Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 2.9e-180 635.2 333 100.0
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.6e-114 416.8 337 68.2
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 5.4e-78 295.4 327 54.1
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 2.8e-71 273.1 341 50.4
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.7e-61 240.0 339 47.8
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 1.1e-59 234.6 328 47.9
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 2.1e-58 230.3 333 47.4
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.6e-56 223.4 257 52.9
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 3.7e-55 219.5 335 41.8
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 4.1e-54 216.1 335 43.0
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 4.1e-54 216.1 335 42.7
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 2.7e-53 213.4 327 42.5
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 8.6e-52 208.4 325 44.0
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 8.6e-52 208.4 352 43.5
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 2.5e-51 206.8 335 42.4
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 9.5e-51 204.9 353 41.9
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 2.1e-50 203.8 358 40.8
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 2.1e-50 203.8 337 42.7
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 2.3e-49 200.3 370 42.7
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 6.8e-49 198.7 359 41.8
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 2.0e-48 197.2 369 38.8
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 7.6e-48 195.3 336 44.0
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 6.4e-47 192.2 352 39.2
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 6.4e-47 192.2 327 39.4
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 7.1e-46 188.7 353 38.5
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 1.6e-45 187.6 341 41.9
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 3.5e-45 186.4 329 46.2
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 4.6e-45 186.0 347 42.9
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 4.6e-45 186.0 360 38.6
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 6.0e-45 185.7 336 41.7
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.3e-44 184.5 348 39.4
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 2.3e-44 183.7 355 39.2
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 3.9e-44 183.0 347 39.2
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.1e-43 181.4 343 39.9
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 1.1e-43 181.4 346 39.3
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 1.5e-43 181.0 355 37.5
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 1.5e-43 181.0 339 41.9
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.9e-43 180.6 343 39.7
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 1.6e-42 177.6 349 39.0
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.8e-42 176.8 348 40.8
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 2.8e-42 176.8 344 39.5
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 5.2e-41 172.6 336 39.9
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.2e-41 172.6 345 38.3
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 5.2e-41 172.6 339 40.7
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 8.9e-41 171.8 345 38.3
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 2.0e-40 170.6 336 40.2
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 2.0e-40 170.6 342 39.8
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 4.4e-40 169.5 347 38.0
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 9.9e-40 168.3 354 41.2
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.2e-39 167.2 372 35.5
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 2.2e-39 167.2 328 41.2
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 2.9e-39 166.8 355 37.5
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 3.8e-39 166.4 342 37.4
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 8.4e-39 165.2 335 38.2
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 8.4e-39 165.2 337 39.5
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.1e-38 164.9 340 37.9
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.4e-38 164.5 328 40.2
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 4.2e-38 162.9 358 35.5
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 7.1e-38 162.2 357 35.9
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 9.3e-38 161.8 345 35.9
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 9.3e-38 161.8 356 35.7
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 2.1e-37 160.6 293 39.6
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 2.7e-37 160.2 334 37.7
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 4.6e-37 159.5 336 37.5
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 6.0e-37 159.1 364 38.5
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 1.0e-36 158.3 362 36.2
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 1.7e-36 157.5 327 38.5
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 1.7e-36 157.5 337 38.0
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 6.6e-36 155.6 325 37.2
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 1.5e-35 154.5 371 34.2
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.5e-35 154.5 363 34.7
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.9e-35 154.1 325 36.9
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 2.5e-35 153.7 373 34.3
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.5e-35 153.7 330 37.6
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 3.3e-35 153.3 354 36.2
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 3.3e-35 153.3 363 34.4
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 4.3e-35 152.9 354 36.4
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 7.3e-35 152.1 344 38.1
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 7.3e-35 152.1 357 34.7
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 7.3e-35 152.1 335 37.0
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 9.6e-35 151.8 367 35.7
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 9.6e-35 151.8 337 37.7
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 1.3e-34 151.4 360 33.3
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 2.1e-34 150.6 340 37.6
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 3.6e-34 149.8 355 35.5
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 6.2e-34 149.1 361 35.7
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.1e-33 148.3 376 33.5
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 1.1e-33 148.3 348 36.8
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 1.8e-33 147.5 326 37.4
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 9.0e-33 145.2 362 36.7
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 1.2e-32 144.8 368 33.2
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 2.0e-32 144.1 374 34.5
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 2.0e-32 144.1 374 34.5
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 4.4e-32 142.9 348 36.5
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 9.9e-32 141.7 352 33.2
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 1.3e-31 141.4 337 36.5
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.7e-31 141.0 361 32.7
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.2e-31 140.6 370 33.8
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.2e-31 140.6 374 32.4
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 4.9e-31 139.4 362 35.9
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 1.9e-30 137.5 372 34.1
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 1.9e-30 137.5 346 34.1
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 1.9e-30 137.5 346 34.1
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 1.9e-30 137.5 346 34.1
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 4.2e-30 136.3 374 32.4
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 4.2e-30 136.3 349 36.1
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 4.2e-30 136.3 349 36.1
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 2.1e-29 134.0 347 34.0
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 2.1e-29 134.0 347 34.0
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 2.1e-29 134.0 347 34.0
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 7.9e-29 132.1 154 51.9
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.7e-28 131.0 276 38.8
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 2.3e-28 130.6 380 31.3
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 2.3e-28 130.6 378 32.8
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.5e-27 127.9 376 33.0
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 2.5e-27 127.1 360 33.1
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 7.3e-27 125.6 346 34.1
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 1.6e-26 124.4 414 30.7
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 4.8e-26 122.9 348 32.2
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 4.8e-26 122.9 348 32.2
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.4e-25 121.3 355 32.7
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 3.1e-25 120.2 334 36.8
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 3.8e-23 113.2 357 31.4
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 5.4e-22 109.4 366 30.1
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 5.4e-22 109.4 375 33.6
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 9.3e-22 108.6 341 33.1
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 3.5e-21 106.7 348 30.2
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 3.5e-21 106.7 360 29.2
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 4.6e-21 106.3 217 37.8
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 6.0e-21 105.9 379 30.6
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 1.3e-20 104.8 121 52.9
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 1.3e-20 104.8 354 31.1
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 7.4e-19 99.0 126 50.8
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 4.8e-18 96.3 301 32.6
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.0e-16 90.9 364 29.9
Actinidia25795 Actinidia chinensis HOM05D005109 ORTHO05D006084 7.6e-16 89.0 116 49.1
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 3.0e-12 77.0 345 27.5
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 5.1e-12 76.3 221 31.2
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.3e-10 71.6 225 32.0
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 1.8e-09 67.8 337 29.7
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 4.1e-09 66.6 85 45.9
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 2.5e-06 57.4 119 41.2
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 7.2e-06 55.8 154 35.7


User provided reference genes

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