Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 7.2e-99 364.0 196 100.0
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 2.6e-88 328.9 173 88.4
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.5e-83 313.2 172 83.1
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.5e-83 313.2 172 83.1
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 1.9e-83 312.8 172 82.6
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 9.8e-80 300.4 172 78.5
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 3.7e-79 298.5 173 80.3
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 1.1e-75 287.0 172 75.6
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 4.3e-75 285.0 171 76.0
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 2.1e-74 282.7 172 73.8
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 6.2e-74 281.2 172 72.7
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 2.3e-73 279.3 169 75.1
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 5.2e-73 278.1 174 72.4
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 5.2e-73 278.1 172 73.8
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 6.8e-73 277.7 171 72.5
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 1.2e-72 276.9 172 74.4
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 2.0e-72 276.2 173 72.3
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 2.6e-72 275.8 174 72.4
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 3.4e-72 275.4 171 73.1
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 3.4e-72 275.4 172 73.3
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 4.4e-72 275.0 172 73.8
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 7.5e-72 274.2 172 72.7
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 1.3e-71 273.5 173 70.5
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 2.2e-71 272.7 172 73.8
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 2.9e-71 272.3 172 72.7
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 4.9e-71 271.6 172 70.3
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 4.9e-71 271.6 174 71.8
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 6.4e-71 271.2 175 69.7
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 1.4e-70 270.0 172 70.3
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 1.9e-70 269.6 174 71.3
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 2.4e-70 269.2 172 71.5
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 2.4e-70 269.2 171 69.0
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 3.2e-70 268.9 172 71.5
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 5.4e-70 268.1 173 71.1
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 5.4e-70 268.1 174 67.8
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 5.4e-70 268.1 171 69.6
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 7.0e-70 267.7 172 72.1
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 7.0e-70 267.7 172 69.8
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 9.2e-70 267.3 172 68.6
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 1.2e-69 266.9 171 70.2
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 1.6e-69 266.5 172 68.0
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.6e-69 266.5 172 70.9
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 2.1e-69 266.2 174 70.1
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 3.5e-69 265.4 171 70.2
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 4.6e-69 265.0 172 68.6
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 6.0e-69 264.6 172 70.3
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 6.0e-69 264.6 172 69.8
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 7.8e-69 264.2 172 69.2
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 1.0e-68 263.8 171 71.9
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 1.0e-68 263.8 172 68.0
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 1.7e-68 263.1 169 71.6
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 2.3e-68 262.7 171 71.3
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.0e-68 262.3 171 69.6
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 5.0e-68 261.5 172 68.0
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 6.6e-68 261.2 172 68.0
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 8.6e-68 260.8 172 69.8
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 1.1e-67 260.4 173 69.9
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 1.5e-67 260.0 171 69.6
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 1.5e-67 260.0 177 68.9
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 1.9e-67 259.6 172 69.8
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 1.9e-67 259.6 172 70.3
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 2.5e-67 259.2 173 68.2
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 4.3e-67 258.5 173 68.2
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 9.5e-67 257.3 172 67.4
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 9.5e-67 257.3 173 65.3
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.2e-66 256.9 171 69.6
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 1.2e-66 256.9 172 67.4
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 3.6e-66 255.4 171 69.0
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 3.6e-66 255.4 169 70.4
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 3.6e-66 255.4 169 69.8
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 8.1e-66 254.2 172 65.7
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 1.8e-65 253.1 171 68.4
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 4.0e-65 251.9 172 68.6
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 4.0e-65 251.9 170 68.8
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 4.0e-65 251.9 153 73.9
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 6.8e-65 251.1 167 68.3
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 6.8e-65 251.1 172 65.1
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 8.9e-65 250.8 172 64.5
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 8.9e-65 250.8 172 66.3
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 1.2e-64 250.4 175 65.7
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 2.6e-64 249.2 172 68.0
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 2.6e-64 249.2 173 65.9
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 2.6e-64 249.2 173 65.9
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 1.7e-63 246.5 174 66.1
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 1.9e-62 243.0 157 69.4
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 4.1e-62 241.9 158 70.3
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 4.1e-62 241.9 170 62.9
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 9.2e-62 240.7 158 69.6
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 1.7e-60 236.5 172 61.0
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 5.6e-59 231.5 142 71.1
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 7.3e-59 231.1 171 62.6
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.2e-58 230.3 151 69.5
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 4.7e-58 228.4 152 66.4
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 1.1e-57 227.3 168 63.1
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 2.4e-57 226.1 168 62.5
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 3.1e-57 225.7 171 60.8
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 2.0e-56 223.0 172 58.1
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 4.4e-56 221.9 157 65.0
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 7.6e-56 221.1 158 66.5
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 7.6e-56 221.1 152 63.8
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 9.2e-54 214.2 149 63.8
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 3.5e-53 212.2 169 60.9
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 7.3e-51 204.5 153 60.1
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 1.5e-48 196.8 164 55.5
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 1.9e-46 189.9 174 49.4
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 1.6e-45 186.8 170 50.6
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 4.6e-45 185.3 173 50.3
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 7.8e-45 184.5 128 64.1
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.6e-42 176.8 173 50.9
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 2.8e-42 176.0 134 62.7
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 1.9e-38 163.3 123 60.2
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 1.0e-36 157.5 172 44.2
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 7.1e-30 134.8 126 53.2
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 1.4e-22 110.5 189 34.4
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 7.1e-22 108.2 153 43.1
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 2.7e-21 106.3 66 74.2
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 5.1e-20 102.1 178 38.8
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.9e-14 83.6 59 59.3
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 1.6e-13 80.5 89 48.3
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 1.3e-07 60.8 177 27.7
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 1.3e-07 60.8 177 27.7
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 5.0e-07 58.9 177 27.1
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 5.0e-07 58.9 177 27.1
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 5.0e-07 58.9 177 27.1
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 1.1e-06 57.8 171 29.8
BolC4t23645H Brassica oleracea HOM05D000003 ORTHO05D001498 1.4e-06 57.4 68 42.6
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 1.4e-06 57.4 171 29.8
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 1.4e-06 57.4 171 29.8
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 1.9e-06 57.0 177 27.1
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 1.9e-06 57.0 177 27.1
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 2.5e-06 56.6 173 29.5
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 3.2e-06 56.2 175 29.7
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 3.2e-06 56.2 175 29.7
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 3.2e-06 56.2 175 29.7
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 4.2e-06 55.8 179 27.4
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 4.2e-06 55.8 176 26.7
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 5.5e-06 55.5 151 29.8
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 7.2e-06 55.1 175 28.6
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 7.2e-06 55.1 177 27.1
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 7.2e-06 55.1 172 27.9
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 9.4e-06 54.7 174 28.7


User provided reference genes

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