Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 9.1e-205 716.8 404 100.0
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 1.8e-136 490.0 417 72.2
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 6.0e-132 474.9 417 68.8
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 7.8e-132 474.6 415 68.4
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 4.3e-130 468.8 417 68.6
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 9.6e-130 467.6 413 68.8
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 6.4e-126 454.9 412 66.5
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.2e-124 450.7 412 66.0
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 4.6e-124 448.7 408 66.9
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 2.3e-123 446.4 410 66.8
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.1e-123 445.3 410 66.6
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 1.1e-122 444.1 415 66.0
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 1.9e-122 443.4 416 65.9
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 9.6e-122 441.0 409 66.5
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 1.3e-121 440.7 414 66.7
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.6e-121 440.3 410 64.9
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 8.1e-121 438.0 409 66.0
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 1.4e-120 437.2 412 67.0
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.0e-119 433.3 410 64.4
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 1.1e-117 427.6 418 64.1
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.4e-117 427.2 411 64.5
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.4e-117 427.2 413 64.4
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 4.2e-117 425.6 419 62.5
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 9.3e-117 424.5 417 62.8
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 7.9e-116 421.4 422 64.0
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 1.0e-115 421.0 410 62.7
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 3.9e-115 419.1 424 63.0
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 5.1e-115 418.7 414 62.3
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 1.1e-114 417.5 417 62.6
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 5.6e-114 415.2 410 63.7
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 9.6e-114 414.5 412 63.3
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 8.1e-113 411.4 405 63.7
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 1.1e-112 411.0 413 61.5
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 1.1e-112 411.0 416 62.0
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 1.4e-112 410.6 417 61.9
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 3.1e-112 409.5 424 61.6
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 5.3e-112 408.7 408 62.5
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 9.0e-112 407.9 411 62.8
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 9.0e-112 407.9 409 61.1
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 1.5e-111 407.1 410 62.9
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 4.5e-111 405.6 419 61.6
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 2.9e-110 402.9 410 62.4
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 4.9e-110 402.1 413 61.0
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 1.1e-109 401.0 421 61.5
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 3.5e-108 396.0 413 59.8
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.0e-107 394.4 416 61.3
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.3e-107 394.0 359 66.9
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 1.8e-107 393.7 411 59.4
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 2.3e-107 393.3 424 62.0
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 5.1e-107 392.1 408 61.5
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 1.1e-106 391.0 420 61.0
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 1.9e-106 390.2 426 60.3
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 5.6e-106 388.7 408 62.0
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.1e-105 386.7 415 60.5
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 2.1e-105 386.7 411 58.2
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 2.8e-105 386.3 408 61.8
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 2.8e-105 386.3 433 60.3
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 3.7e-105 386.0 408 61.8
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 3.7e-105 386.0 359 66.3
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 3.7e-105 386.0 359 66.3
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 8.2e-105 384.8 408 61.3
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 1.4e-104 384.0 407 60.4
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.4e-104 383.3 412 59.7
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 2.0e-103 380.2 422 57.6
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 2.6e-103 379.8 340 68.2
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 2.6e-103 379.8 410 59.0
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 2.6e-103 379.8 410 58.8
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 5.8e-103 378.6 418 58.1
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 1.3e-102 377.5 427 57.1
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 1.7e-102 377.1 408 60.3
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 3.8e-102 375.9 429 58.0
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 1.4e-101 374.0 347 65.4
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 1.4e-101 374.0 418 58.9
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 2.5e-101 373.2 410 58.5
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.2e-101 372.9 419 58.5
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 4.2e-101 372.5 411 60.6
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 5.5e-101 372.1 419 58.5
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 5.5e-101 372.1 431 56.6
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 7.1e-101 371.7 403 60.3
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 1.2e-100 370.9 349 65.3
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 1.2e-100 370.9 349 65.3
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.6e-100 370.5 336 67.3
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.1e-100 370.2 420 57.6
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 2.1e-100 370.2 408 59.6
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 2.7e-100 369.8 416 59.1
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 3.5e-100 369.4 415 59.5
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 6.0e-100 368.6 414 59.4
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.3e-99 367.5 419 58.2
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 1.8e-99 367.1 436 56.9
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 5.1e-99 365.5 408 59.6
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 1.5e-98 364.0 402 57.7
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 4.3e-98 362.5 408 58.1
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 4.3e-98 362.5 413 57.9
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 4.3e-98 362.5 411 58.2
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 5.7e-98 362.1 417 59.0
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 2.2e-97 360.1 409 58.7
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.8e-97 359.8 405 58.3
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 3.7e-97 359.4 410 56.3
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.4e-96 357.5 410 57.1
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 2.4e-96 356.7 429 56.4
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 4.1e-96 355.9 429 55.2
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.6e-95 353.2 404 57.9
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 2.2e-94 350.1 335 60.6
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 1.4e-93 347.4 417 56.1
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 3.2e-93 346.3 417 55.4
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 3.2e-93 346.3 355 62.0
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 9.3e-93 344.7 342 60.2
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 4.6e-92 342.4 411 53.0
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 3.0e-91 339.7 420 54.5
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 8.8e-91 338.2 420 55.0
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 8.8e-91 338.2 410 53.7
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 7.4e-90 335.1 320 65.0
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 6.3e-89 332.0 434 53.2
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 8.2e-89 331.6 333 62.5
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 2.0e-87 327.0 444 51.4
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 1.7e-86 323.9 324 61.1
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 3.2e-85 319.7 329 56.2
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 2.1e-84 317.0 353 58.6
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 7.9e-84 315.1 410 52.0
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 3.0e-83 313.2 340 62.1
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 6.3e-81 305.4 354 54.8
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 1.1e-80 304.7 345 57.1
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 1.1e-77 294.7 410 50.2
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 2.8e-73 280.0 377 49.9
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 3.2e-69 266.5 363 50.7
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 1.6e-68 264.2 342 50.6
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 6.1e-68 262.3 367 50.1
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.0e-64 248.8 397 48.9
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.7e-63 246.9 244 64.8
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 3.5e-63 246.5 414 43.0
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.8e-57 226.9 286 51.0
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.1e-56 224.9 228 58.3
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.7e-54 217.6 360 43.9
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 1.3e-49 201.4 209 59.8
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 6.1e-44 182.6 264 51.1
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 6.1e-44 182.6 264 51.1
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 1.0e-43 181.8 345 43.5
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.0e-43 181.8 241 49.0
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.0e-42 177.6 168 57.7
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.2e-39 168.3 213 53.5
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 6.0e-39 166.0 276 38.8
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 3.9e-38 163.3 343 42.9
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 1.6e-36 157.9 346 35.3
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.5e-34 151.4 326 39.6
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 2.6e-34 150.6 228 46.9
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 4.9e-33 146.4 102 73.5
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 7.0e-32 142.5 284 34.2
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 1.1e-29 135.2 209 46.4
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 5.8e-26 122.9 109 63.3
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 2.3e-22 110.9 150 54.7
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 2.8e-20 104.0 260 31.9
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 4.4e-18 96.7 114 64.0
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 1.1e-08 65.5 70 54.3
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.4e-08 65.1 224 26.8
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 9.3e-08 62.4 120 39.2


User provided reference genes

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