Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 2.6e-297 1024.6 518 100.0
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 4.5e-257 891.0 519 89.4
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 9.8e-212 740.3 471 83.2
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 1.7e-211 739.6 513 77.2
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 3.4e-196 688.7 515 73.2
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 1.7e-192 676.4 515 72.8
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 3.6e-190 668.7 514 70.8
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 6.2e-190 667.9 513 71.3
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 1.2e-188 663.7 490 72.9
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 5.8e-188 661.4 513 70.4
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 3.2e-186 655.6 514 70.4
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 9.2e-186 654.1 515 68.9
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 9.2e-186 654.1 514 69.6
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.1e-185 652.9 518 68.1
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 3.9e-184 648.7 456 75.2
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.6e-182 643.3 513 69.8
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 2.8e-182 642.5 513 68.0
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 3.6e-182 642.1 513 69.8
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 8.1e-182 641.0 513 69.4
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 1.1e-181 640.6 519 66.9
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.8e-181 639.8 518 67.6
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.2e-180 637.1 517 65.8
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.2e-180 637.1 526 66.5
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 2.6e-180 636.0 512 67.8
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 1.3e-179 633.6 514 66.5
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 2.9e-179 632.5 512 67.6
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 8.4e-179 630.9 533 66.4
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 2.4e-178 629.4 529 65.4
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 4.2e-178 628.6 513 66.9
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 4.2e-178 628.6 513 66.9
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 4.2e-178 628.6 543 64.6
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 4.2e-178 628.6 514 67.5
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 7.1e-178 627.9 514 65.8
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 9.3e-178 627.5 516 67.4
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 9.3e-178 627.5 513 67.6
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.2e-177 627.1 512 66.0
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.2e-177 627.1 507 65.9
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 6.0e-177 624.8 512 67.0
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 1.7e-176 623.2 566 62.0
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 3.0e-176 622.5 515 66.6
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 5.1e-176 621.7 512 67.8
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 5.1e-176 621.7 514 66.5
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.3e-174 617.1 519 65.9
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 2.8e-174 615.9 513 66.1
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 1.1e-173 614.0 518 63.9
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 3.1e-173 612.5 513 66.5
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 4.0e-173 612.1 513 66.5
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.5e-172 610.1 513 66.1
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 1.5e-172 610.1 525 65.1
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 2.0e-172 609.8 514 64.8
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 2.0e-172 609.8 513 66.5
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 3.4e-172 609.0 534 64.2
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 4.5e-172 608.6 513 65.9
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 5.8e-172 608.2 534 63.7
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 2.9e-171 605.9 513 64.5
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 4.9e-171 605.1 518 65.6
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 4.9e-171 605.1 513 64.9
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 6.4e-171 604.7 519 64.7
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 8.4e-171 604.4 512 62.5
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.4e-170 602.8 547 63.6
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.2e-170 602.1 512 62.5
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 4.2e-170 602.1 519 64.7
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.6e-169 600.1 525 63.2
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 2.7e-169 599.4 513 64.3
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 4.6e-169 598.6 515 64.5
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 6.0e-169 598.2 513 64.1
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 2.3e-168 596.3 510 64.3
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 2.3e-168 596.3 514 63.4
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 3.0e-168 595.9 515 63.5
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.7e-168 594.7 503 62.6
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 1.3e-166 590.5 512 64.6
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.3e-166 590.5 547 62.7
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 2.1e-166 589.7 513 64.7
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 2.1e-166 589.7 513 64.5
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 1.4e-165 587.0 510 63.1
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.1e-165 585.9 507 63.3
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 5.3e-165 585.1 558 59.9
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 6.9e-165 584.7 513 63.0
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 9.0e-165 584.3 510 63.1
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 2.0e-164 583.2 510 63.3
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 4.5e-164 582.0 510 63.1
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 5.8e-164 581.6 578 58.8
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 2.2e-163 579.7 513 62.6
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 2.2e-163 579.7 520 61.9
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 2.9e-163 579.3 513 62.8
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 2.9e-163 579.3 513 62.8
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 2.9e-163 579.3 423 70.4
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 4.9e-163 578.6 513 61.8
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 3.2e-162 575.9 512 61.7
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 4.2e-162 575.5 513 62.6
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 4.2e-162 575.5 518 63.1
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 4.6e-161 572.0 510 62.7
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.0e-160 570.9 526 60.8
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 2.3e-160 569.7 512 62.3
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 3.9e-160 568.9 513 62.0
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 8.7e-160 567.8 444 68.7
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 1.1e-159 567.4 513 61.2
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 3.3e-159 565.8 516 61.4
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 9.6e-159 564.3 455 67.0
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 3.7e-158 562.4 512 62.1
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 3.7e-158 562.4 391 73.9
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 3.7e-158 562.4 514 62.5
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 1.4e-157 560.5 375 77.1
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 1.8e-157 560.1 518 61.6
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 2.4e-157 559.7 530 60.4
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 5.3e-157 558.5 513 62.2
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 5.3e-157 558.5 528 61.2
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 3.4e-156 555.8 491 62.3
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 4.9e-155 552.0 539 59.2
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 6.0e-153 545.0 513 60.2
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 1.5e-151 540.4 513 60.2
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 2.5e-151 539.7 445 67.4
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 7.4e-151 538.1 513 60.2
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 7.4e-151 538.1 535 58.1
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 1.6e-150 537.0 516 59.3
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 2.8e-150 536.2 522 59.0
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 1.1e-149 534.3 524 58.6
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.4e-149 533.9 505 59.2
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 9.0e-149 531.2 524 59.2
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 5.9e-148 528.5 479 61.6
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 5.0e-147 525.4 521 59.3
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 1.3e-142 510.8 468 60.5
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 6.3e-142 508.4 513 57.9
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 8.2e-142 508.1 509 55.8
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 3.1e-141 506.1 316 80.4
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 4.1e-141 505.8 312 80.1
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 1.0e-139 501.1 550 52.9
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 3.8e-131 472.6 375 64.3
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 1.4e-130 470.7 506 53.6
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.5e-127 460.7 486 54.7
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.3e-127 459.5 384 64.1
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 3.1e-125 453.0 375 62.4
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 2.0e-124 450.3 380 62.9
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 5.0e-123 445.7 599 48.7
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.5e-122 444.1 479 55.7
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 4.5e-116 422.5 514 51.6
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 1.9e-114 417.2 447 51.7
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.2e-114 416.0 493 51.9
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.7e-113 412.5 397 57.2
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.1e-109 399.8 483 51.8
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.3e-98 363.2 334 59.9
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 3.3e-98 363.2 426 50.9
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 1.4e-96 357.8 397 49.6
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 1.2e-92 344.7 382 49.7
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 3.3e-82 310.1 164 93.3
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 8.4e-70 268.9 304 49.7
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.1e-58 231.9 517 37.1
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 9.0e-48 195.7 422 35.1
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 4.5e-39 166.8 256 44.5
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.1e-37 162.2 206 50.0
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 7.1e-37 159.5 120 69.2
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.6e-28 131.7 81 77.8
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 2.2e-25 121.3 147 50.3
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 2.0e-23 114.8 194 43.8
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.5e-23 113.6 213 38.5
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 1.0e-19 102.4 206 40.8
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 2.0e-18 98.2 128 48.4
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 4.4e-18 97.1 126 47.6
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 6.3e-09 66.6 187 35.3
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 1.0e-06 59.3 237 23.6


User provided reference genes

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