Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 9.4e-161 570.1 279 100.0
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 3.2e-116 422.2 326 67.5
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 3.2e-100 369.0 326 61.0
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 6.0e-99 364.8 326 60.7
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 1.3e-98 363.6 316 61.7
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 3.3e-97 359.0 315 59.7
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 4.3e-97 358.6 323 59.8
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 4.3e-97 358.6 316 58.5
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 4.8e-96 355.1 316 60.1
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 3.1e-95 352.4 348 56.0
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 3.1e-95 352.4 321 59.8
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 4.0e-95 352.1 326 58.6
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 2.6e-94 349.4 319 60.8
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.2e-93 346.3 319 59.6
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 4.9e-93 345.1 316 57.9
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 6.5e-93 344.7 331 58.6
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 1.4e-92 343.6 303 60.4
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.4e-92 343.6 331 58.3
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.9e-92 343.2 315 57.5
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 5.5e-92 341.7 315 57.1
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 9.3e-92 340.9 324 57.4
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 1.6e-91 340.1 321 55.1
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.1e-91 339.7 315 56.8
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 3.5e-91 339.0 331 55.0
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 3.5e-91 339.0 319 55.8
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 6.0e-91 338.2 316 57.3
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 7.9e-91 337.8 318 57.5
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 7.9e-91 337.8 317 55.2
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.0e-90 337.4 330 57.0
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 5.1e-90 335.1 323 57.0
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 1.9e-89 333.2 322 54.3
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 9.6e-89 330.9 279 60.9
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 1.3e-88 330.5 322 55.9
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 1.3e-88 330.5 327 56.3
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 2.8e-88 329.3 326 54.3
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 4.8e-88 328.6 322 54.3
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 1.4e-87 327.0 316 55.4
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 1.4e-87 327.0 311 55.9
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 2.4e-87 326.2 313 55.6
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 4.1e-87 325.5 313 55.6
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 4.1e-87 325.5 330 53.0
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 9.0e-87 324.3 318 54.4
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 1.2e-86 323.9 303 57.4
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 1.5e-86 323.6 314 55.4
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 2.0e-86 323.2 325 53.2
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 4.5e-86 322.0 325 53.8
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 7.6e-86 321.2 322 53.4
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.0e-85 320.9 313 54.6
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.0e-85 320.9 313 54.6
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.0e-85 320.9 313 54.6
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.0e-85 320.9 313 54.6
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 1.0e-85 320.9 311 55.3
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 1.0e-85 320.9 320 53.4
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 1.3e-85 320.5 298 55.7
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 1.3e-85 320.5 321 53.0
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 1.7e-85 320.1 331 52.6
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 1.7e-85 320.1 329 52.9
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 3.8e-85 318.9 317 55.8
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 5.0e-85 318.5 333 52.9
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 5.0e-85 318.5 333 52.9
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 6.5e-85 318.2 313 54.6
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 3.2e-84 315.8 289 57.1
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 4.2e-84 315.5 305 54.4
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 4.2e-84 315.5 298 58.1
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 5.5e-84 315.1 320 53.1
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 5.5e-84 315.1 322 54.0
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 5.5e-84 315.1 313 54.0
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 7.2e-84 314.7 315 54.9
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 6.1e-83 311.6 287 55.7
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 1.3e-82 310.5 302 55.6
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 1.3e-82 310.5 401 45.9
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 1.8e-82 310.1 322 53.4
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 6.7e-82 308.1 313 53.4
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 6.7e-82 308.1 292 55.1
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 8.7e-82 307.8 269 59.5
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 6.3e-80 301.6 313 54.3
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 2.0e-78 296.6 317 52.4
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 1.7e-77 293.5 327 52.9
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 2.2e-77 293.1 321 49.5
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 3.6e-75 285.8 310 49.4
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 6.1e-75 285.0 247 63.2
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 2.6e-73 279.6 313 49.8
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 1.3e-69 267.3 278 52.9
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 9.4e-68 261.2 247 57.9
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.5e-65 253.8 272 49.3
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 1.8e-63 246.9 264 51.9
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 7.7e-62 241.5 303 45.9
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 1.9e-60 236.9 249 55.0
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 2.5e-60 236.5 299 48.2
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 2.1e-59 233.4 280 47.9
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 1.2e-57 227.6 304 45.1
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.2e-56 223.4 197 62.4
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.8e-55 220.3 189 63.0
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 4.1e-55 219.2 155 70.3
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 7.2e-52 208.4 214 55.1
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 9.4e-52 208.0 110 86.4
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 9.4e-52 208.0 110 86.4
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 1.2e-51 207.6 219 50.7
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 2.7e-51 206.5 152 59.2
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 4.4e-49 199.1 302 39.1
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 5.7e-49 198.7 240 50.4
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 8.3e-48 194.9 223 51.6
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 1.7e-45 187.2 398 33.9
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.1e-39 166.4 185 49.7
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 3.1e-39 166.4 116 68.1
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.6e-38 164.1 184 48.9
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.7e-38 163.3 195 46.7
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.5e-38 162.9 184 49.5
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.9e-38 162.2 184 48.9
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 5.9e-38 162.2 184 48.9
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 4.7e-35 152.5 115 63.5
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 4.7e-35 152.5 183 48.1
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.6e-33 146.7 115 64.3
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.4e-33 146.4 125 61.6
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.7e-33 145.6 115 64.3
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 2.2e-32 143.7 291 36.1
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 5.4e-31 139.0 298 34.9
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.6e-30 136.0 184 44.0
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 5.9e-30 135.6 112 62.5
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 1.6e-27 127.5 102 62.7
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.3e-26 123.6 185 41.1
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 9.8e-25 118.2 196 39.3
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 2.3e-21 107.1 78 62.8
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 4.3e-20 102.8 79 60.8
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 4.3e-20 102.8 79 60.8
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 1.6e-19 100.9 168 35.7
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 3.1e-18 96.7 182 37.4
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 3.4e-17 93.2 295 30.2
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 6.4e-16 89.0 254 29.9
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 9.2e-15 85.1 53 73.6


User provided reference genes

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