Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02530 Vaccinium macrocarpon HOM05D005775 ORTHO05D000023 1.5e-244 849.4 503 100.0
Rhsim13G0020300 Rhododendron simsii HOM05D005775 ORTHO05D000023 2.3e-165 586.3 504 74.6
CSS0012831 Camellia sinensis var. sinensis HOM05D005775 ORTHO05D000023 5.7e-156 555.1 517 71.4
Rhsim01G0278600 Rhododendron simsii HOM05D005775 ORTHO05D000023 3.4e-153 545.8 515 69.1
Actinidia24301 Actinidia chinensis HOM05D005775 ORTHO05D000023 2.9e-152 542.7 503 69.4
Haze_04786 Corylus avellana HOM05D005775 ORTHO05D000023 2.4e-138 496.5 520 64.2
Dinv32979 Davidia involucrata HOM05D005775 ORTHO05D000023 2.2e-136 490.0 516 65.7
Dinv11278 Davidia involucrata HOM05D005775 ORTHO05D000023 2.5e-135 486.5 508 65.4
Prupe.8G249700 Prunus persica HOM05D005775 ORTHO05D000023 2.3e-133 479.9 521 62.6
Hma1.2p1_0209F.1_g089290 Hydrangea macrophylla HOM05D005775 ORTHO05D000023 1.0e-128 464.5 518 62.5
Thecc.01G287300 Theobroma cacao HOM05D005775 ORTHO05D000023 1.5e-127 460.7 530 59.2
Ciclev10019759m.g Citrus clementina HOM05D005775 ORTHO05D000023 4.2e-127 459.1 514 60.1
Lj2C1182T1 Lonicera japonica HOM05D005775 ORTHO05D000023 5.5e-127 458.8 435 70.3
Manes.01G212200 Manihot esculenta HOM05D005775 ORTHO05D000023 2.6e-124 449.9 513 62.0
Peaxi162Scf00517g00426 Petunia axillaris HOM05D005775 ORTHO05D000023 3.4e-124 449.5 509 59.5
Aqoxy2G03167 Aquilegia oxysepala HOM05D005775 ORTHO05D000023 2.2e-123 446.8 512 59.2
RcHm_v2.0_Chr6g0292231 Rosa chinensis HOM05D005775 ORTHO05D000023 2.3e-120 436.8 522 59.2
QL12p023176 Quercus lobata HOM05D005775 ORTHO05D000023 2.9e-120 436.4 522 59.2
GSVIVG01011040001 Vitis vinifera HOM05D005775 ORTHO05D000023 2.8e-118 429.9 484 62.6
FAN20G1843 Fragaria x ananassa HOM05D005775 ORTHO05D000023 1.0e-117 427.9 520 57.9
Gohir.D08G079600 Gossypium hirsutum HOM05D005775 ORTHO05D000023 2.3e-117 426.8 534 58.1
Gorai.004G084600 Gossypium raimondii HOM05D005775 ORTHO05D000023 5.2e-117 425.6 534 57.9
Gohir.A08G071400 Gossypium hirsutum HOM05D005775 ORTHO05D000023 1.3e-115 421.0 534 57.7
CiPaw.09G181700 Carya illinoinensis HOM05D005775 ORTHO05D000023 2.8e-115 419.9 518 58.1
Lalb_Chr17g0335721 Lupinus albus HOM05D005775 ORTHO05D000023 3.7e-115 419.5 514 57.0
Glyma.03G148400 Glycine max HOM05D005775 ORTHO05D000023 2.0e-113 413.7 486 58.4
Glyma.19G151700 Glycine max HOM05D005775 ORTHO05D000023 3.5e-113 412.9 510 57.3
FAN27G3110 Fragaria x ananassa HOM05D005775 ORTHO05D000023 1.1e-111 407.9 520 56.7
Lj1g0019119 Lotus japonicus HOM05D005775 ORTHO05D000023 1.5e-111 407.5 515 55.1
Sc17g0003740 Simmondsia chinensis HOM05D005775 ORTHO05D000023 4.3e-111 406.0 453 62.5
Oeu047904.1 Olea europaea HOM05D005775 ORTHO05D000023 4.7e-110 402.5 476 60.3
TWI14G1024 Tripterygium wilfordii HOM05D005775 ORTHO05D000023 6.1e-110 402.1 514 56.6
Sed0017897 Sechium edule HOM05D005775 ORTHO05D000023 4.4e-108 396.0 514 57.2
TAR365G0919 Trochodendron aralioides HOM05D005775 ORTHO05D000023 4.4e-108 396.0 516 57.0
HanXRQChr09g0252061 Helianthus annuus HOM05D005775 ORTHO05D000023 7.5e-108 395.2 501 57.1
ClCG00G003600 Citrullus lanatus HOM05D005775 ORTHO05D000023 1.7e-107 394.0 431 50.6
CAN.G438.46 Capsicum annuum HOM05D005775 ORTHO05D000023 8.3e-107 391.7 498 56.8
CANSAT25G1854 Cannabis sativa HOM05D005775 ORTHO05D000023 1.4e-106 391.0 518 55.8
DCAR_005831 Daucus carota HOM05D005775 ORTHO05D000023 2.4e-106 390.2 513 54.4
Eucgr.H01610 Eucalyptus grandis HOM05D005775 ORTHO05D000023 7.0e-106 388.7 519 56.5
Cc01_g19990 Coffea canephora HOM05D005775 ORTHO05D000023 2.0e-105 387.1 439 62.6
ClCG00G000240 Citrullus lanatus HOM05D005775 ORTHO05D000023 3.5e-105 386.3 431 63.3
ClCG10G003500 Citrullus lanatus HOM05D005775 ORTHO05D000023 3.5e-105 386.3 431 63.3
PGSC0003DMG400026158 Solanum tuberosum HOM05D005775 ORTHO05D000023 4.6e-105 386.0 505 55.8
Cpa.g.sc731.2 Carica papaya HOM05D005775 ORTHO05D000023 7.8e-105 385.2 448 60.9
COL.COLO4_08057 Corchorus olitorius HOM05D005775 ORTHO05D000023 1.3e-104 384.4 530 53.0
Solyc07g053060.3 Solanum lycopersicum HOM05D005775 ORTHO05D000023 1.3e-104 384.4 506 56.3
TAR636G1825 Trochodendron aralioides HOM05D005775 ORTHO05D000023 3.9e-104 382.9 512 56.1
MELO3C014018.2 Cucumis melo HOM05D005775 ORTHO05D000023 1.5e-103 380.9 454 60.4
Migut.N02129 Erythranthe guttata HOM05D005775 ORTHO05D000023 1.9e-103 380.6 508 56.1
Potri.016G119600 Populus trichocarpa HOM05D005775 ORTHO05D000023 1.9e-103 380.6 419 62.8
FAN24G2890 Fragaria x ananassa HOM05D005775 ORTHO05D000023 7.3e-103 378.6 524 54.8
MD03G1273200 Malus domestica HOM05D005775 ORTHO05D000023 7.3e-103 378.6 529 55.2
Hund05366 Selenicereus undatus HOM05D005775 ORTHO05D000023 9.5e-103 378.3 519 53.8
Sopen07g026610 Solanum pennellii HOM05D005775 ORTHO05D000023 2.1e-102 377.1 506 55.9
Sabra16G0115500 Salix brachista HOM05D005775 ORTHO05D000023 4.0e-101 372.9 436 61.0
DCAR_002776 Daucus carota HOM05D005775 ORTHO05D000023 1.2e-100 371.3 439 59.9
vmacro14952 Vaccinium macrocarpon HOM05D005775 ORTHO05D000023 3.4e-100 369.8 414 66.4
Medtr5g076010 Medicago truncatula HOM05D005775 ORTHO05D000023 9.8e-100 368.2 443 57.8
FAN15G0955 Fragaria x ananassa HOM05D005775 ORTHO05D000023 2.2e-99 367.1 524 53.6
Medtr2g049540 Medicago truncatula HOM05D005775 ORTHO05D000023 4.9e-99 365.9 436 57.8
THA.LOC104800814 Tarenaya hassleriana HOM05D005775 ORTHO05D000023 4.9e-99 365.9 426 58.2
THA.LOC104817539 Tarenaya hassleriana HOM05D005775 ORTHO05D000023 8.3e-99 365.2 427 59.5
CsaV3_3G003500 Cucumis sativus L. HOM05D005775 ORTHO05D000023 5.4e-98 362.5 404 64.1
HanXRQChr12g0362741 Helianthus annuus HOM05D005775 ORTHO05D000023 5.4e-98 362.5 424 60.8
Sed0008104 Sechium edule HOM05D005775 ORTHO05D000023 7.0e-98 362.1 500 55.6
MSTRG.12583 Avicennia marina HOM05D005775 ORTHO05D000023 1.0e-96 358.2 446 58.1
ECA234G1745 Erigeron canadensis HOM05D005775 ORTHO05D000023 2.5e-95 353.6 439 59.2
Thhalv10016605m.g Eutrema salsugineum HOM05D005775 ORTHO05D000023 4.3e-95 352.8 442 56.8
Phvul.001G146400 Phaseolus vulgaris HOM05D005775 ORTHO05D000023 1.6e-94 350.9 505 51.7
Psat1g018400 Pisum sativum HOM05D005775 ORTHO05D000023 4.7e-94 349.4 509 51.1
Carub.0004s1199 Capsella rubella HOM05D005775 ORTHO05D000023 6.2e-94 349.0 424 58.3
SalBow2G0958 Salvia bowleyana HOM05D005775 ORTHO05D000023 6.2e-94 349.0 422 58.8
Ah.08g220410 Amaranthus hybridus HOM05D005775 ORTHO05D000023 1.4e-93 347.8 475 56.4
EL10Ac7g17159 Beta vulgaris HOM05D005775 ORTHO05D000023 1.8e-93 347.4 368 66.3
VMungo1383G3055 Vigna mungo HOM05D005775 ORTHO05D000023 5.2e-93 345.9 507 51.1
BraA04t17874Z Brassica rapa HOM05D005775 ORTHO05D000023 2.0e-92 344.0 424 57.3
Migut.O00883 Erythranthe guttata HOM05D005775 ORTHO05D000023 5.8e-92 342.4 391 62.9
MBI18_g06533_MAGBIO Magnolia biondii HOM05D005775 ORTHO05D000023 5.8e-92 342.4 505 52.7
BolC4t27488H Brassica oleracea HOM05D005775 ORTHO05D000023 1.3e-91 341.3 424 57.5
Sp4g13280 Schrenkiella parvula HOM05D005775 ORTHO05D000023 1.3e-91 341.3 424 56.6
A04p23470 Brassica napus HOM05D005775 ORTHO05D000023 1.7e-91 340.9 424 57.8
C04p59780 Brassica napus HOM05D005775 ORTHO05D000023 1.7e-91 340.9 424 57.8
ATR0487G016 Amborella trichopoda HOM05D005775 ORTHO05D000023 2.9e-91 340.1 414 58.7
Lsat_1_v5_gn_6_117561 Lactuca sativa HOM05D005775 ORTHO05D000023 8.3e-91 338.6 512 52.5
CARHR124250 Cardamine hirsuta HOM05D005775 ORTHO05D000023 3.2e-90 336.7 425 57.2
AT2G30780 Arabidopsis thaliana HOM05D005775 ORTHO05D000023 4.1e-90 336.3 424 56.4
arahy.Tifrunner.gnm1.ann1.9RSW73 Arachis hypogaea HOM05D005775 ORTHO05D000023 1.6e-89 334.3 518 49.0
Ca_02584_v3 Cicer arietinum L. HOM05D005775 ORTHO05D000023 2.7e-89 333.6 510 50.4
AL4G25710 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 2.3e-88 330.5 404 58.2
Aa31LG5G6080 Aethionema arabicum HOM05D005775 ORTHO05D000023 3.0e-88 330.1 429 56.9
arahy.Tifrunner.gnm1.ann1.84DKWJ Arachis hypogaea HOM05D005775 ORTHO05D000023 3.0e-88 330.1 518 48.6
AL4G25690 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 1.6e-86 324.3 401 57.6
TPR.G17547 Trifolium pratense HOM05D005775 ORTHO05D000023 1.6e-86 324.3 511 49.1
AUR62037928 Chenopodium quinoa HOM05D005775 ORTHO05D000023 2.1e-86 323.9 385 61.6
SGA_v2.0_scaffold172G39044 Striga asiatica HOM05D005775 ORTHO05D000023 2.8e-86 323.6 426 56.6
Carub.0004s3072 Capsella rubella HOM05D005775 ORTHO05D000023 3.6e-86 323.2 497 44.7
Atru.chr5.1309 Acer truncatum HOM05D005775 ORTHO05D000023 4.0e-85 319.7 475 54.9
Aa31LG1G29420 Aethionema arabicum HOM05D005775 ORTHO05D000023 8.9e-85 318.5 440 53.4
CARHR143390 Cardamine hirsuta HOM05D005775 ORTHO05D000023 5.8e-84 315.8 417 57.6
AT2G48000 Arabidopsis thaliana HOM05D005775 ORTHO05D000023 6.4e-83 312.4 501 51.3
AUR62043492 Chenopodium quinoa HOM05D005775 ORTHO05D006285 1.4e-82 311.2 370 62.2
TPR.G16641 Trifolium pratense HOM05D005775 ORTHO05D000023 4.1e-82 309.7 436 52.1
SHI15422 Sapria himalayana HOM05D005775 ORTHO05D000023 2.1e-81 307.4 387 42.9
PSO541G6072 Papaver somniferum HOM05D005775 ORTHO05D000023 1.7e-80 304.3 515 49.5
FvH4_2g24360 Fragaria vesca HOM05D005775 ORTHO05D000023 1.5e-79 301.2 525 48.4
unitig_21.g20288 Utricularia gibba HOM05D005775 ORTHO05D000023 2.1e-78 297.4 453 53.0
C04p19810 Brassica napus HOM05D005775 ORTHO05D000023 2.2e-75 287.3 427 40.5
Atru.BG.65.p Acer truncatum HOM05D005775 ORTHO05D000023 3.2e-74 283.5 350 62.6
Os05g0407900 Oryza sativa ssp. japonica HOM05D005775 ORTHO05D000023 2.8e-70 270.4 380 54.2
SEGI_28259 Sequoiadendron giganteum HOM05D005775 ORTHO05D000023 4.8e-70 269.6 427 50.6
PSO302G0009 Papaver somniferum HOM05D005775 ORTHO05D000023 8.1e-70 268.9 379 56.5
HPP92_003166 Vanilla planifolia HOM05D005775 ORTHO05D000023 1.3e-67 261.5 436 45.0
BcaB02g10341 Brassica carinata HOM05D005775 ORTHO05D000023 3.0e-64 250.4 442 44.3
ClCG00G000230 Citrullus lanatus HOM05D005775 ORTHO05D000023 6.7e-64 249.2 194 64.9
Zm00001eb287820 Zea mays HOM05D005775 ORTHO05D000023 6.7e-64 249.2 385 53.0
PSO675G7470 Papaver somniferum HOM05D005775 ORTHO05D000023 1.4e-53 214.9 316 59.5
Nn5g27607 Nelumbo nucifera HOM05D005775 ORTHO05D000023 1.2e-49 201.8 292 61.0
MD11G1295800 Malus domestica HOM05D005775 ORTHO05D000023 6.0e-49 199.5 283 61.8
Actinidia00716 Actinidia chinensis HOM05D005775 ORTHO05D000023 7.2e-42 176.0 250 45.6
MD11G1295900 Malus domestica HOM05D005775 ORTHO05D000023 8.8e-40 169.1 125 64.0
Actinidia24862 Actinidia chinensis HOM05D005775 ORTHO05D000023 2.5e-39 167.5 316 36.7
CDE10G1068 Ceratophyllum demersum HOM05D005775 ORTHO05D000023 6.7e-32 142.9 174 42.5
AL4G47600 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 5.9e-28 129.8 153 44.4
BolC4t23514H Brassica oleracea HOM05D005775 ORTHO05D000023 7.7e-28 129.4 133 48.9
AagrBONN_evm.TU.Sc2ySwM_369.313 Anthoceros agrestis HOM05D005775 ORTHO05D000023 1.3e-19 102.1 420 36.4
Pp3c1_37670 Physcomitrium patens HOM05D005775 ORTHO05D000023 8.5e-11 72.8 170 28.2
Nitab4.5_0006715g0020 Nicotiana tabacum HOM05D005775 ORTHO05D000023 1.9e-10 71.6 171 32.7
Pp3c2_3210 Physcomitrium patens HOM05D005775 ORTHO05D000023 1.2e-09 68.9 422 31.3
ClCG07G013030 Citrullus lanatus HOM05D006749 ORTHO05D008352 4.7e-09 67.0 179 29.1
Nitab4.5_0006715g0010 Nicotiana tabacum HOM05D005775 ORTHO05D000023 3.0e-08 64.3 115 37.4
Psat5g299040 Pisum sativum HOM05D006749 ORTHO05D008352 3.0e-08 64.3 144 32.6
Sabra01G0146900 Salix brachista HOM05D006749 ORTHO05D008352 3.0e-08 64.3 121 30.6
CsaV3_3G025150 Cucumis sativus L. HOM05D006749 ORTHO05D008352 6.8e-08 63.2 144 31.2
SalBow2G3072 Salvia bowleyana HOM05D006749 ORTHO05D008352 6.8e-08 63.2 98 36.7
Medtr2g102210 Medicago truncatula HOM05D006749 ORTHO05D008352 8.8e-08 62.8 120 31.7
PSO229G0046 Papaver somniferum HOM05D006749 ORTHO05D008352 8.8e-08 62.8 100 36.0
TPR.G37281 Trifolium pratense HOM05D006749 ORTHO05D008352 1.2e-07 62.4 120 32.5
PSO675G3775 Papaver somniferum HOM05D006749 ORTHO05D008352 1.5e-07 62.0 100 35.0
ATR0697G092 Amborella trichopoda HOM05D008234 ORTHO05D010422 2.0e-07 61.6 342 19.9
Lalb_Chr22g0351261 Lupinus albus HOM05D006749 ORTHO05D008352 2.0e-07 61.6 120 31.7
Mapoly0072s0009 Marchantia polymorpha HOM05D005775 ORTHO05D000023 2.6e-07 61.2 193 29.0
TWI75G1451 Tripterygium wilfordii HOM05D006749 ORTHO05D008352 2.6e-07 61.2 98 34.7
Sabra06G0190100 Salix brachista HOM05D008234 ORTHO05D010422 3.4e-07 60.8 350 34.0
MELO3C012957.2 Cucumis melo HOM05D006749 ORTHO05D008352 4.4e-07 60.5 179 27.4
Ciclev10023415m.g Citrus clementina HOM05D006749 ORTHO05D008352 7.5e-07 59.7 78 35.9
Mapoly0029s0090 Marchantia polymorpha HOM05D005862 ORTHO05D021269 7.5e-07 59.7 144 31.2
Actinidia31219 Actinidia chinensis HOM05D008234 ORTHO05D010422 9.8e-07 59.3 339 21.8
VMungo1080G0367 Vigna mungo HOM05D006749 ORTHO05D008352 9.8e-07 59.3 110 32.7
Phvul.005G171500 Phaseolus vulgaris HOM05D006749 ORTHO05D008352 1.3e-06 58.9 110 31.8
SEGI_11609 Sequoiadendron giganteum HOM05D008234 ORTHO05D010422 1.3e-06 58.9 139 26.6
Dinv14224 Davidia involucrata HOM05D008234 ORTHO05D010422 1.7e-06 58.5 341 22.0
THA.LOC104817996 Tarenaya hassleriana HOM05D006749 ORTHO05D008352 1.7e-06 58.5 142 28.2
HPP92_021740 Vanilla planifolia HOM05D006749 ORTHO05D008352 1.7e-06 58.5 122 30.3
Aa31LG8G3180 Aethionema arabicum HOM05D006749 ORTHO05D008352 2.2e-06 58.2 147 29.9
Peaxi162Scf00034g00085 Petunia axillaris HOM05D006749 ORTHO05D008352 2.2e-06 58.2 142 27.5
PGR102G0966 Punica granatum HOM05D006749 ORTHO05D008352 2.2e-06 58.2 120 33.3
Medtr5g008300 Medicago truncatula HOM05D005862 ORTHO05D007731 2.8e-06 57.8 162 28.4
Nitab4.5_0008982g0020 Nicotiana tabacum HOM05D006749 ORTHO05D008352 2.8e-06 57.8 120 29.2
Lj3g0002516 Lotus japonicus HOM05D006749 ORTHO05D008352 3.7e-06 57.4 98 31.6
Prupe.1G453000 Prunus persica HOM05D008234 ORTHO05D010422 3.7e-06 57.4 336 23.8
PGSC0003DMG400031380 Solanum tuberosum HOM05D006749 ORTHO05D008352 4.8e-06 57.0 120 29.2
Nitab4.5_0002438g0020 Nicotiana tabacum HOM05D006749 ORTHO05D008352 6.3e-06 56.6 120 29.2
SGA_v2.0_scaffold44G16880 Striga asiatica HOM05D005862 ORTHO05D007731 6.3e-06 56.6 104 33.7
TWI60G0141 Tripterygium wilfordii HOM05D005862 ORTHO05D007731 6.3e-06 56.6 98 35.7
Potri.006G243000 Populus trichocarpa HOM05D008234 ORTHO05D010422 8.3e-06 56.2 126 31.7


User provided reference genes

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