Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 8.5e-108 393.7 196 100.0
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.7e-47 193.4 165 60.6
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.4e-47 191.4 165 60.0
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.1e-46 190.7 165 60.6
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 3.2e-46 189.1 162 61.1
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 1.0e-44 184.1 158 58.9
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 5.1e-44 181.8 166 53.0
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 5.1e-44 181.8 166 53.0
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 6.6e-44 181.4 160 58.1
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.1e-42 176.4 160 55.6
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.8e-42 175.3 164 56.7
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 8.1e-42 174.5 161 53.4
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 8.1e-42 174.5 158 57.6
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.4e-41 173.7 160 54.4
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 4.0e-41 172.2 158 55.1
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 5.3e-41 171.8 164 56.1
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 6.9e-41 171.4 158 53.8
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.5e-40 170.2 160 52.5
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 2.6e-40 169.5 163 54.0
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 7.6e-40 167.9 156 56.4
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 1.3e-39 167.2 162 53.7
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.3e-39 167.2 154 56.5
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.7e-39 166.8 156 55.8
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.7e-39 166.8 156 53.8
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 2.2e-39 166.4 158 53.8
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 4.9e-39 165.2 158 55.7
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 6.4e-39 164.9 158 53.8
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 6.4e-39 164.9 183 51.9
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 6.4e-39 164.9 154 57.8
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 1.1e-38 164.1 160 51.9
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 3.2e-38 162.5 160 51.9
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 4.2e-38 162.2 157 52.9
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 5.4e-38 161.8 158 51.3
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 7.1e-38 161.4 156 53.8
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 9.3e-38 161.0 163 50.3
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 1.2e-37 160.6 162 50.0
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 1.6e-37 160.2 161 50.3
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 1.6e-37 160.2 158 51.9
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 2.1e-37 159.8 162 53.1
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 2.1e-37 159.8 160 51.2
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 2.7e-37 159.5 160 50.6
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 2.7e-37 159.5 156 51.9
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 3.5e-37 159.1 163 51.5
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.6e-37 158.7 154 53.2
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 4.6e-37 158.7 163 49.7
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 4.6e-37 158.7 162 50.0
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 4.6e-37 158.7 162 50.0
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 6.0e-37 158.3 159 50.9
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 7.9e-37 157.9 158 51.9
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.8e-36 156.8 163 50.3
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 2.3e-36 156.4 156 51.3
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.3e-36 156.4 161 53.4
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 2.3e-36 156.4 161 53.4
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 3.9e-36 155.6 167 46.7
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 3.9e-36 155.6 157 52.2
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 5.1e-36 155.2 157 51.6
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 5.1e-36 155.2 157 50.3
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 6.7e-36 154.8 163 49.7
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 6.7e-36 154.8 158 52.5
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 6.7e-36 154.8 157 52.2
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 8.7e-36 154.5 159 47.8
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 8.7e-36 154.5 154 53.9
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 1.1e-35 154.1 156 50.6
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.5e-35 153.7 161 52.8
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 2.5e-35 152.9 156 51.3
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.5e-35 152.9 163 49.1
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 3.3e-35 152.5 156 50.6
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 3.3e-35 152.5 167 46.7
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 4.3e-35 152.1 165 46.7
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 4.3e-35 152.1 165 46.7
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 5.6e-35 151.8 161 47.2
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 5.6e-35 151.8 166 48.2
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 7.4e-35 151.4 159 49.1
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 7.4e-35 151.4 154 50.6
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 9.6e-35 151.0 161 47.2
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 9.6e-35 151.0 154 50.0
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 9.6e-35 151.0 165 46.1
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 9.6e-35 151.0 158 49.4
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 1.3e-34 150.6 160 47.5
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.3e-34 150.6 162 48.1
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 2.1e-34 149.8 165 46.1
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 2.1e-34 149.8 165 47.9
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 2.8e-34 149.4 154 52.6
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 3.7e-34 149.1 163 49.7
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 3.7e-34 149.1 158 48.1
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 8.1e-34 147.9 160 49.4
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.1e-33 147.5 158 47.5
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.1e-33 147.5 165 47.3
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.4e-33 147.1 162 47.5
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 1.8e-33 146.7 182 46.7
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.8e-33 146.7 160 50.0
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 2.4e-33 146.4 160 48.1
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 2.4e-33 146.4 160 49.4
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 3.1e-33 146.0 158 48.1
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 5.3e-33 145.2 165 45.5
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 1.2e-32 144.1 168 47.6
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.2e-32 144.1 160 48.1
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 3.4e-32 142.5 160 50.6
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 3.4e-32 142.5 159 48.4
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 3.4e-32 142.5 169 47.3
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 4.5e-32 142.1 164 45.1
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 4.5e-32 142.1 164 45.1
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.3e-31 140.6 166 50.0
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.3e-31 140.6 168 47.6
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 1.3e-31 140.6 165 47.3
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 2.2e-31 139.8 159 46.5
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.9e-31 139.4 159 45.9
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 3.8e-31 139.0 159 48.4
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 4.9e-31 138.7 165 47.3
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 6.4e-31 138.3 159 47.2
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 6.4e-31 138.3 159 45.3
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 8.4e-31 137.9 158 46.8
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 8.4e-31 137.9 160 48.1
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 8.4e-31 137.9 155 49.7
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.1e-30 137.5 161 48.4
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.9e-30 136.7 159 45.9
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 2.5e-30 136.3 165 46.1
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.2e-30 136.0 140 50.0
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 5.5e-30 135.2 160 46.9
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 7.1e-30 134.8 165 45.5
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 9.3e-30 134.4 159 47.2
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.2e-29 134.0 160 46.9
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 2.7e-29 132.9 159 46.5
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 3.5e-29 132.5 159 46.5
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 4.6e-29 132.1 141 48.2
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 6.0e-29 131.7 159 44.0
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 7.9e-29 131.3 161 45.3
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 7.9e-29 131.3 162 44.4
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 1.0e-28 131.0 159 41.5
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.0e-28 131.0 159 45.3
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 1.8e-28 130.2 161 44.1
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 6.7e-28 128.3 159 47.2
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.1e-27 127.5 156 46.2
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 1.1e-27 127.5 158 43.7
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.5e-27 127.1 158 43.0
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 1.5e-27 127.1 158 43.7
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 6.2e-26 121.7 158 38.6
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 8.2e-26 121.3 161 40.4
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 8.2e-26 121.3 161 40.4
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 3.1e-25 119.4 161 41.0
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 3.1e-25 119.4 161 41.0
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.1e-25 119.4 158 43.7
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 9.0e-25 117.9 157 41.4
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 4.5e-24 115.5 192 35.9
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 2.2e-23 113.2 155 40.0
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.9e-23 112.1 166 39.8
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.0e-20 104.4 171 39.2
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.8e-20 103.6 132 40.9
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 3.0e-20 102.8 106 49.1
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 1.1e-19 100.9 161 36.0
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.1e-19 100.9 159 39.0
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 4.8e-18 95.5 130 43.1
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 6.3e-18 95.1 158 36.7
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 8.2e-18 94.7 135 37.8
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 1.1e-17 94.4 158 36.7
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 1.8e-17 93.6 77 51.9
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.1e-17 92.8 152 38.8
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 4.1e-17 92.4 155 36.8
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 1.5e-16 90.5 160 37.5
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.0e-16 90.1 156 35.3
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.4e-16 89.4 152 38.2
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.7e-15 87.0 152 35.5
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 5.0e-15 85.5 65 61.5
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.9e-14 83.6 76 46.1
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 4.8e-10 68.9 62 54.8
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 1.4e-09 67.4 199 26.6
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 4.1e-09 65.9 58 51.7
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 6.9e-09 65.1 45 68.9
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 3.4e-08 62.8 119 32.8
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.3e-07 60.8 154 29.2
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 3.8e-07 59.3 100 35.0
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 5.5e-06 55.5 153 30.1


User provided reference genes

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