Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 1.8e-57 225.7 118 100.0
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 6.2e-53 210.7 140 83.6
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 3.7e-42 174.9 140 68.6
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 8.3e-42 173.7 139 66.9
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 1.9e-41 172.6 140 66.4
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 1.0e-39 166.8 140 65.0
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 1.1e-38 163.3 144 63.9
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 1.9e-38 162.5 137 65.0
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 4.3e-38 161.4 148 60.8
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 7.3e-38 160.6 133 66.2
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 2.1e-37 159.1 137 62.0
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 2.1e-37 159.1 137 62.0
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 2.1e-37 159.1 137 62.0
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 4.7e-37 157.9 133 63.9
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 4.7e-37 157.9 133 63.2
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 6.2e-37 157.5 128 66.4
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 6.2e-37 157.5 133 63.9
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 1.1e-36 156.8 128 63.3
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.4e-36 156.4 133 61.7
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.8e-36 156.0 133 63.2
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 1.8e-36 156.0 127 64.6
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 3.1e-36 155.2 136 59.6
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 4.0e-36 154.8 132 61.4
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 4.0e-36 154.8 140 60.0
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 5.2e-36 154.5 132 60.6
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 5.2e-36 154.5 132 60.6
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 5.2e-36 154.5 132 60.6
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 5.2e-36 154.5 132 60.6
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 5.2e-36 154.5 135 60.0
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 5.2e-36 154.5 135 61.5
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 5.2e-36 154.5 133 61.7
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 6.8e-36 154.1 142 62.0
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 8.9e-36 153.7 140 57.1
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 8.9e-36 153.7 133 62.4
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 8.9e-36 153.7 133 61.7
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 1.2e-35 153.3 128 63.3
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 1.5e-35 152.9 140 59.3
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 2.0e-35 152.5 136 60.3
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 2.6e-35 152.1 140 56.4
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 2.6e-35 152.1 127 63.0
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 3.4e-35 151.8 134 59.7
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 3.4e-35 151.8 132 59.1
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 4.4e-35 151.4 132 59.1
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 5.8e-35 151.0 133 61.7
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 7.6e-35 150.6 133 63.2
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 7.6e-35 150.6 135 62.2
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 9.9e-35 150.2 132 59.1
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 9.9e-35 150.2 127 63.0
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 1.3e-34 149.8 132 58.3
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 1.3e-34 149.8 132 59.1
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 1.3e-34 149.8 140 55.7
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 1.7e-34 149.4 142 54.9
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.2e-34 149.1 133 57.9
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.2e-34 149.1 133 57.9
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.2e-34 149.1 133 57.9
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 2.2e-34 149.1 133 57.9
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 2.9e-34 148.7 140 57.1
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 3.8e-34 148.3 147 55.1
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 3.8e-34 148.3 132 58.3
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 3.8e-34 148.3 132 58.3
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 6.4e-34 147.5 133 57.9
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 6.4e-34 147.5 134 61.9
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 6.4e-34 147.5 139 59.0
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 8.4e-34 147.1 132 57.6
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 1.1e-33 146.7 133 58.6
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 1.4e-33 146.4 128 62.5
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 3.2e-33 145.2 159 53.5
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 5.4e-33 144.4 127 62.2
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 7.1e-33 144.1 133 59.4
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 7.1e-33 144.1 133 59.4
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 7.1e-33 144.1 133 59.4
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 7.1e-33 144.1 141 55.3
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 1.2e-32 143.3 133 59.4
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 1.2e-32 143.3 133 59.4
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 1.6e-32 142.9 133 58.6
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 1.6e-32 142.9 133 58.6
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 2.1e-32 142.5 133 59.4
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 2.7e-32 142.1 123 62.6
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 2.7e-32 142.1 138 55.8
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 3.5e-32 141.7 133 57.9
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 3.5e-32 141.7 133 57.9
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 3.5e-32 141.7 133 57.9
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 4.6e-32 141.4 137 59.9
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 6.0e-32 141.0 123 61.8
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 7.8e-32 140.6 144 58.3
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 1.0e-31 140.2 133 55.6
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.0e-31 140.2 159 51.6
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 1.7e-31 139.4 127 59.8
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 1.7e-31 139.4 133 57.9
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 1.7e-31 139.4 133 54.1
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 2.3e-31 139.0 128 55.5
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 2.3e-31 139.0 129 59.7
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 2.3e-31 139.0 133 57.1
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 3.0e-31 138.7 133 56.4
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 3.9e-31 138.3 133 58.6
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 3.9e-31 138.3 128 58.6
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 6.6e-31 137.5 133 55.6
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 8.6e-31 137.1 127 55.1
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.1e-30 136.7 133 57.1
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 2.5e-30 135.6 86 75.6
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 5.6e-30 134.4 83 78.3
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 1.6e-29 132.9 123 57.7
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 3.6e-29 131.7 139 52.5
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 3.6e-29 131.7 124 54.8
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 4.7e-29 131.3 83 81.9
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 4.7e-29 131.3 120 61.7
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 4.7e-29 131.3 120 61.7
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 1.8e-28 129.4 113 67.3
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 2.4e-28 129.0 83 78.3
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 5.2e-28 127.9 83 77.1
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 2.0e-27 125.9 117 61.5
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 1.7e-26 122.9 92 68.5
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 4.9e-26 121.3 106 66.0
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 1.4e-25 119.8 83 71.1
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 1.4e-25 119.8 106 61.3
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 1.9e-25 119.4 119 55.5
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 4.2e-25 118.2 106 63.2
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 4.2e-25 118.2 114 59.6
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 7.1e-25 117.5 106 60.4
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 7.1e-25 117.5 110 59.1
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 1.3e-23 113.2 133 49.6
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 3.0e-23 112.1 102 57.8
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 3.9e-23 111.7 113 55.8
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 8.7e-23 110.5 106 58.5
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 2.5e-22 109.0 127 53.5
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 5.6e-22 107.8 64 79.7
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 6.2e-21 104.4 118 55.1
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 8.1e-21 104.0 115 49.6
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 9.0e-20 100.5 65 70.8
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 2.6e-19 99.0 109 50.5
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 4.5e-19 98.2 84 58.3
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 6.4e-18 94.4 58 82.8
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 8.4e-18 94.0 111 52.3
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 8.4e-18 94.0 58 82.8
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 1.6e-16 89.7 62 71.0
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 1.3e-15 86.7 120 46.7
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 3.1e-12 75.5 101 47.5
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 1.5e-11 73.2 114 37.7
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 6.0e-08 61.2 80 45.0
SEGI_34318 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 6.7e-07 57.8 42 64.3
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 8.7e-07 57.4 73 46.6
Cre16.g657000 Chlamydomonas reinhardtii HOM05D005002 ORTHO05D006016 3.3e-06 55.5 74 41.9
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 9.6e-06 53.9 70 41.4


User provided reference genes

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