Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 4.0e-151 538.1 279 100.0
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 1.7e-125 453.0 297 82.5
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 7.8e-115 417.5 275 79.6
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 3.8e-109 398.7 245 84.1
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 3.5e-99 365.5 287 70.7
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 6.7e-98 361.3 234 79.1
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 8.7e-98 360.9 225 79.6
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 1.1e-97 360.5 279 69.5
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 5.6e-97 358.2 235 77.9
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 7.4e-97 357.8 277 70.0
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 9.6e-97 357.5 219 82.2
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 3.7e-96 355.5 231 77.5
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 8.1e-96 354.4 275 69.8
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 1.4e-95 353.6 286 67.5
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 2.4e-95 352.8 275 68.0
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 4.0e-95 352.1 275 70.2
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 4.0e-95 352.1 275 69.5
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 6.9e-95 351.3 226 79.2
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 1.2e-94 350.5 208 83.7
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 1.5e-94 350.1 217 80.2
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 2.0e-94 349.7 234 76.5
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 4.5e-94 348.6 216 81.0
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 4.5e-94 348.6 279 68.8
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 5.8e-94 348.2 218 78.9
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 1.0e-93 347.4 217 79.7
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.0e-93 347.4 275 68.0
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 1.3e-93 347.1 280 68.6
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 2.2e-93 346.3 234 73.9
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 3.8e-93 345.5 280 69.3
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 4.9e-93 345.1 217 79.7
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 1.4e-92 343.6 248 72.6
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 1.9e-92 343.2 216 78.7
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 1.9e-92 343.2 217 79.3
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 2.5e-92 342.8 256 71.5
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 2.5e-92 342.8 219 79.0
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.5e-92 342.8 215 79.5
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 3.2e-92 342.4 270 67.0
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 3.2e-92 342.4 281 68.3
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 3.2e-92 342.4 277 66.8
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 5.5e-92 341.7 275 67.3
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 7.1e-92 341.3 217 78.8
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 7.1e-92 341.3 215 79.1
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 1.2e-91 340.5 226 75.7
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 1.6e-91 340.1 257 68.9
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 1.6e-91 340.1 281 69.0
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 1.6e-91 340.1 217 78.3
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 2.1e-91 339.7 289 65.1
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 2.7e-91 339.3 245 73.1
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 4.6e-91 338.6 257 70.8
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 6.0e-91 338.2 215 77.7
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 7.9e-91 337.8 251 71.7
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 7.9e-91 337.8 218 75.2
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 7.9e-91 337.8 226 75.7
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 7.9e-91 337.8 217 77.9
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 1.0e-90 337.4 278 68.7
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.3e-90 337.0 276 65.9
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.3e-90 337.0 233 72.1
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 1.8e-90 336.7 272 66.5
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 2.3e-90 336.3 226 74.3
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 2.3e-90 336.3 217 77.4
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 3.9e-90 335.5 279 64.5
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 5.1e-90 335.1 239 71.5
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 6.7e-90 334.7 216 76.4
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 6.7e-90 334.7 256 69.1
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 1.1e-89 334.0 227 74.0
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 1.9e-89 333.2 216 75.9
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 1.9e-89 333.2 271 66.8
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 5.7e-89 331.6 286 64.7
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 5.7e-89 331.6 221 73.3
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 2.8e-88 329.3 249 68.3
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 2.8e-88 329.3 206 82.0
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 3.7e-88 328.9 249 68.3
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 3.7e-88 328.9 221 72.9
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 6.3e-88 328.2 202 80.7
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 1.5e-86 323.6 214 77.6
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 1.5e-86 323.6 214 77.6
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 3.4e-86 322.4 214 74.3
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 5.9e-86 321.6 217 76.0
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 5.9e-86 321.6 209 76.6
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 7.6e-86 321.2 220 75.5
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 1.3e-85 320.5 215 76.3
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 1.3e-85 320.5 206 75.2
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 1.3e-85 320.5 271 65.3
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 2.2e-85 319.7 214 76.2
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 2.2e-85 319.7 215 74.0
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 5.0e-85 318.5 214 76.2
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 5.0e-85 318.5 225 70.7
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.9e-84 316.6 211 73.9
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 2.5e-84 316.2 268 65.7
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 4.2e-84 315.5 187 80.7
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 1.2e-83 313.9 278 64.0
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 1.2e-83 313.9 276 63.8
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 1.2e-83 313.9 261 65.5
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 1.6e-83 313.5 214 75.2
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 2.1e-83 313.2 203 77.8
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 4.6e-83 312.0 210 75.2
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 1.0e-82 310.8 214 74.3
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 1.0e-82 310.8 178 84.8
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 3.9e-82 308.9 207 73.9
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 5.1e-82 308.5 211 75.8
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 2.5e-81 306.2 268 63.4
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.6e-80 303.5 232 67.2
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 4.1e-79 298.9 280 59.6
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 9.1e-79 297.7 245 62.0
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 2.0e-78 296.6 211 70.6
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 1.4e-76 290.4 190 76.8
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 8.8e-74 281.2 217 65.0
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 2.0e-73 280.0 212 64.2
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 4.7e-67 258.8 204 67.2
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 6.1e-67 258.5 185 68.1
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 3.8e-61 239.2 174 64.9
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 1.5e-57 227.3 179 60.9
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 2.4e-47 193.4 132 71.2
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 9.1e-47 191.4 113 83.2
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 5.0e-45 185.7 117 74.4
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 2.3e-42 176.8 192 46.9
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 5.4e-39 165.6 212 45.3
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 6.4e-24 115.5 171 36.8
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 4.3e-20 102.8 78 66.7
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.1e-18 98.2 75 70.7
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 4.9e-16 89.4 56 75.0
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 6.6e-13 79.0 61 63.9
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 6.8e-10 68.9 115 41.7
ATR0033G026 Amborella trichopoda HOM05D002933 ORTHO05D007742 1.1e-07 61.6 233 27.0
Mapoly0040s0096 Marchantia polymorpha HOM05D002933 ORTHO05D007742 1.1e-07 61.6 218 25.7
Rhsim12G0149400 Rhododendron simsii HOM05D002933 ORTHO05D007742 7.1e-07 58.9 171 29.2
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 1.2e-06 58.2 184 26.1
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 1.6e-06 57.8 262 24.8
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 1.6e-06 57.8 263 23.2
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 1.6e-06 57.8 175 25.7
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 2.1e-06 57.4 196 24.5
Dinv22762 Davidia involucrata HOM05D002933 ORTHO05D007742 2.7e-06 57.0 258 26.4
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 2.7e-06 57.0 186 27.4


User provided reference genes

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