Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 4.3e-189 664.5 325 100.0
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 1.5e-77 293.9 321 53.3
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 3.4e-77 292.7 322 52.2
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 2.9e-76 289.7 347 50.1
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 6.4e-76 288.5 322 51.9
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 1.6e-74 283.9 322 51.2
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 4.6e-74 282.3 322 50.9
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 4.6e-74 282.3 322 50.9
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 6.0e-74 282.0 322 49.7
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 2.3e-73 280.0 321 49.2
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 3.0e-73 279.6 322 48.8
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 8.6e-73 278.1 322 48.8
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.1e-72 277.7 321 49.2
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 1.1e-72 277.7 321 49.2
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 1.1e-72 277.7 322 49.4
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 1.1e-72 277.7 322 49.1
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 1.1e-72 277.7 321 49.2
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 1.1e-72 277.7 322 49.1
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 2.5e-72 276.6 321 48.9
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 2.5e-72 276.6 320 48.1
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 4.3e-72 275.8 321 48.6
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 7.3e-72 275.0 321 48.9
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 1.2e-71 274.2 321 49.5
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 1.2e-71 274.2 321 49.5
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 1.6e-71 273.9 322 48.8
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 6.2e-71 271.9 316 49.4
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 6.2e-71 271.9 322 47.8
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 6.2e-71 271.9 322 47.5
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 8.1e-71 271.6 321 48.3
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.1e-70 271.2 322 47.8
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 1.1e-70 271.2 322 48.8
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 1.4e-70 270.8 316 49.1
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 1.4e-70 270.8 322 47.8
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.8e-70 270.4 320 47.2
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 1.8e-70 270.4 322 49.1
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 1.8e-70 270.4 321 48.0
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 2.4e-70 270.0 322 47.2
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 3.1e-70 269.6 322 47.5
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 3.1e-70 269.6 316 49.1
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 4.0e-70 269.2 321 46.7
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 1.2e-69 267.7 320 48.1
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 1.2e-69 267.7 319 45.8
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 1.2e-69 267.7 316 48.4
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 1.2e-69 267.7 322 47.5
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 1.2e-69 267.7 321 48.6
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 1.5e-69 267.3 322 47.8
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 2.0e-69 266.9 322 46.9
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 4.4e-69 265.8 322 46.0
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 5.8e-69 265.4 320 48.1
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 7.6e-69 265.0 319 47.6
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 9.9e-69 264.6 319 47.6
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 1.7e-68 263.8 322 49.1
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 1.7e-68 263.8 316 47.8
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 2.2e-68 263.5 321 46.4
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 3.8e-68 262.7 319 47.3
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 3.8e-68 262.7 322 47.2
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 4.9e-68 262.3 322 45.7
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 4.9e-68 262.3 322 46.9
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 8.4e-68 261.5 322 48.1
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 1.1e-67 261.2 321 45.5
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 1.1e-67 261.2 320 46.2
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 2.4e-67 260.0 315 47.0
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 3.2e-67 259.6 319 46.4
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 3.2e-67 259.6 301 50.8
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 4.2e-67 259.2 319 45.8
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 4.2e-67 259.2 315 45.7
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 4.2e-67 259.2 322 46.3
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 5.4e-67 258.8 322 45.3
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 5.4e-67 258.8 316 47.2
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 5.4e-67 258.8 315 45.7
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 9.3e-67 258.1 315 45.7
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 1.2e-66 257.7 319 46.1
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 1.2e-66 257.7 319 46.1
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 1.6e-66 257.3 316 46.2
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 1.6e-66 257.3 319 46.7
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 2.1e-66 256.9 315 46.0
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 2.7e-66 256.5 321 47.0
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 3.5e-66 256.1 321 46.4
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 1.0e-65 254.6 322 46.0
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 1.0e-65 254.6 319 45.5
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 1.3e-65 254.2 322 45.7
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 1.3e-65 254.2 315 45.7
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 1.7e-65 253.8 319 47.3
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 1.7e-65 253.8 319 47.3
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 1.7e-65 253.8 322 46.6
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 2.3e-65 253.4 321 45.5
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 5.1e-65 252.3 368 41.8
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 6.6e-65 251.9 315 46.7
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 6.6e-65 251.9 303 48.8
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 6.6e-65 251.9 322 46.3
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 1.1e-64 251.1 338 44.7
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 2.5e-64 250.0 322 45.7
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 2.5e-64 250.0 316 45.9
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 5.6e-64 248.8 322 45.3
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 7.3e-64 248.4 322 45.7
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 1.6e-63 247.3 320 45.3
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 2.1e-63 246.9 320 45.3
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 2.1e-63 246.9 315 44.8
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 2.8e-63 246.5 320 45.3
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 2.8e-63 246.5 322 44.7
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 2.8e-63 246.5 322 44.7
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 6.2e-63 245.4 320 45.0
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 8.1e-63 245.0 320 44.7
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 8.1e-63 245.0 323 45.5
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 1.1e-62 244.6 322 44.1
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 1.1e-62 244.6 316 45.6
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 1.8e-62 243.8 322 43.8
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 2.4e-62 243.4 320 44.7
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 2.4e-62 243.4 322 44.4
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 2.4e-62 243.4 320 44.7
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 2.4e-62 243.4 321 43.3
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 5.3e-62 242.3 322 44.1
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 5.3e-62 242.3 322 44.1
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 6.9e-62 241.9 320 44.7
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 1.5e-61 240.7 321 45.5
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 4.5e-61 239.2 320 44.1
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 4.5e-61 239.2 322 44.1
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 9.9e-61 238.0 316 42.4
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 2.9e-60 236.5 210 60.0
Lalb_Chr00c24g0407441 Lupinus albus HOM05D003706 ORTHO05D004487 4.9e-60 235.7 300 45.3
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 4.2e-59 232.6 209 57.4
Cpa.g.sc89.37 Carica papaya HOM05D003706 ORTHO05D004487 1.3e-57 227.6 213 56.3
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 1.8e-57 227.3 203 59.6
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 1.8e-57 227.3 205 59.0
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 2.3e-57 226.9 322 42.2
CsaV3_3G002450 Cucumis sativus L. HOM05D003706 ORTHO05D004487 3.9e-57 226.1 300 44.7
Sc22g0001060 Simmondsia chinensis HOM05D003706 ORTHO05D004487 3.9e-57 226.1 306 43.8
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 6.7e-57 225.3 319 41.4
TPR.G4685 Trifolium pratense HOM05D003706 ORTHO05D004487 8.7e-57 224.9 301 42.9
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 1.1e-56 224.6 209 56.0
Nn1g00853 Nelumbo nucifera HOM05D003706 ORTHO05D004487 1.5e-56 224.2 303 44.6
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 3.3e-56 223.0 334 41.9
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 1.6e-55 220.7 304 43.1
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.6e-55 220.7 210 56.7
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 1.4e-54 217.6 209 56.0
VMungo0251G2614 Vigna mungo HOM05D003706 ORTHO05D006202 5.3e-54 215.7 317 42.3
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 2.6e-53 213.4 210 56.2
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 7.6e-53 211.8 315 40.3
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 4.9e-52 209.1 346 39.3
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 1.9e-51 207.2 315 40.0
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 1.9e-51 207.2 315 39.4
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 1.2e-50 204.5 315 38.7
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 1.6e-50 204.1 315 38.1
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 2.1e-50 203.8 323 37.8
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 1.8e-49 200.7 210 53.8
SMO364G0877 Selaginella moellendorffii HOM05D003706 ORTHO05D004487 2.1e-47 193.7 328 38.4
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 8.1e-47 191.8 183 55.2
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 1.4e-46 191.0 315 37.8
Ciclev10024619m.g Citrus clementina HOM05D003706 ORTHO05D004487 2.9e-44 183.3 273 41.4
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 8.4e-44 181.8 203 48.3
arahy.Tifrunner.gnm1.ann1.FUBR3I Arachis hypogaea HOM05D003706 ORTHO05D004487 1.5e-40 171.0 216 44.4
CBR_g30854 Chara braunii HOM05D003706 ORTHO05D004487 7.4e-40 168.7 314 36.6
BcaC06g33562 Brassica carinata HOM05D003706 ORTHO05D004487 7.6e-37 158.7 164 53.0
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 7.6e-37 158.7 315 33.3
Cc11_g04870 Coffea canephora HOM05D003706 ORTHO05D004487 2.2e-36 157.1 273 37.7
Actinidia02181 Actinidia chinensis HOM05D003706 ORTHO05D004487 4.6e-34 149.4 83 85.5
SHI07667 Sapria himalayana HOM05D003706 ORTHO05D004487 6.7e-33 145.6 286 33.9
BcaC06g33564 Brassica carinata HOM05D003706 ORTHO05D004487 8.2e-31 138.7 184 46.7
MCO01G147 Micromonas commoda HOM05D003706 ORTHO05D004487 2.0e-29 134.0 314 29.0
TWI15G0745 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 6.5e-28 129.0 79 74.7
Cre03.g194250 Chlamydomonas reinhardtii HOM05D003706 ORTHO05D004487 5.5e-27 125.9 318 28.0
Sopen08g026630 Solanum pennellii HOM05D003706 ORTHO05D004487 7.2e-27 125.6 73 78.1
arahy.Tifrunner.gnm1.ann1.77EYCF Arachis hypogaea HOM05D003706 ORTHO05D004487 6.9e-22 109.0 69 68.1
Cc01_g05720 Coffea canephora HOM05D003706 ORTHO05D004487 2.9e-20 103.6 72 70.8
MBI04_g33725_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 1.4e-17 94.7 48 83.3
Actinidia02180 Actinidia chinensis HOM05D003706 ORTHO05D004487 2.6e-16 90.5 143 40.6
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 2.8e-15 87.0 93 53.8
Zm00001eb389020 Zea mays HOM05D003706 ORTHO05D004487 2.8e-15 87.0 93 53.8
Sopen08g026640 Solanum pennellii HOM05D003706 ORTHO05D004487 6.3e-15 85.9 143 38.5
C07p48160 Brassica napus HOM05D003706 ORTHO05D004487 4.1e-14 83.2 198 35.4
Zm00001eb389030 Zea mays HOM05D003706 ORTHO05D004487 4.1e-14 83.2 87 54.0
Zm00001eb296140 Zea mays HOM05D003706 ORTHO05D004487 2.6e-13 80.5 83 56.6
Os04g0667500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 7.7e-13 79.0 53 62.3
PRCOL_00002923 Prasinoderma coloniale HOM05D003706 ORTHO05D004487 1.3e-12 78.2 316 25.9
RcHm_v2.0_Chr7g0214021 Rosa chinensis HOM05D003706 ORTHO05D004487 2.9e-12 77.0 58 65.5
TAR375G0973 Trochodendron aralioides HOM05D003706 ORTHO05D004487 3.8e-12 76.6 44 79.5
Cc00_g03590 Coffea canephora HOM05D003706 ORTHO05D004487 4.2e-11 73.2 132 36.4
arahy.Tifrunner.gnm1.ann1.CH87W6 Arachis hypogaea HOM05D003706 ORTHO05D004487 3.0e-09 67.0 164 29.9
Os04g0546400 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 8.2e-07 58.9 50 56.0
Rhsim12G0175400 Rhododendron simsii HOM05D000789 ORTHO05D000897 4.1e-06 56.6 33 75.8


User provided reference genes

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