumis melo HOM05D001292 ORTHO05D001202 2.6e-13 81.3 76 43.4
A06p06410 Brassica napus HOM05D001292 ORTHO05D001202 3.4e-13 80.9 319 27.3
Gorai.005G225700 Gossypium raimondii HOM05D001292 ORTHO05D001202 5.8e-13 80.1 310 26.1
BraA08t35351Z Brassica rapa HOM05D001292 ORTHO05D001202 7.6e-13 79.7 324 26.9
TPR.G6330 Trifolium pratense HOM05D001292 ORTHO05D001202 9.9e-13 79.3 307 26.4
Sed0002698 Sechium edule HOM05D001292 ORTHO05D001202 1.3e-12 79.0 134 33.6
Gohir.A04G115400 Gossypium hirsutum HOM05D001292 ORTHO05D001202 2.9e-12 77.8 325 25.8
Lsat_1_v5_gn_4_183321 Lactuca sativa HOM05D001292 ORTHO05D001202 2.9e-12 77.8 104 37.5
Gohir.D02G201100 Gossypium hirsutum HOM05D001292 ORTHO05D001202 3.8e-12 77.4 74 41.9
CsaV3_7G006900 Cucumis sativus L. HOM05D001292 ORTHO05D001202 8.4e-12 76.3 152 28.3
Sp1g08320 Schrenkiella parvula HOM05D001292 ORTHO05D001202 1.1e-11 75.9 336 25.3
Gohir.D04G156900 Gossypium hirsutum HOM05D001292 ORTHO05D001202 1.4e-11 75.5 341 24.0
Gorai.012G143900 Gossypium raimondii HOM05D001292 ORTHO05D001202 1.4e-11 75.5 341 24.0
Atru.chr6.1255 Acer truncatum HOM05D001292 ORTHO05D001202 1.9e-11 75.1 109 34.9
Prupe.6G149300 Prunus persica HOM05D001292 ORTHO05D001202 4.2e-11 73.9 84 40.5
C08p13140 Brassica napus HOM05D001292 ORTHO05D001202 5.4e-11 73.6 343 24.2
BolC8t48942H Brassica oleracea HOM05D001292 ORTHO05D001202 5.4e-11 73.6 343 24.2
PSO210G3238 Papaver somniferum HOM05D001292 ORTHO05D001202 5.4e-11 73.6 127 35.4
Lalb_Chr18g0060411 Lupinus albus HOM05D001292 ORTHO05D001202 7.1e-11 73.2 315 25.4
SGA_v2.0_scaffold48G17832 Striga asiatica HOM05D001292 ORTHO05D001202 7.1e-11 73.2 333 27.6
Duzib248G0868 Durio zibethinus HOM05D001292 ORTHO05D001202 9.3e-11 72.8 334 22.5
Lj5A230G43 Lonicera japonica HOM05D001292 ORTHO05D001202 9.3e-11 72.8 148 35.8
BcaC09g52173 Brassica carinata HOM05D001292 ORTHO05D001202 1.2e-10 72.4 195 27.2
C01p05090 Brassica napus HOM05D001292 ORTHO05D001202 1.2e-10 72.4 195 27.2
BolC1t00491H Brassica oleracea HOM05D001292 ORTHO05D001202 1.2e-10 72.4 195 27.2
arahy.Tifrunner.gnm1.ann1.Y95VYD Arachis hypogaea HOM05D001292 ORTHO05D001202 1.6e-10 72.0 305 23.0
A01p04700 Brassica napus HOM05D001292 ORTHO05D001202 2.1e-10 71.6 151 29.8
BraA01t00453Z Brassica rapa HOM05D001292 ORTHO05D001202 2.1e-10 71.6 151 29.8
Manes.07G038300 Manihot esculenta HOM05D001292 ORTHO05D001202 2.1e-10 71.6 312 27.9
AT1G09730 Arabidopsis thaliana HOM05D001292 ORTHO05D001202 2.7e-10 71.2 327 22.9
THA.LOC104820191 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 2.7e-10 71.2 283 26.9
Manes.18G059001 Manihot esculenta HOM05D001292 ORTHO05D001202 7.8e-10 69.7 309 26.9
Lj6g0027662 Lotus japonicus HOM05D001292 ORTHO05D001202 1.0e-09 69.3 70 40.0
PSO170G5589 Papaver somniferum HOM05D001292 ORTHO05D001202 1.0e-09 69.3 130 34.6
Hund27020 Selenicereus undatus HOM05D001292 ORTHO05D001202 1.0e-09 69.3 314 26.1
Glyma.13G256800 Glycine max HOM05D001292 ORTHO05D001202 1.7e-09 68.6 296 26.0
AT4G33620 Arabidopsis thaliana HOM05D001292 ORTHO05D001202 2.3e-09 68.2 292 24.7
Ca_00162_v3 Cicer arietinum L. HOM05D001292 ORTHO05D001202 2.3e-09 68.2 312 24.4
arahy.Tifrunner.gnm1.ann1.31UHS4 Arachis hypogaea HOM05D001292 ORTHO05D001202 3.0e-09 67.8 306 24.2
THA.LOC104807180 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 3.0e-09 67.8 297 27.6
Cc00_g07670 Coffea canephora HOM05D001292 ORTHO05D001202 3.9e-09 67.4 170 32.9
THA.LOC104816798 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 5.1e-09 67.0 312 23.7
Thecc.02G129400 Theobroma cacao HOM05D001292 ORTHO05D001202 6.6e-09 66.6 323 24.8
AL1G20280 Arabidopsis lyrata HOM05D001292 ORTHO05D001202 8.7e-09 66.2 335 24.2
A08p34390 Brassica napus HOM05D001292 ORTHO05D001202 8.7e-09 66.2 346 24.0
Sp7g31340 Schrenkiella parvula HOM05D001292 ORTHO05D001202 8.7e-09 66.2 168 28.6
Medtr3g100390 Medicago truncatula HOM05D001292 ORTHO05D001202 1.1e-08 65.9 338 25.7
CARHR241710 Cardamine hirsuta HOM05D001292 ORTHO05D001202 1.5e-08 65.5 132 28.8
LjContig00408g0003702 Lotus japonicus HOM05D001292 ORTHO05D001202 1.5e-08 65.5 264 25.0
Psat5g046880 Pisum sativum HOM05D001292 ORTHO05D001202 1.5e-08 65.5 300 26.0
Ca_16000_v3 Cicer arietinum L. HOM05D001292 ORTHO05D001202 2.5e-08 64.7 318 25.5
COL.COLO4_32386 Corchorus olitorius HOM05D001292 ORTHO05D001202 2.5e-08 64.7 162 30.9
Thhalv10024447m.g Eutrema salsugineum HOM05D001292 ORTHO05D001202 2.5e-08 64.7 148 27.0
Glyma.06G095600 Glycine max HOM05D001292 ORTHO05D001202 4.3e-08 63.9 297 28.3
Lsat_1_v5_gn_5_140921 Lactuca sativa HOM05D000200 ORTHO05D000262 4.3e-08 63.9 71 38.0
VMungo0540G0648 Vigna mungo HOM05D001292 ORTHO05D001202 4.3e-08 63.9 321 23.1
AL7G17890 Arabidopsis lyrata HOM05D001292 ORTHO05D001202 5.6e-08 63.5 140 30.0
Sabra17G0029900 Salix brachista HOM05D001292 ORTHO05D001202 5.6e-08 63.5 125 29.6
CSS0039925 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 9.6e-08 62.8 84 35.7
CSS0046510 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 9.6e-08 62.8 84 35.7
PSO675G2554 Papaver somniferum HOM05D001292 ORTHO05D001202 9.6e-08 62.8 322 23.6
Carub.0007s0682 Capsella rubella HOM05D001292 ORTHO05D001202 1.3e-07 62.4 132 29.5
Lalb_Chr11g0065021 Lupinus albus HOM05D001292 ORTHO05D001202 2.1e-07 61.6 313 25.6
Atru.chr13.1016 Acer truncatum HOM05D001292 ORTHO05D001202 2.8e-07 61.2 126 34.9
BcaNung06984 Brassica carinata HOM05D001292 ORTHO05D001202 2.8e-07 61.2 181 29.3
DCAR_009563 Daucus carota HOM05D001292 ORTHO05D001202 2.8e-07 61.2 64 48.4
CANSAT54G0160 Cannabis sativa HOM05D001292 ORTHO05D001202 6.2e-07 60.1 302 23.2
VMungo1309G1057 Vigna mungo HOM05D001292 ORTHO05D001202 8.1e-07 59.7 308 26.0
Cpa.g.sc42.5 Carica papaya HOM05D001292 ORTHO05D001202 1.1e-06 59.3 58 41.4
TPR.G9503 Trifolium pratense HOM05D001292 ORTHO05D001202 1.1e-06 59.3 295 23.7
Medtr2g009580 Medicago truncatula HOM05D001292 ORTHO05D001202 1.4e-06 58.9 308 24.7
PSO541G4975 Papaver somniferum HOM05D001292 ORTHO05D001202 1.4e-06 58.9 323 22.3
Psat1g215560 Pisum sativum HOM05D001292 ORTHO05D001202 1.4e-06 58.9 309 23.0
Potri.017G044000 Populus trichocarpa HOM05D001292 ORTHO05D001202 1.8e-06 58.5 259 25.5
Sopen01g048280 Solanum pennellii HOM05D001292 ORTHO05D001202 1.8e-06 58.5 300 25.3
unitig_8.g4849 Utricularia gibba HOM05D001292 ORTHO05D001202 1.8e-06 58.5 77 44.2
CDE02G3610 Ceratophyllum demersum HOM05D001292 ORTHO05D001202 3.1e-06 57.8 112 30.4
Lj1g0015973 Lotus japonicus HOM05D001292 ORTHO05D001202 6.9e-06 56.6 145 28.3
CARHR009700 Cardamine hirsuta HOM05D001292 ORTHO05D001202 9.0e-06 56.2 337 22.8


User provided reference genes

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