Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 6.5e-188 660.6 340 100.0
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 1.4e-161 573.2 343 86.0
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 8.3e-151 537.3 340 79.1
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 8.3e-151 537.3 340 79.1
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 2.3e-140 502.7 340 74.1
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 1.6e-138 496.5 340 73.5
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.6e-133 479.9 337 73.6
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 4.4e-128 461.8 338 68.6
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 4.4e-128 461.8 341 67.7
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 2.2e-127 459.5 338 69.5
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 2.9e-127 459.1 337 71.2
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 8.3e-127 457.6 335 69.6
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 4.1e-126 455.3 339 67.3
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 7.1e-126 454.5 340 67.9
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 1.2e-125 453.8 340 67.9
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 4.6e-125 451.8 340 67.1
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 4.6e-125 451.8 341 68.6
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 6.0e-125 451.4 340 67.9
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 6.0e-125 451.4 337 69.1
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 6.0e-125 451.4 340 67.4
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 7.8e-125 451.1 338 66.9
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 1.1e-123 447.2 338 67.8
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 2.5e-123 446.0 343 67.3
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 4.3e-123 445.3 337 66.8
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 5.6e-123 444.9 343 67.9
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 1.6e-122 443.4 333 66.7
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 6.2e-122 441.4 340 66.5
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 8.1e-122 441.0 336 67.6
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.1e-121 440.7 342 64.3
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 1.8e-121 439.9 336 65.2
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.8e-121 439.9 340 66.5
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 4.0e-121 438.7 343 67.9
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 2.0e-120 436.4 343 64.4
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 2.6e-120 436.0 342 67.3
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 2.6e-120 436.0 319 69.9
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 2.2e-119 433.0 336 63.7
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 2.9e-119 432.6 344 64.8
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 3.7e-119 432.2 321 69.5
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 4.9e-119 431.8 345 64.1
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 5.4e-118 428.3 341 64.8
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.4e-118 428.3 344 64.0
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.4e-118 428.3 344 64.0
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 7.1e-118 427.9 324 66.7
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 9.2e-118 427.6 344 63.7
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 1.2e-117 427.2 344 64.0
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.2e-117 427.2 333 64.3
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 2.1e-117 426.4 330 65.5
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 2.7e-117 426.0 339 64.0
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 2.7e-117 426.0 337 65.3
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 2.7e-117 426.0 339 64.9
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 2.7e-117 426.0 317 68.8
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 3.5e-117 425.6 339 63.7
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 3.5e-117 425.6 326 65.3
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 3.5e-117 425.6 334 66.5
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 4.6e-117 425.2 340 63.5
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 4.6e-117 425.2 338 64.2
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 6.0e-117 424.9 336 63.7
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 6.0e-117 424.9 340 64.4
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 7.8e-117 424.5 343 65.0
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 7.8e-117 424.5 340 64.1
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 1.0e-116 424.1 321 67.0
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 1.3e-116 423.7 344 62.5
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 1.3e-116 423.7 344 62.5
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 1.3e-116 423.7 339 63.4
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 2.3e-116 422.9 340 64.1
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 2.3e-116 422.9 330 64.2
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 3.9e-116 422.2 262 78.6
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 5.1e-116 421.8 342 63.5
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 6.6e-116 421.4 339 63.1
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 6.6e-116 421.4 329 65.0
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 8.6e-116 421.0 334 64.7
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 1.5e-115 420.2 338 64.5
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 1.9e-115 419.9 336 64.0
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 1.9e-115 419.9 344 62.8
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 5.6e-115 418.3 344 62.8
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 7.3e-115 417.9 330 64.2
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 9.6e-115 417.5 339 62.5
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 2.1e-114 416.4 339 62.2
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 2.1e-114 416.4 335 63.9
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 6.2e-114 414.8 334 63.8
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 1.8e-113 413.3 329 62.6
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 1.8e-113 413.3 329 62.6
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 3.1e-113 412.5 337 62.6
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 4.0e-113 412.1 340 62.6
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 2.0e-112 409.8 359 59.9
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.3e-111 407.1 321 64.2
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 3.8e-111 405.6 335 63.0
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 6.4e-111 404.8 321 64.5
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 1.4e-110 403.7 317 64.0
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 1.4e-110 403.7 326 62.6
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 1.9e-110 403.3 324 63.0
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 2.4e-110 402.9 334 61.1
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 9.3e-110 401.0 320 63.8
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 9.3e-110 401.0 317 64.4
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 6.0e-109 398.3 329 61.4
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 1.1e-107 394.0 322 63.0
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 1.9e-107 393.3 334 61.7
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 4.3e-107 392.1 339 60.8
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 9.9e-104 380.9 327 59.6
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 2.9e-103 379.4 328 58.8
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 2.9e-103 379.4 338 57.4
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 4.9e-103 378.6 341 57.5
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 8.4e-103 377.9 334 58.7
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 8.4e-103 377.9 324 59.0
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 2.4e-102 376.3 318 58.2
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.2e-101 374.0 317 59.9
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 3.0e-100 369.4 321 57.9
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 6.6e-100 368.2 341 58.4
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 1.7e-95 353.6 287 63.1
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 4.3e-91 339.0 253 67.6
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 2.3e-84 316.6 323 48.6
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 7.4e-83 311.6 330 50.9
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 4.8e-82 308.9 352 44.6
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 2.8e-66 256.5 224 58.9
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 3.7e-66 256.1 347 39.8
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 1.3e-63 247.7 227 56.8
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 1.1e-59 234.6 184 62.5
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 5.7e-59 232.3 184 62.0
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 2.8e-58 229.9 179 62.6
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 8.5e-55 218.4 148 70.9
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 1.9e-54 217.2 317 40.1
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 6.3e-50 202.2 159 67.9
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 2.3e-44 183.7 138 66.7
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 5.7e-43 179.1 137 67.2
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 7.5e-43 178.7 288 35.4
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 1.1e-33 148.3 120 59.2
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 1.8e-33 147.5 318 29.9
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 9.1e-33 145.2 363 30.6
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 2.0e-32 144.1 99 71.7
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 2.7e-32 143.7 127 62.2
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 3.5e-32 143.3 116 58.6
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 1.0e-31 141.7 129 53.5
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 5.6e-30 136.0 112 65.2
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 1.6e-29 134.4 103 63.1
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 2.8e-29 133.7 110 66.4
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 2.3e-28 130.6 192 39.6
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 2.3e-28 130.6 98 69.4
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 2.3e-28 130.6 98 69.4
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.7e-26 124.4 165 40.6
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 1.8e-25 120.9 176 40.9
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 2.4e-25 120.6 182 45.1
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 3.2e-25 120.2 171 39.2
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.2e-21 108.2 140 45.7
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 1.6e-21 107.8 84 67.9
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 1.6e-21 107.8 84 67.9
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 1.0e-20 105.1 137 46.0
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 8.9e-20 102.1 216 37.5
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 8.3e-18 95.5 110 43.6
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 1.2e-13 81.6 99 44.4
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 1.4e-12 78.2 125 44.0
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.7e-10 71.2 46 73.9
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 3.7e-10 70.1 79 50.6
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 4.6e-08 63.2 56 57.1


User provided reference genes

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