Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 2.7e-33 144.8 78 100.0
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 1.4e-24 115.9 78 80.8
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 9.5e-18 93.2 69 66.7
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 5.7e-15 84.0 65 67.7
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.7e-14 82.4 67 67.2
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 1.4e-13 79.3 71 57.7
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 3.2e-13 78.2 71 54.9
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 4.1e-13 77.8 49 77.6
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 4.1e-13 77.8 67 65.7
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 9.2e-13 76.6 49 75.5
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 1.2e-12 76.3 53 71.7
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.6e-12 75.9 49 75.5
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 1.6e-12 75.9 67 56.7
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 4.6e-12 74.3 48 79.2
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 4.6e-12 74.3 46 76.1
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 5.9e-12 73.9 62 62.9
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 5.9e-12 73.9 52 69.2
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 5.9e-12 73.9 49 75.5
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 1.3e-11 72.8 51 68.6
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.3e-11 72.8 51 68.6
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 1.7e-11 72.4 60 60.0
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 2.9e-11 71.6 53 64.2
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 3.9e-11 71.2 53 64.2
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 3.9e-11 71.2 70 54.3
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 3.9e-11 71.2 70 51.4
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 6.6e-11 70.5 47 70.2
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 6.6e-11 70.5 72 55.6
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 8.6e-11 70.1 57 57.9
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 1.9e-10 68.9 66 57.6
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 3.3e-10 68.2 49 65.3
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 3.3e-10 68.2 50 66.0
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 4.3e-10 67.8 54 61.1
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 5.6e-10 67.4 74 51.4
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 7.3e-10 67.0 68 51.5
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 7.3e-10 67.0 66 57.6
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 7.3e-10 67.0 61 55.7
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 9.5e-10 66.6 66 53.0
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 9.5e-10 66.6 66 54.5
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 9.5e-10 66.6 56 53.6
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 9.5e-10 66.6 76 51.3
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 9.5e-10 66.6 49 63.3
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 1.6e-09 65.9 54 59.3
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 1.6e-09 65.9 54 59.3
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 1.6e-09 65.9 63 54.0
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 1.6e-09 65.9 56 53.6
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 1.6e-09 65.9 68 54.4
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 2.1e-09 65.5 68 52.9
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 2.8e-09 65.1 49 59.2
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 4.7e-09 64.3 51 56.9
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 6.2e-09 63.9 54 57.4
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 6.2e-09 63.9 54 57.4
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 8.0e-09 63.5 48 66.7
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 8.0e-09 63.5 47 63.8
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 1.0e-08 63.2 48 62.5
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 1.4e-08 62.8 67 49.3
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 1.8e-08 62.4 62 53.2
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 1.8e-08 62.4 48 62.5
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 2.3e-08 62.0 61 55.7
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 2.3e-08 62.0 49 59.2
Peaxi162Scf00570g00076 Petunia axillaris HOM05D007833 ORTHO05D009855 3.1e-08 61.6 48 64.6
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 4.0e-08 61.2 49 55.1
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 5.2e-08 60.8 53 56.6
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 6.8e-08 60.5 66 50.0
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 8.9e-08 60.1 70 44.3
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 8.9e-08 60.1 48 56.2
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 1.2e-07 59.7 48 58.3
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 1.5e-07 59.3 51 56.9
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 2.6e-07 58.5 43 65.1
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 3.4e-07 58.2 45 57.8
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 3.4e-07 58.2 66 47.0
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 4.4e-07 57.8 61 44.3
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 9.8e-07 56.6 55 49.1
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 9.8e-07 56.6 65 55.4
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 9.8e-07 56.6 43 62.8
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 9.8e-07 56.6 43 62.8
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 9.8e-07 56.6 51 56.9
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 9.8e-07 56.6 78 46.2
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 1.3e-06 56.2 43 62.8
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.3e-06 56.2 60 51.7
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 1.7e-06 55.8 42 64.3
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 2.9e-06 55.1 53 52.8
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 3.7e-06 54.7 43 60.5
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 6.4e-06 53.9 49 55.1
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 8.3e-06 53.5 58 44.8


User provided reference genes

Program Settings