Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 1.1e-256 889.4 424 100.0
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 1.7e-92 344.0 288 61.5
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 1.2e-66 258.1 349 43.8
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 2.4e-51 207.2 291 40.2
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 1.0e-49 201.8 358 36.3
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 1.4e-46 191.4 290 40.0
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 1.2e-45 188.3 290 39.0
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 3.4e-45 186.8 288 37.8
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 2.5e-43 180.6 358 33.5
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 2.5e-43 180.6 289 37.7
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 4.2e-43 179.9 312 34.9
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 9.3e-43 178.7 354 33.6
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 4.6e-42 176.4 358 33.8
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 6.0e-42 176.0 288 36.8
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 1.8e-41 174.5 354 33.3
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 2.3e-41 174.1 288 36.1
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 1.5e-40 171.4 363 33.9
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 1.3e-39 168.3 291 37.1
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 2.1e-39 167.5 357 33.6
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 8.2e-39 165.6 358 33.2
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 1.1e-38 165.2 363 33.6
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 2.4e-38 164.1 288 36.5
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 4.0e-38 163.3 354 33.6
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 6.9e-38 162.5 288 35.1
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 6.9e-38 162.5 356 32.0
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 5.8e-37 159.5 297 34.7
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 5.8e-37 159.5 287 35.2
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 1.3e-36 158.3 307 35.5
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 1.7e-36 157.9 291 34.4
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 1.7e-36 157.9 287 35.2
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 2.9e-36 157.1 360 31.9
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 3.8e-36 156.8 287 35.5
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 8.4e-36 155.6 290 34.8
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 1.1e-35 155.2 352 32.4
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 1.9e-35 154.5 293 35.2
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 2.5e-35 154.1 387 30.2
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 5.5e-35 152.9 297 35.0
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 7.1e-35 152.5 358 29.9
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 1.2e-34 151.8 287 34.8
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 2.1e-34 151.0 287 34.5
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 2.1e-34 151.0 289 35.3
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 2.1e-34 151.0 293 34.1
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 3.5e-34 150.2 293 34.1
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 6.1e-34 149.4 290 33.1
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 6.1e-34 149.4 286 32.9
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 1.3e-33 148.3 294 33.0
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 1.3e-33 148.3 355 30.4
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 1.8e-33 147.9 293 32.4
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 3.3e-32 143.7 367 30.0
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 9.7e-32 142.1 367 29.7
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 1.3e-31 141.7 289 31.8
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 2.2e-31 141.0 284 31.3
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 2.2e-31 141.0 284 31.3
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 4.8e-31 139.8 356 28.9
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 6.3e-31 139.4 284 31.0
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 6.3e-31 139.4 358 31.0
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 1.1e-30 138.7 291 33.0
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 3.1e-30 137.1 288 32.3
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 5.3e-30 136.3 286 31.8
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 6.9e-30 136.0 286 31.1
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 1.2e-29 135.2 289 31.8
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 1.2e-29 135.2 289 31.8
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 1.7e-28 131.3 288 29.9
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 2.2e-28 131.0 253 31.6
vmacro20290 Vaccinium macrocarpon HOM05D001594 ORTHO05D002862 5.0e-28 129.8 87 71.3
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 6.5e-28 129.4 357 29.4
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 8.5e-28 129.0 356 28.7
vmacro05428 Vaccinium macrocarpon HOM05D000528 ORTHO05D001569 1.1e-27 128.6 87 73.6
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 1.1e-27 128.6 289 32.2
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 4.2e-27 126.7 287 30.3
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 4.2e-27 126.7 355 28.7
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 5.5e-27 126.3 357 29.4
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 7.2e-27 125.9 291 30.9
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 1.6e-26 124.8 357 28.3
Oeu039641.2 Olea europaea HOM05D006061 ORTHO05D007450 2.1e-26 124.4 136 47.1
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 7.9e-26 122.5 356 26.7
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.8e-25 121.3 136 44.1
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 3.0e-25 120.6 290 30.0
Gohir.D10G064900 Gossypium hirsutum HOM05D006061 ORTHO05D007450 1.1e-24 118.6 135 43.7
vmacro14257 Vaccinium macrocarpon HOM05D000177 ORTHO05D002683 1.1e-24 118.6 77 72.7
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 5.7e-24 116.3 289 28.7
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 2.2e-23 114.4 354 28.0
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 7.7e-21 105.9 320 27.5
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 1.7e-20 104.8 74 68.9
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 7.2e-19 99.4 141 41.8
Sed0002506 Sechium edule HOM05D003467 ORTHO05D004220 3.9e-17 93.6 52 90.4
HPP92_014830 Vanilla planifolia HOM05D006061 ORTHO05D007450 5.7e-16 89.7 133 39.1
Dinv06674 Davidia involucrata HOM05D003467 ORTHO05D004220 4.8e-15 86.7 61 70.5
SHI47986 Sapria himalayana HOM05D003467 ORTHO05D004220 1.1e-14 85.5 71 66.2
Lj2C1229G12 Lonicera japonica HOM05D003467 ORTHO05D004220 3.1e-14 84.0 61 68.9
ClCG11G007180 Citrullus lanatus HOM05D003467 ORTHO05D004220 9.1e-14 82.4 50 80.0
Actinidia34926 Actinidia chinensis HOM05D003467 ORTHO05D004220 2.6e-13 80.9 61 67.2
Sed0025530 Sechium edule HOM05D003467 ORTHO05D004220 5.9e-13 79.7 52 78.8
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 5.9e-13 79.7 52 78.8
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 1.0e-12 79.0 132 39.4
CANSAT16G0031 Cannabis sativa HOM05D003467 ORTHO05D004220 1.7e-12 78.2 43 88.4
SGA_v2.0_scaffold255G45505 Striga asiatica HOM05D003467 ORTHO05D004220 2.2e-12 77.8 61 65.6
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 2.9e-12 77.4 317 26.5
vmacro04255 Vaccinium macrocarpon HOM05D000001 ORTHO05D009069 3.8e-12 77.0 59 61.0
SHI50250 Sapria himalayana HOM05D003467 ORTHO05D004220 1.1e-11 75.5 66 60.6
Psat1g093320 Pisum sativum HOM05D006061 ORTHO05D007450 1.5e-11 75.1 124 31.5
SHI37879 Sapria himalayana HOM05D003467 ORTHO05D004220 1.9e-11 74.7 66 60.6
SHI38047 Sapria himalayana HOM05D003467 ORTHO05D004220 1.9e-11 74.7 66 60.6
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 4.2e-11 73.6 268 26.9
Psat0ss8385g0040 Pisum sativum HOM05D006061 ORTHO05D007450 5.5e-11 73.2 124 32.3
CsaV3_UNG208190 Cucumis sativus L. HOM05D003467 ORTHO05D004220 7.2e-11 72.8 53 75.5
SHI38317 Sapria himalayana HOM05D003467 ORTHO05D004220 9.4e-11 72.4 66 60.6
Solyc00g500103.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 2.1e-10 71.2 61 62.3
Solyc00g500228.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 2.1e-10 71.2 61 62.3
Nitab4.5_0001796g0090 Nicotiana tabacum HOM05D003467 ORTHO05D004220 4.7e-10 70.1 61 60.7
Rhsim07G0055600 Rhododendron simsii HOM05D003467 ORTHO05D004220 4.7e-10 70.1 61 62.3
SabraMtG0006300 Salix brachista HOM05D003467 ORTHO05D004220 4.7e-10 70.1 74 56.8
SHI54334 Sapria himalayana HOM05D003467 ORTHO05D004220 4.7e-10 70.1 54 66.7
PGSC0003DMG401008792 Solanum tuberosum HOM05D003467 ORTHO05D004220 8.0e-10 69.3 62 62.9
Nn1g10002 Nelumbo nucifera HOM05D003467 ORTHO05D004220 1.0e-09 68.9 61 60.7
SHI37961 Sapria himalayana HOM05D003467 ORTHO05D004220 1.0e-09 68.9 37 86.5
SHI40343 Sapria himalayana HOM05D003467 ORTHO05D004220 1.0e-09 68.9 37 86.5
SHI42055 Sapria himalayana HOM05D003467 ORTHO05D004220 1.0e-09 68.9 37 86.5
SHI52974 Sapria himalayana HOM05D003467 ORTHO05D004220 1.0e-09 68.9 37 86.5
SHI36699 Sapria himalayana HOM05D003467 ORTHO05D004220 2.3e-09 67.8 66 57.6
SHI37556 Sapria himalayana HOM05D003467 ORTHO05D004220 2.3e-09 67.8 37 83.8
Sopen05g012590 Solanum pennellii HOM05D003467 ORTHO05D004220 2.3e-09 67.8 61 59.0
Nitab4.5_0004471g0080 Nicotiana tabacum HOM05D003467 ORTHO05D004220 3.0e-09 67.4 61 59.0
Nitab4.5_0009703g0010 Nicotiana tabacum HOM05D003467 ORTHO05D004220 3.0e-09 67.4 61 59.0
Peaxi162Scf00197g00034 Petunia axillaris HOM05D003467 ORTHO05D004220 3.0e-09 67.4 66 59.1
unitig_87.g27965 Utricularia gibba HOM05D003467 ORTHO05D004220 3.9e-09 67.0 50 68.0
Aa31csc239G20 Aethionema arabicum HOM05D003467 ORTHO05D004220 8.8e-09 65.9 47 76.6
BcaC08g43711 Brassica carinata HOM05D003467 ORTHO05D004220 8.8e-09 65.9 47 76.6
BNapus_Darmor_BZH_scaffold_234p00200 Brassica napus HOM05D003467 ORTHO05D004220 8.8e-09 65.9 47 76.6
BolSC28t60347H Brassica oleracea HOM05D003467 ORTHO05D004220 8.8e-09 65.9 47 76.6
BraSC48t46273Z Brassica rapa HOM05D003467 ORTHO05D004220 8.8e-09 65.9 47 76.6
CDE09G0654 Ceratophyllum demersum HOM05D006061 ORTHO05D007450 8.8e-09 65.9 80 45.0
Sp3g25530 Schrenkiella parvula HOM05D003467 ORTHO05D004220 8.8e-09 65.9 47 76.6
CARHR282930 Cardamine hirsuta HOM05D003467 ORTHO05D004220 1.1e-08 65.5 47 74.5
SHI52074 Sapria himalayana HOM05D003467 ORTHO05D004220 2.0e-08 64.7 57 61.4
AL3G44370 Arabidopsis lyrata HOM05D003467 ORTHO05D004220 2.6e-08 64.3 47 74.5
AT2G07715 Arabidopsis thaliana HOM05D003467 ORTHO05D004220 2.6e-08 64.3 47 74.5
ATMG00560 Arabidopsis thaliana HOM05D003467 ORTHO05D004220 2.6e-08 64.3 47 74.5
BolC4t23495H Brassica oleracea HOM05D003467 ORTHO05D004220 2.6e-08 64.3 47 74.5
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 2.6e-08 64.3 133 33.1
SHI38985 Sapria himalayana HOM05D003467 ORTHO05D004220 2.6e-08 64.3 64 54.7
SHI53641 Sapria himalayana HOM05D003467 ORTHO05D004220 2.6e-08 64.3 35 85.7
SHI38898 Sapria himalayana HOM05D003467 ORTHO05D004220 3.3e-08 63.9 35 85.7
CAN.G134.20 Capsicum annuum HOM05D003467 ORTHO05D004220 4.4e-08 63.5 61 54.1
CARHR288290 Cardamine hirsuta HOM05D003467 ORTHO05D004220 4.4e-08 63.5 47 72.3
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 4.4e-08 63.5 133 32.3
SHI53305 Sapria himalayana HOM05D003467 ORTHO05D004220 7.4e-08 62.8 35 85.7
CAN.G502.14 Capsicum annuum HOM05D003467 ORTHO05D004220 9.7e-08 62.4 55 60.0
SHI52008 Sapria himalayana HOM05D003467 ORTHO05D004220 9.7e-08 62.4 66 53.0
SHI34611 Sapria himalayana HOM05D003467 ORTHO05D004220 1.3e-07 62.0 35 82.9
Sed0003411 Sechium edule HOM05D006061 ORTHO05D007450 1.3e-07 62.0 56 55.4
SHI52927 Sapria himalayana HOM05D003467 ORTHO05D004220 1.7e-07 61.6 66 54.5
SHI36967 Sapria himalayana HOM05D003467 ORTHO05D004220 2.2e-07 61.2 46 65.2
Thhalv10013769m.g Eutrema salsugineum HOM05D003467 ORTHO05D004220 3.7e-07 60.5 47 72.3
MBI16_g09480_MAGBIO Magnolia biondii HOM05D003467 ORTHO05D004220 4.8e-07 60.1 43 72.1
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 6.3e-07 59.7 120 34.2
Nitab4.5_0009709g0060 Nicotiana tabacum HOM05D003467 ORTHO05D004220 6.3e-07 59.7 61 55.7
SHI37866 Sapria himalayana HOM05D003467 ORTHO05D004220 6.3e-07 59.7 39 76.9
SHI48358 Sapria himalayana HOM05D003467 ORTHO05D004220 8.2e-07 59.3 64 53.1
SHI38786 Sapria himalayana HOM05D003467 ORTHO05D004220 3.1e-06 57.4 64 59.4
CDE02G2877 Ceratophyllum demersum HOM05D003467 ORTHO05D004220 4.1e-06 57.0 43 67.4
Peaxi162Scf00507g00009 Petunia axillaris HOM05D003467 ORTHO05D004220 4.1e-06 57.0 58 55.2
SHI36996 Sapria himalayana HOM05D003467 ORTHO05D004220 7.0e-06 56.2 53 56.6
SHI37209 Sapria himalayana HOM05D003467 ORTHO05D004220 7.0e-06 56.2 29 89.7
SGA_v2.0_scaffold507G52535 Striga asiatica HOM05D003467 ORTHO05D004220 7.0e-06 56.2 47 57.4


User provided reference genes

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