Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1788.5 887 100.0
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1452.6 887 83.2
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1323.9 891 75.6
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1322.8 891 75.5
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1321.2 890 75.4
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 1135.9 898 66.3
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 1125.5 898 64.0
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1100.9 898 63.9
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1094.7 894 63.3
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 1093.6 910 63.3
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 1088.6 895 63.7
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 1083.9 893 63.2
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1076.2 900 63.3
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 6.1e-312 1073.9 899 62.4
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 1.9e-308 1062.4 959 59.5
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 5.6e-308 1060.8 900 62.6
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 8.1e-307 1057.0 899 62.4
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 9.0e-306 1053.5 897 61.8
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 9.3e-303 1043.5 904 60.8
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 7.8e-302 1040.4 895 61.1
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 1.3e-301 1039.6 894 63.0
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 3.3e-300 1035.0 899 60.3
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 9.6e-300 1033.5 893 62.6
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 1.2e-297 1026.5 899 59.8
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 4.5e-297 1024.6 903 59.9
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 9.9e-297 1023.5 903 59.9
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 2.2e-296 1022.3 910 58.9
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 2.3e-293 1012.3 903 58.5
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 4.2e-287 991.5 899 59.1
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 9.3e-287 990.3 897 59.1
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 2.1e-286 989.2 899 59.0
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 7.9e-286 987.3 897 59.1
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 8.7e-285 983.8 900 58.6
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 5.6e-284 981.1 897 60.0
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 8.2e-283 977.2 893 57.9
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 3.4e-281 971.8 898 57.8
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 7.1e-279 964.1 903 57.6
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 2.1e-278 962.6 898 58.2
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 2.1e-278 962.6 903 57.1
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 4.6e-278 961.4 897 57.0
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 6.7e-277 957.6 910 57.6
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 8.7e-277 957.2 901 56.9
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 4.3e-276 954.9 885 57.9
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 4.3e-276 954.9 900 57.6
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.1e-274 950.3 900 57.3
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 1.1e-274 950.3 892 57.2
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 1.8e-274 949.5 901 57.4
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 2.0e-273 946.0 904 56.7
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 1.9e-271 939.5 907 56.1
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.8e-269 932.9 895 56.6
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 3.9e-269 931.8 900 56.0
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 5.1e-269 931.4 900 55.0
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 8.8e-269 930.6 893 54.8
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 6.3e-267 924.5 891 54.9
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 1.4e-266 923.3 897 54.2
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 9.1e-266 920.6 892 55.0
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 1.2e-265 920.2 915 55.3
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 7.7e-265 917.5 962 53.8
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 7.7e-265 917.5 897 54.0
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 5.0e-264 914.8 855 57.3
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 7.2e-263 911.0 905 54.1
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 8.8e-261 904.0 868 55.5
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 1.4e-258 896.7 906 54.0
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 3.5e-257 892.1 903 53.2
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 5.9e-257 891.3 895 54.2
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 4.2e-255 885.2 892 52.8
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 4.7e-254 881.7 912 53.8
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 5.2e-253 878.2 900 53.1
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 7.4e-252 874.4 895 53.6
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 2.8e-251 872.5 919 52.2
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 2.4e-250 869.4 880 52.7
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 5.3e-250 868.2 891 52.7
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 1.6e-249 866.7 892 52.7
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 1.7e-248 863.2 889 52.9
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 1.5e-247 860.1 903 52.0
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 9.4e-247 857.4 900 52.4
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 1.2e-246 857.1 954 50.5
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 3.0e-245 852.4 892 52.8
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 3.4e-244 849.0 897 52.5
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 7.5e-244 847.8 898 51.4
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 2.2e-243 846.3 881 53.9
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 2.2e-243 846.3 881 53.9
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 1.1e-242 844.0 895 52.2
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 1.1e-242 844.0 915 51.8
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 2.4e-242 842.8 888 51.9
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 2.0e-241 839.7 899 51.6
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 2.0e-241 839.7 894 51.5
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 1.0e-240 837.4 877 52.5
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 8.0e-238 827.8 897 51.1
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 5.2e-237 825.1 879 50.9
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 6.8e-237 824.7 897 51.3
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 7.5e-236 821.2 898 50.7
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 9.8e-236 820.8 898 50.6
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 2.2e-235 819.7 897 51.1
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 4.8e-235 818.5 895 50.6
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 1.4e-234 817.0 782 54.9
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 1.7e-232 810.1 886 51.8
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 2.1e-230 803.1 905 49.6
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 3.7e-219 765.8 592 66.6
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 5.0e-216 755.4 897 47.3
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 1.0e-208 731.1 533 69.8
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 5.8e-188 662.1 904 43.9
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 2.1e-174 617.1 492 64.8
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 1.9e-170 604.0 542 58.3
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 1.2e-164 584.7 1115 36.4
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 4.5e-164 582.8 844 43.7
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.0e-136 491.9 597 46.9
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.0e-135 487.6 660 43.6
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.3e-128 464.2 591 44.3
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 3.1e-125 453.8 834 36.0
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 3.6e-121 440.3 541 46.8
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 1.6e-113 414.8 919 32.4
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 2.3e-112 411.0 826 34.0
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 5.0e-107 393.3 718 33.7
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 3.2e-101 374.0 851 33.4
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 5.6e-98 363.2 356 55.6
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 2.0e-87 328.2 810 31.7
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 1.5e-82 312.0 428 45.3
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 1.9e-69 268.5 904 25.2
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 9.3e-69 266.2 368 42.7
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 8.1e-65 253.1 244 54.5
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 1.3e-41 176.0 136 62.5
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 1.6e-41 175.6 164 54.9
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 4.5e-39 167.5 163 54.0
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 4.2e-37 161.0 164 50.6
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.5e-34 152.5 253 36.4
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 2.0e-31 142.1 128 59.4
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 5.0e-30 137.5 139 50.4
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 5.5e-29 134.0 224 40.2
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 2.9e-22 111.7 151 47.7
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 8.5e-22 110.2 151 43.0
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 4.0e-19 101.3 139 41.0
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 3.7e-17 94.7 157 38.9
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 3.1e-16 91.7 104 52.9
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 1.5e-13 82.8 142 43.0
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 3.6e-12 78.2 99 43.4
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 2.0e-10 72.4 73 52.1
Psat3g007520 Pisum sativum HOM05D000467 ORTHO05D000379 2.7e-07 62.0 68 47.1
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 6.5e-06 57.4 78 41.0


User provided reference genes

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