Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 6.4e-164 581.3 439 100.0
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 4.7e-114 415.6 439 79.3
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 1.2e-106 391.0 490 74.1
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.6e-106 390.6 444 76.1
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.6e-106 390.6 444 75.9
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 2.4e-102 376.7 439 72.9
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 5.4e-102 375.6 440 72.7
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 7.0e-102 375.2 441 75.1
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 9.2e-102 374.8 446 76.0
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 2.0e-101 373.6 452 72.6
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 5.9e-101 372.1 444 73.4
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 7.8e-101 371.7 441 71.0
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 7.8e-101 371.7 441 71.0
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 1.3e-100 370.9 439 73.6
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 2.9e-100 369.8 274 70.4
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 2.9e-100 369.8 274 70.1
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 5.0e-100 369.0 439 77.0
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 5.0e-100 369.0 439 74.0
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 6.6e-100 368.6 274 69.3
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 1.1e-99 367.9 274 73.0
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 1.1e-99 367.9 439 71.8
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 1.5e-99 367.5 274 72.3
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.9e-99 367.1 442 74.0
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.9e-99 367.1 442 74.0
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 1.9e-99 367.1 274 70.4
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 1.9e-99 367.1 446 73.3
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 3.3e-99 366.3 437 78.7
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 3.3e-99 366.3 437 76.0
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 3.3e-99 366.3 274 71.2
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 9.5e-99 364.8 444 70.0
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 1.2e-98 364.4 445 77.1
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 1.6e-98 364.0 274 69.3
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 6.1e-98 362.1 273 72.9
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 6.1e-98 362.1 437 74.4
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 1.0e-97 361.3 439 76.1
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 1.0e-97 361.3 443 72.7
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 1.0e-97 361.3 437 74.8
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 1.4e-97 360.9 437 75.7
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 1.4e-97 360.9 437 75.3
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 1.8e-97 360.5 274 69.7
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.8e-97 360.5 281 69.0
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 8.9e-97 358.2 439 71.3
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 8.9e-97 358.2 443 73.4
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 8.9e-97 358.2 437 65.2
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 1.2e-96 357.8 274 69.0
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 1.2e-96 357.8 437 72.8
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 2.0e-96 357.1 437 70.7
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 9.8e-96 354.8 274 70.4
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 9.8e-96 354.8 454 74.7
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 9.8e-96 354.8 438 74.4
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.3e-95 354.4 442 68.8
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 1.7e-95 354.0 274 69.3
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 2.9e-95 353.2 274 71.5
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.9e-95 353.2 274 66.8
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 8.3e-95 351.7 439 70.4
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 1.9e-94 350.5 445 75.1
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 2.4e-94 350.1 274 70.1
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 3.2e-94 349.7 439 69.7
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 4.1e-94 349.4 274 67.9
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 5.4e-94 349.0 274 69.7
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 5.4e-94 349.0 441 72.1
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 9.2e-94 348.2 462 72.1
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.6e-93 347.4 443 72.2
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 2.0e-93 347.1 274 66.4
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 3.5e-93 346.3 438 73.5
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 1.0e-92 344.7 267 70.8
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.3e-92 344.4 273 65.9
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 3.0e-92 343.2 448 72.3
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 3.9e-92 342.8 437 73.2
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.5e-91 340.9 274 67.5
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 2.5e-91 340.1 285 63.9
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 2.8e-90 336.7 240 71.2
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 3.6e-90 336.3 440 69.8
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 4.7e-90 335.9 242 70.2
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 4.7e-90 335.9 242 71.9
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 1.4e-89 334.3 455 56.3
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 2.3e-89 333.6 242 69.4
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 3.1e-89 333.2 444 74.8
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 6.8e-89 332.0 268 69.0
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 1.5e-88 330.9 242 70.2
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 2.6e-88 330.1 242 69.4
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 2.6e-88 330.1 440 71.6
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 7.5e-88 328.6 274 65.0
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.3e-87 327.8 448 52.2
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 2.9e-87 326.6 271 65.3
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 2.9e-87 326.6 242 67.4
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 3.7e-87 326.2 242 67.4
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 6.4e-87 325.5 242 67.4
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 8.3e-87 325.1 273 64.5
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 8.3e-87 325.1 273 64.5
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 8.3e-87 325.1 273 64.5
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 1.4e-86 324.3 219 75.3
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 2.4e-86 323.6 242 66.9
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 5.4e-86 322.4 242 66.5
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 1.6e-85 320.9 242 66.1
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 3.9e-84 316.2 242 66.5
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 6.6e-84 315.5 242 66.5
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 8.6e-84 315.1 242 66.1
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 2.5e-83 313.5 242 66.1
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 2.5e-83 313.5 242 66.1
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 3.3e-83 313.2 251 64.5
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 3.3e-83 313.2 438 70.5
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 2.1e-82 310.5 242 65.7
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 2.8e-82 310.1 257 62.6
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 4.7e-82 309.3 266 62.8
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 1.4e-81 307.8 265 60.4
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 2.3e-81 307.0 242 64.9
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 4.0e-81 306.2 274 62.4
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 2.9e-79 300.1 242 64.0
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 5.4e-78 295.8 242 63.2
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 1.2e-77 294.7 274 64.6
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 3.5e-77 293.1 219 68.5
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 3.5e-77 293.1 446 48.9
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 1.9e-75 287.3 242 61.2
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 6.8e-73 278.9 238 61.3
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.6e-69 267.7 441 41.3
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 6.4e-63 245.7 242 49.6
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 7.9e-61 238.8 265 54.0
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 2.6e-48 197.2 100 91.0
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 4.5e-48 196.4 237 43.9
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 5.8e-48 196.1 384 61.7
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 2.7e-45 187.2 236 43.2
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 1.5e-43 181.4 244 43.9
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 2.1e-42 177.6 94 87.2
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 2.4e-41 174.1 176 57.4
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 2.5e-35 154.1 161 52.8
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 5.1e-28 129.8 87 79.3
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 3.0e-20 104.0 110 51.8
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 8.2e-18 95.9 109 49.5
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 8.2e-18 95.9 109 49.5
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 1.7e-15 88.2 51 76.5
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 8.0e-13 79.3 53 60.4
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 7.5e-11 72.8 100 43.0
ATR0693G087 Amborella trichopoda HOM05D005421 ORTHO05D026565 3.7e-10 70.5 55 76.4
Oeu029357.1 Olea europaea HOM05D005421 ORTHO05D026565 2.0e-08 64.7 53 64.2
Actinidia16837 Actinidia chinensis HOM05D032561 ORTHO05D030857 5.9e-08 63.2 55 61.8
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 5.0e-07 60.1 30 93.3
ATR0693G223 Amborella trichopoda HOM05D005421 ORTHO05D031077 3.2e-06 57.4 27 92.6
BcaB06g29163 Brassica carinata HOM05D005421 ORTHO05D031077 4.2e-06 57.0 27 92.6
CSS0031576 Camellia sinensis var. sinensis HOM05D032561 ORTHO05D030857 4.2e-06 57.0 46 71.7
CSS0038730 Camellia sinensis var. sinensis HOM05D032561 ORTHO05D030857 4.2e-06 57.0 46 71.7


User provided reference genes

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