Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.4e-209 732.6 361 100.0
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 4.5e-179 631.3 380 85.5
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.3e-170 603.2 361 82.8
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.7e-157 559.7 356 78.4
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.3e-154 550.1 351 78.3
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 3.8e-154 548.5 334 81.1
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 5.0e-154 548.1 352 76.4
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 6.5e-154 547.7 361 76.7
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.4e-153 546.6 352 76.7
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 5.5e-153 544.7 351 76.4
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 7.2e-153 544.3 351 76.9
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 9.4e-153 543.9 354 76.6
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.2e-152 543.5 336 81.5
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.2e-152 543.5 353 75.6
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 2.1e-152 542.7 352 76.1
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.7e-152 542.3 360 76.1
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 2.7e-152 542.3 360 76.1
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 2.7e-152 542.3 355 75.5
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.7e-152 541.6 353 75.6
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 2.3e-151 539.3 349 76.2
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 2.3e-151 539.3 352 76.1
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.3e-151 539.3 352 76.1
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 2.3e-151 539.3 351 77.8
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 3.0e-151 538.9 358 75.1
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 5.1e-151 538.1 351 76.1
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 6.7e-151 537.7 354 75.4
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 6.7e-151 537.7 334 76.6
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 8.8e-151 537.3 352 75.9
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 8.8e-151 537.3 353 76.8
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.1e-150 537.0 352 75.6
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 2.0e-150 536.2 353 76.2
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 2.6e-150 535.8 356 76.1
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 4.4e-150 535.0 331 78.5
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 5.7e-150 534.6 360 72.8
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 9.7e-150 533.9 354 75.7
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 9.7e-150 533.9 354 75.4
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 2.2e-149 532.7 328 79.0
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 2.2e-149 532.7 358 75.1
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 2.2e-149 532.7 339 76.7
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.2e-149 532.7 353 73.9
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.8e-149 532.3 356 75.6
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.8e-149 532.3 350 76.6
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.1e-148 530.4 351 75.2
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.1e-148 530.4 327 79.8
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.1e-148 528.9 352 73.3
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.1e-148 528.9 341 76.0
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 4.1e-148 528.5 351 74.9
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 9.1e-148 527.3 330 77.6
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.2e-147 526.9 353 74.2
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.6e-147 526.6 358 74.0
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 3.5e-147 525.4 330 77.9
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 4.5e-147 525.0 351 74.9
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 5.9e-147 524.6 353 74.2
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 3.8e-146 521.9 355 73.0
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 5.0e-146 521.5 348 74.4
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 8.5e-146 520.8 351 75.5
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.2e-145 518.5 330 77.3
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 9.4e-145 517.3 379 70.4
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.2e-144 516.9 360 72.2
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.0e-143 513.8 350 72.6
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.3e-143 512.7 350 72.3
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 3.0e-143 512.3 350 73.1
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 3.0e-143 512.3 384 69.0
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 3.0e-143 512.3 354 73.2
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 4.0e-143 511.9 367 70.6
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 5.2e-143 511.5 333 75.4
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 6.7e-143 511.1 333 76.9
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.8e-143 510.8 351 71.8
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.1e-142 510.4 353 71.4
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.2e-141 506.1 355 69.9
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.2e-141 506.1 348 73.6
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 2.8e-141 505.8 332 76.8
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 2.8e-141 505.8 356 71.1
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 2.8e-141 505.8 358 70.1
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 4.8e-141 505.0 364 71.4
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 8.2e-141 504.2 349 73.4
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.1e-140 503.8 356 70.8
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.4e-140 503.4 330 76.1
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.4e-140 503.4 350 71.1
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.8e-140 503.1 330 75.8
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 3.1e-140 502.3 352 71.0
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 5.3e-140 501.5 386 69.2
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 9.1e-140 500.7 333 75.4
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.2e-139 500.4 360 67.8
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.3e-138 496.9 351 70.7
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 2.2e-138 496.1 346 70.8
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 2.2e-138 496.1 352 71.6
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 3.8e-138 495.4 308 80.2
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.8e-138 495.4 348 71.3
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.1e-137 493.8 352 69.9
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.5e-137 492.7 307 78.5
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 3.2e-137 492.3 347 71.2
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 5.5e-137 491.5 351 70.4
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 9.4e-137 490.7 333 72.4
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 2.1e-136 489.6 348 71.0
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 4.7e-136 488.4 360 68.6
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 6.1e-136 488.0 347 70.3
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 8.0e-136 487.6 352 69.0
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 3.0e-135 485.7 322 74.5
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 3.0e-135 485.7 347 69.7
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 4.0e-135 485.3 347 69.7
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 8.8e-135 484.2 350 69.1
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.2e-134 483.8 334 74.6
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.2e-134 483.8 329 74.2
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 3.4e-134 482.3 352 69.0
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 5.7e-134 481.5 310 75.8
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 7.5e-134 481.1 348 69.5
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 9.8e-134 480.7 348 69.5
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.3e-133 480.3 348 69.8
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 2.8e-133 479.2 348 69.8
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.8e-133 479.2 352 68.2
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 2.8e-133 479.2 390 64.4
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 4.1e-132 475.3 329 70.2
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 9.1e-132 474.2 336 68.5
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.2e-131 473.8 350 68.3
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.5e-129 466.1 407 60.4
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 7.2e-129 464.5 338 71.0
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 5.2e-127 458.4 322 70.2
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 6.8e-127 458.0 348 66.4
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 2.6e-126 456.1 352 67.9
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 2.6e-126 456.1 541 48.8
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 4.4e-126 455.3 360 65.8
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 3.7e-125 452.2 323 69.3
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.2e-123 447.2 265 81.1
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.5e-121 440.3 334 67.7
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.6e-120 436.8 329 65.0
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 8.9e-119 431.0 279 77.4
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 5.6e-113 411.8 267 76.4
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 3.6e-112 409.1 348 62.9
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 2.6e-110 402.9 286 71.3
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 5.4e-108 395.2 352 58.5
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 5.4e-100 368.6 285 67.4
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 6.0e-99 365.2 351 55.6
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 3.0e-98 362.8 249 71.5
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 4.3e-97 359.0 236 78.4
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.2e-96 357.5 206 84.0
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.2e-94 350.9 339 52.8
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.3e-93 347.4 232 74.1
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 9.2e-92 341.3 349 55.3
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 3.5e-91 339.3 207 81.2
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.5e-86 323.9 290 55.9
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 6.4e-85 318.5 212 74.5
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.1e-76 291.2 170 82.9
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 1.3e-72 277.7 162 84.0
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.8e-71 273.9 189 71.4
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 1.7e-69 267.3 375 41.9
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.9e-65 253.8 189 66.7
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 5.3e-63 245.7 213 62.0
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.5e-60 236.9 166 71.1
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 2.5e-57 226.9 164 69.5
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 4.5e-54 216.1 276 46.0
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 5.7e-49 199.1 145 69.0
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 5.7e-49 199.1 340 40.3
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.2e-43 181.4 193 51.8
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 2.2e-40 170.6 120 70.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 8.5e-29 132.1 292 34.2
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.6e-27 127.9 127 55.1
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 8.0e-27 125.6 379 30.3
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 1.8e-26 124.4 251 32.7
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 2.0e-25 120.9 71 83.1
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.1e-23 113.6 209 36.4
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 1.5e-20 104.8 71 70.4
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 6.8e-18 95.9 93 53.8
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.4e-17 93.2 57 77.2
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.8e-16 90.5 62 67.7
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.6e-14 84.7 55 76.4
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 7.2e-12 75.9 69 56.5
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 1.0e-10 72.0 139 36.0


User provided reference genes

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