Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 1.4e-34 149.1 74 100.0
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.9e-28 128.6 74 83.8
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 4.8e-27 124.0 92 71.7
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.8e-26 122.1 74 78.4
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 1.2e-25 119.4 74 77.0
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 2.0e-25 118.6 74 73.0
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 2.6e-25 118.2 74 75.7
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 3.4e-25 117.9 74 77.0
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 5.8e-25 117.1 74 77.0
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 5.8e-25 117.1 74 71.6
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 5.8e-25 117.1 74 77.0
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 7.6e-25 116.7 74 71.6
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 7.6e-25 116.7 71 76.1
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 9.9e-25 116.3 74 75.7
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 1.7e-24 115.5 75 73.3
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 3.8e-24 114.4 74 78.4
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 3.8e-24 114.4 71 73.2
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 4.9e-24 114.0 74 71.6
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 6.4e-24 113.6 74 74.3
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 1.1e-23 112.8 71 71.8
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 1.4e-23 112.5 75 70.7
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 1.9e-23 112.1 74 68.9
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 1.9e-23 112.1 74 68.9
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 2.4e-23 111.7 74 73.0
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 2.4e-23 111.7 74 70.3
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 4.2e-23 110.9 74 68.9
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 4.2e-23 110.9 74 68.9
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 4.2e-23 110.9 74 68.9
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 4.2e-23 110.9 74 68.9
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 4.2e-23 110.9 74 68.9
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 4.2e-23 110.9 74 68.9
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 4.2e-23 110.9 74 67.6
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 4.2e-23 110.9 74 67.6
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 4.2e-23 110.9 74 67.6
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 4.2e-23 110.9 74 70.3
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 5.4e-23 110.5 74 68.9
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 5.4e-23 110.5 74 68.9
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 5.4e-23 110.5 74 68.9
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 7.1e-23 110.2 74 68.9
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 7.1e-23 110.2 74 68.9
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 7.1e-23 110.2 74 70.3
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 7.1e-23 110.2 74 66.2
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 9.3e-23 109.8 74 67.6
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 9.3e-23 109.8 74 66.2
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 1.2e-22 109.4 74 67.6
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.2e-22 109.4 74 70.3
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.2e-22 109.4 74 70.3
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 1.6e-22 109.0 75 66.7
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 2.1e-22 108.6 74 67.6
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 2.1e-22 108.6 74 67.6
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 2.1e-22 108.6 74 73.0
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.1e-22 108.6 74 67.6
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 2.7e-22 108.2 74 67.6
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 3.5e-22 107.8 75 68.0
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 4.6e-22 107.5 74 66.2
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 4.6e-22 107.5 74 66.2
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 6.0e-22 107.1 74 66.2
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 6.0e-22 107.1 74 67.6
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 1.3e-21 105.9 71 71.8
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 1.7e-21 105.5 74 71.6
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 1.1e-20 102.8 74 64.9
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 1.5e-20 102.4 68 67.6
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 1.5e-20 102.4 68 67.6
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 1.9e-20 102.1 75 68.0
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 1.9e-20 102.1 100 57.0
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 2.5e-20 101.7 75 66.7
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 3.3e-20 101.3 74 66.2
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 7.3e-20 100.1 66 71.2
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 9.6e-20 99.8 71 67.6
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 1.3e-19 99.4 74 66.2
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 1.3e-19 99.4 74 66.2
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.6e-19 99.0 74 66.2
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 2.1e-19 98.6 75 64.0
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 2.1e-19 98.6 75 64.0
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 2.8e-19 98.2 71 64.8
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 3.6e-19 97.8 75 64.0
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.6e-19 97.8 74 63.5
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 3.6e-19 97.8 74 60.8
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 4.8e-19 97.4 74 62.2
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 6.2e-19 97.1 70 65.7
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 8.1e-19 96.7 74 64.9
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 1.1e-18 96.3 76 65.8
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.4e-18 95.9 74 64.9
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 1.4e-18 95.9 74 64.9
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 1.5e-17 92.4 66 68.2
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 9.9e-17 89.7 91 53.8
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 1.2e-14 82.8 67 55.2
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 7.9e-14 80.1 96 49.0
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 8.7e-13 76.6 143 36.4
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 2.5e-12 75.1 150 34.0
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 7.6e-09 63.5 74 48.6
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 7.6e-09 63.5 74 44.6
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.3e-08 62.8 74 44.6
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.3e-08 62.8 74 50.0
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 2.2e-08 62.0 53 60.4
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 2.9e-08 61.6 74 45.9
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.9e-08 61.6 74 47.3
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 2.9e-08 61.6 51 58.8
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 2.9e-08 61.6 53 56.6
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 2.9e-08 61.6 53 56.6
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 6.5e-08 60.5 53 58.5
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 6.5e-08 60.5 53 56.6
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 6.5e-08 60.5 53 52.8
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 8.4e-08 60.1 48 66.7
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 8.4e-08 60.1 51 52.9
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 8.4e-08 60.1 74 48.6
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 8.4e-08 60.1 51 56.9
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 8.4e-08 60.1 51 56.9
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.1e-07 59.7 74 47.3
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 1.4e-07 59.3 74 45.9
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 1.9e-07 58.9 36 77.8
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.9e-07 58.9 74 45.9
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.9e-07 58.9 72 45.8
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 1.9e-07 58.9 72 45.8
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 2.5e-07 58.5 74 44.6
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 3.2e-07 58.2 74 44.6
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 4.2e-07 57.8 53 54.7
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 4.2e-07 57.8 53 54.7
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 5.5e-07 57.4 53 52.8
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 7.1e-07 57.0 53 52.8
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 7.1e-07 57.0 53 54.7
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 9.3e-07 56.6 53 54.7
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 9.3e-07 56.6 74 45.9
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 9.3e-07 56.6 53 54.7
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.2e-06 56.2 51 54.9
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 1.2e-06 56.2 53 50.9
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 1.6e-06 55.8 53 49.1
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 2.1e-06 55.5 53 52.8
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 2.1e-06 55.5 53 52.8
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 2.1e-06 55.5 71 43.7
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 2.1e-06 55.5 53 52.8
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 2.1e-06 55.5 53 52.8
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 3.5e-06 54.7 53 50.9
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 6.0e-06 53.9 51 52.9
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 6.0e-06 53.9 54 48.1


User provided reference genes

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