Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 2.2e-148 528.9 259 100.0
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 1.4e-126 456.4 254 89.0
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 9.5e-123 443.7 257 83.7
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 3.4e-120 435.3 257 81.3
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 4.4e-120 434.9 259 78.4
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 7.5e-120 434.1 257 81.7
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 7.5e-120 434.1 265 81.1
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 2.2e-119 432.6 268 78.4
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 8.3e-119 430.6 259 80.3
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 1.9e-118 429.5 259 79.2
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 3.2e-118 428.7 275 77.5
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 9.2e-118 427.2 259 76.4
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 3.5e-117 425.2 258 82.6
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 3.5e-117 425.2 257 80.2
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 7.8e-117 424.1 256 80.9
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 3.0e-116 422.2 257 78.6
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 5.0e-116 421.4 259 78.0
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 6.6e-116 421.0 261 79.3
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 1.1e-115 420.2 261 78.2
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 2.5e-115 419.1 256 78.9
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 3.3e-115 418.7 257 78.6
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 1.2e-114 416.8 259 76.8
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 8.0e-114 414.1 262 78.2
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 3.1e-113 412.1 257 76.7
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 3.4e-112 408.7 259 75.3
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 3.4e-112 408.7 259 75.3
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 3.4e-112 408.7 257 75.5
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 1.3e-111 406.8 257 75.9
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.7e-111 406.4 259 75.7
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.7e-111 406.4 259 76.8
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.9e-111 404.8 259 74.5
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.1e-110 403.7 259 75.3
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.1e-110 403.7 256 77.0
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 4.1e-110 401.7 259 76.4
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 5.4e-110 401.4 257 73.9
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 7.0e-110 401.0 257 74.7
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.2e-109 400.2 263 73.8
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 2.1e-109 399.4 256 75.0
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 2.1e-109 399.4 262 74.4
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 2.7e-109 399.1 259 73.7
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.7e-109 399.1 259 74.1
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.3e-108 396.7 257 73.9
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 1.3e-108 396.7 260 73.8
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 3.0e-108 395.6 259 73.7
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 3.0e-108 395.6 257 73.5
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 3.9e-108 395.2 239 79.9
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 5.1e-108 394.8 269 72.5
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 6.6e-108 394.4 266 72.9
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 8.6e-108 394.0 263 74.1
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 1.9e-107 392.9 260 74.2
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 1.9e-107 392.9 263 71.9
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 3.3e-107 392.1 256 73.0
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 9.5e-107 390.6 263 74.1
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 1.2e-106 390.2 257 73.2
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 1.6e-106 389.8 270 70.7
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.1e-106 389.4 257 73.9
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 2.1e-106 389.4 261 72.0
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 3.6e-106 388.7 257 72.4
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 3.6e-106 388.7 257 72.0
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 1.1e-105 387.1 268 71.6
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 1.4e-105 386.7 257 72.0
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 2.3e-105 386.0 258 72.5
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.1e-105 385.6 256 72.3
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 3.1e-105 385.6 257 70.8
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 4.0e-105 385.2 260 73.8
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 4.0e-105 385.2 257 71.6
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 5.2e-105 384.8 257 70.8
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 8.9e-105 384.0 256 73.0
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 8.9e-105 384.0 256 73.0
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 8.9e-105 384.0 257 72.4
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 8.9e-105 384.0 259 71.0
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 2.6e-104 382.5 260 73.5
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 2.6e-104 382.5 256 71.9
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 2.6e-104 382.5 268 70.9
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 2.6e-104 382.5 291 65.6
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 2.6e-104 382.5 257 72.0
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 3.4e-104 382.1 257 71.2
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 3.4e-104 382.1 257 69.6
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 4.4e-104 381.7 276 69.9
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 5.8e-104 381.3 257 72.0
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 1.3e-103 380.2 317 62.5
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 1.3e-103 380.2 261 72.0
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 1.7e-103 379.8 259 72.2
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 2.2e-103 379.4 253 71.1
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 8.3e-103 377.5 257 71.2
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 2.4e-102 375.9 258 71.3
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 2.4e-102 375.9 257 71.2
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 2.4e-102 375.9 257 71.2
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 9.2e-102 374.0 257 72.4
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 9.2e-102 374.0 257 70.8
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 1.2e-101 373.6 255 70.6
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 1.2e-101 373.6 258 70.9
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.6e-101 373.2 255 70.6
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 4.6e-101 371.7 257 70.8
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 2.3e-100 369.4 255 70.2
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 3.9e-100 368.6 260 70.0
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 1.1e-99 367.1 263 69.6
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 7.3e-99 364.4 257 71.2
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 1.2e-98 363.6 259 68.3
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 1.2e-98 363.6 256 66.8
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 6.2e-98 361.3 219 77.6
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 1.4e-97 360.1 257 69.3
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 6.8e-97 357.8 269 64.7
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 8.9e-97 357.5 212 78.8
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 4.4e-96 355.1 215 78.6
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 4.4e-96 355.1 257 70.4
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 9.9e-96 354.0 257 67.7
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 1.3e-95 353.6 257 66.5
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.7e-95 353.2 214 77.6
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 2.2e-95 352.8 257 66.5
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.7e-93 345.9 259 64.9
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 4.6e-93 345.1 237 70.9
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.6e-90 336.7 259 64.1
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 8.1e-90 334.3 195 81.5
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 1.1e-89 334.0 261 66.3
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 9.0e-89 330.9 216 74.1
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 2.2e-87 326.2 274 59.5
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 2.9e-87 325.9 197 78.7
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 6.4e-87 324.7 212 70.3
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 1.7e-84 316.6 244 66.4
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 5.1e-84 315.1 197 75.6
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 2.5e-83 312.8 201 78.6
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 4.3e-83 312.0 191 79.1
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 4.3e-83 312.0 182 82.4
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 1.1e-81 307.4 191 75.4
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 2.6e-80 302.8 236 62.3
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 2.4e-78 296.2 170 84.1
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 5.4e-78 295.0 231 60.6
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 1.6e-77 293.5 257 58.4
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 5.1e-76 288.5 226 65.5
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 5.1e-76 288.5 310 53.2
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 1.9e-75 286.6 256 56.6
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.6e-75 285.0 361 46.5
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 3.9e-68 262.3 260 50.0
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 9.0e-65 251.1 265 52.8
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 3.4e-64 249.2 183 67.8
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 8.7e-60 234.6 155 73.5
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.0e-56 223.4 234 50.9
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 2.5e-54 216.5 209 55.5
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 6.1e-53 211.8 179 54.2
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 6.3e-50 201.8 178 53.9
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.1e-49 199.1 125 72.8
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 1.1e-46 191.0 137 65.7
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.5e-46 188.7 127 68.5
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 3.6e-45 186.0 148 60.8
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 1.0e-39 167.9 252 36.1
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.2e-39 166.8 103 74.8
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 9.4e-38 161.4 306 35.3
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 5.7e-35 152.1 96 72.9
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.5e-32 142.5 127 53.5
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 7.7e-32 141.7 275 35.3
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.5e-30 136.7 174 44.3
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 3.2e-30 136.3 173 49.7
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 6.3e-26 122.1 99 59.6
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.8e-25 120.6 166 43.4
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-19 100.5 79 59.5
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 2.6e-19 100.1 55 90.9
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 2.6e-19 100.1 55 90.9
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.8e-18 95.9 120 45.8
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 3.1e-17 93.2 58 75.9
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 1.3e-15 87.8 55 74.5
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.3e-15 87.8 81 58.0
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 1.4e-09 67.8 65 47.7
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 5.4e-09 65.9 36 88.9
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 7.8e-08 62.0 57 54.4
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 2.3e-07 60.5 42 59.5
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 2.3e-07 60.5 42 59.5
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 3.9e-07 59.7 40 57.5


User provided reference genes

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