Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 5.0e-108 394.4 197 100.0
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 2.5e-22 109.8 125 53.6
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 8.8e-20 101.3 129 48.1
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 5.7e-19 98.6 123 48.0
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 1.7e-18 97.1 125 47.2
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 1.4e-17 94.0 126 45.2
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 1.8e-17 93.6 123 45.5
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 3.1e-17 92.8 123 45.5
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 4.1e-17 92.4 123 45.5
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 4.1e-17 92.4 123 45.5
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.0e-16 90.1 123 44.7
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 2.6e-16 89.7 123 43.9
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.6e-16 89.7 123 43.9
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.6e-16 89.7 123 43.9
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 2.6e-16 89.7 123 43.9
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 4.5e-16 89.0 128 42.2
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 5.9e-16 88.6 126 42.1
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 5.9e-16 88.6 123 43.1
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 7.7e-16 88.2 126 42.1
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 7.7e-16 88.2 145 39.3
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 1.0e-15 87.8 123 42.3
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 1.0e-15 87.8 123 42.3
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 1.3e-15 87.4 124 44.4
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 1.3e-15 87.4 123 42.3
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 1.3e-15 87.4 123 42.3
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 1.7e-15 87.0 127 44.1
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.7e-15 87.0 124 44.4
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 2.2e-15 86.7 124 43.5
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.2e-15 86.7 123 43.1
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.8e-15 85.9 126 42.9
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 3.8e-15 85.9 126 42.9
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 3.8e-15 85.9 129 41.9
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 3.8e-15 85.9 126 44.4
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 5.0e-15 85.5 123 41.5
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 5.0e-15 85.5 129 41.1
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 6.5e-15 85.1 129 40.3
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 6.5e-15 85.1 129 40.3
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 6.5e-15 85.1 126 42.1
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 6.5e-15 85.1 126 42.9
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 8.5e-15 84.7 126 44.4
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 8.5e-15 84.7 125 42.4
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 8.5e-15 84.7 123 41.5
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 1.1e-14 84.3 126 41.3
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.1e-14 84.3 123 42.3
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 1.1e-14 84.3 126 41.3
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 1.5e-14 84.0 123 42.3
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.9e-14 83.6 123 42.3
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.5e-14 83.2 123 42.3
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 3.2e-14 82.8 123 42.3
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 3.2e-14 82.8 126 41.3
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 4.2e-14 82.4 123 39.8
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 5.5e-14 82.0 123 41.5
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 5.5e-14 82.0 122 41.8
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 5.5e-14 82.0 123 39.8
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 5.5e-14 82.0 125 40.8
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 7.2e-14 81.6 125 40.8
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 1.2e-13 80.9 123 40.7
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 1.6e-13 80.5 123 40.7
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 1.6e-13 80.5 123 40.7
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 2.1e-13 80.1 125 41.6
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 2.7e-13 79.7 130 42.3
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 2.7e-13 79.7 126 39.7
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 2.7e-13 79.7 126 39.7
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 3.6e-13 79.3 123 39.0
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 3.6e-13 79.3 123 41.5
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 3.6e-13 79.3 98 46.9
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.6e-13 79.3 126 41.3
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 3.6e-13 79.3 126 41.3
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 8.0e-13 78.2 129 41.9
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 8.0e-13 78.2 102 48.0
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.4e-12 77.4 124 40.3
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.8e-12 77.0 126 40.5
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 3.0e-12 76.3 125 41.6
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 3.0e-12 76.3 121 40.5
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 5.2e-12 75.5 124 37.9
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 6.7e-12 75.1 123 39.8
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 8.8e-12 74.7 121 40.5
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 2.6e-11 73.2 140 35.0
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 2.6e-11 73.2 140 35.0
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 2.6e-11 73.2 125 40.0
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 2.6e-11 73.2 122 36.9
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 3.3e-11 72.8 124 37.1
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 7.4e-11 71.6 123 35.8
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 7.4e-11 71.6 125 41.6
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 9.7e-11 71.2 108 37.0
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.7e-10 70.5 100 46.0
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.7e-10 70.5 100 46.0
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.7e-10 70.5 124 37.9
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.7e-10 70.5 122 37.7
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 2.8e-10 69.7 123 35.8
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 4.8e-10 68.9 126 38.1
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 8.2e-10 68.2 123 39.8
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 8.2e-10 68.2 123 37.4
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 1.1e-09 67.8 123 36.6
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 1.4e-09 67.4 122 36.9
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 1.4e-09 67.4 73 45.2
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 1.4e-09 67.4 124 35.5
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 3.1e-09 66.2 125 39.2
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 7.0e-09 65.1 123 35.0
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 7.0e-09 65.1 123 35.0
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 7.0e-09 65.1 123 35.0
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 7.0e-09 65.1 122 35.2
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 7.0e-09 65.1 109 33.9
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 1.2e-08 64.3 124 37.1
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 2.6e-08 63.2 118 38.1
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 1.0e-07 61.2 121 32.2
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.0e-07 61.2 68 47.1
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.7e-07 60.5 123 34.1
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 1.7e-07 60.5 123 33.3
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 1.7e-07 60.5 126 33.3
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 2.2e-07 60.1 125 36.8
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 2.9e-07 59.7 126 36.5
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 2.9e-07 59.7 68 50.0
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 3.8e-07 59.3 150 29.3
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 3.8e-07 59.3 126 32.5
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 6.5e-07 58.5 122 32.0
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 1.1e-06 57.8 122 32.0
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 9.4e-06 54.7 46 60.9
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 9.4e-06 54.7 123 32.5


User provided reference genes

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