Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 6.6e-221 770.4 385 100.0
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 2.6e-92 343.2 204 85.8
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 8.6e-88 328.2 190 87.9
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 4.3e-87 325.9 181 90.1
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 4.3e-87 325.9 181 90.1
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 4.3e-87 325.9 181 90.1
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 4.3e-87 325.9 181 90.1
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.8e-85 320.5 210 80.5
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 3.1e-85 319.7 194 85.1
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 4.4e-84 315.8 184 88.0
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 2.9e-83 313.2 188 86.2
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 4.6e-81 305.8 184 84.2
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 4.6e-81 305.8 184 84.2
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 1.7e-80 303.9 184 85.3
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 1.7e-80 303.9 184 83.7
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 1.7e-80 303.9 184 83.7
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 1.5e-79 300.8 197 81.7
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 1.5e-79 300.8 197 81.7
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 1.5e-79 300.8 197 81.7
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.5e-79 300.8 184 85.3
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.5e-79 300.8 184 85.3
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 3.3e-79 299.7 184 84.2
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 3.3e-79 299.7 184 84.2
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 3.3e-79 299.7 184 85.9
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 7.3e-79 298.5 184 85.9
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 7.3e-79 298.5 184 85.9
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 7.3e-79 298.5 184 85.9
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 7.3e-79 298.5 184 85.9
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 1.6e-78 297.4 183 84.7
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 2.1e-78 297.0 197 81.2
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 2.1e-78 297.0 197 81.2
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 2.1e-78 297.0 184 85.3
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 3.6e-78 296.2 184 85.9
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 3.6e-78 296.2 184 85.9
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 6.2e-78 295.4 184 83.2
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 1.1e-77 294.7 183 83.6
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 2.4e-77 293.5 183 84.2
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 2.4e-77 293.5 183 84.2
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 2.4e-77 293.5 183 84.2
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 3.1e-77 293.1 183 83.6
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 3.1e-77 293.1 183 83.6
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 3.1e-77 293.1 183 83.6
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 5.2e-77 292.4 187 84.0
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 6.9e-77 292.0 169 88.8
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 9.9e-76 288.1 183 83.1
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 9.9e-76 288.1 183 83.1
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 1.3e-75 287.7 198 79.8
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 1.7e-75 287.3 180 83.9
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.7e-75 287.3 169 87.6
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 1.1e-74 284.6 184 83.2
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 4.2e-74 282.7 171 86.0
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 9.3e-74 281.6 155 91.6
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 1.1e-71 274.6 193 76.2
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 1.1e-71 274.6 183 78.7
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 4.3e-71 272.7 183 79.8
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 7.3e-71 271.9 182 76.9
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 4.8e-70 269.2 185 78.4
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 1.1e-69 268.1 184 77.7
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 3.8e-67 259.6 184 74.5
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 9.3e-66 255.0 156 85.9
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 1.2e-65 254.6 197 72.1
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 2.4e-61 240.4 158 82.9
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 2.6e-60 236.9 167 79.0
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 3.4e-60 236.5 154 81.8
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 4.5e-60 236.1 161 81.4
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 1.3e-56 224.6 159 76.1
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 4.3e-55 219.5 148 79.1
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 1.3e-51 208.0 149 73.8
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 2.3e-48 197.2 129 80.6
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 1.1e-47 194.9 185 55.1
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 1.3e-46 191.4 178 62.4
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 1.6e-46 191.0 115 84.3
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.7e-46 189.9 131 75.6
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 2.4e-45 187.2 133 76.7
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 1.5e-44 184.5 178 59.0
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.5e-44 184.5 178 59.0
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 4.5e-44 183.0 178 58.4
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 4.5e-44 183.0 178 58.4
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 5.9e-44 182.6 196 54.6
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 3.0e-40 170.2 178 58.4
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 3.7e-38 163.3 167 57.5
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 2.9e-35 153.7 106 77.4
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 8.5e-35 152.1 104 74.0
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 8.5e-35 152.1 82 87.8
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 2.5e-34 150.6 112 75.0
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 2.1e-33 147.5 81 90.1
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 1.8e-32 144.4 70 97.1
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 9.7e-31 138.7 68 95.6
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 9.7e-31 138.7 68 95.6
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.7e-30 137.9 109 69.7
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.7e-30 137.9 110 70.9
HanXRQChr00c0055g0571391 Helianthus annuus HOM05D014813 ORTHO05D015968 1.7e-30 137.9 142 52.1
HanXRQMTg0579541 Helianthus annuus HOM05D014813 ORTHO05D015968 1.7e-30 137.9 142 52.1
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 2.8e-30 137.1 70 92.9
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 2.4e-29 134.0 70 91.4
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 3.1e-29 133.7 79 82.3
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 1.7e-27 127.9 70 84.3
Lsat_1_v5_gn_6_108980 Lactuca sativa HOM05D014813 ORTHO05D015968 1.7e-27 127.9 144 49.3
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 2.9e-27 127.1 86 77.9
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 1.0e-24 118.6 97 71.1
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.0e-24 118.6 109 65.1
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 6.7e-24 115.9 70 77.1
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 6.7e-24 115.9 109 64.2
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.1e-23 115.2 69 78.3
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 5.7e-23 112.8 70 77.1
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 6.3e-22 109.4 65 76.9
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 1.4e-21 108.2 182 35.7
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.8e-21 107.8 65 78.5
Nn1g10114 Nelumbo nucifera HOM05D014813 ORTHO05D015968 7.0e-21 105.9 153 39.9
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 9.1e-21 105.5 61 82.0
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 2.0e-20 104.4 71 73.2
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.0e-19 102.1 65 70.8
HanXRQChr09g0250611 Helianthus annuus HOM05D014813 ORTHO05D015968 2.9e-19 100.5 103 55.3
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.5e-18 97.4 52 86.5
ECA039G0009 Erigeron canadensis HOM05D008105 ORTHO05D010309 9.4e-18 95.5 115 45.2
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.3e-15 87.0 49 81.6
Lalb_Chr00c24g0407271 Lupinus albus HOM05D014813 ORTHO05D015968 1.4e-13 81.6 78 56.4
Lalb_Chr01g0010961 Lupinus albus HOM05D014813 ORTHO05D015968 1.4e-13 81.6 78 56.4
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 7.0e-13 79.3 130 47.7
Solyc11g043190.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.2e-12 78.6 47 78.7
arahy.Tifrunner.gnm1.ann1.QPLA3G Arachis hypogaea HOM05D005210 ORTHO05D010080 4.5e-12 76.6 73 53.4
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 4.5e-12 76.6 53 69.8
Nitab4.5_0024895g0040 Nicotiana tabacum HOM05D002864 ORTHO05D008485 4.5e-12 76.6 55 72.7
arahy.Tifrunner.gnm1.ann1.99K035 Arachis hypogaea HOM05D014813 ORTHO05D015968 1.7e-11 74.7 83 48.2
CAN.G1439.9 Capsicum annuum HOM05D002864 ORTHO05D008485 2.2e-11 74.3 48 72.9
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.8e-11 73.6 68 57.4
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 5.0e-11 73.2 62 66.1
Rhsim05G0013600 Rhododendron simsii HOM05D007908 ORTHO05D009653 8.5e-11 72.4 58 67.2
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 9.4e-10 68.9 36 88.9
TAR371G0235 Trochodendron aralioides HOM05D014813 ORTHO05D015968 1.2e-09 68.6 83 43.4
SabraMtG0010000 Salix brachista HOM05D000743 ORTHO05D000580 1.4e-08 65.1 62 46.8
Psat1g132440 Pisum sativum HOM05D002864 ORTHO05D007972 8.8e-08 62.4 31 96.8
Ah.10g028140 Amaranthus hybridus HOM05D008204 ORTHO05D010378 1.2e-07 62.0 91 40.7
Nitab4.5_0000317g0150 Nicotiana tabacum HOM05D002578 ORTHO05D002698 4.4e-07 60.1 43 69.8
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 4.4e-07 60.1 33 75.8
Nitab4.5_0001152g0770 Nicotiana tabacum HOM05D000743 ORTHO05D015968 5.7e-07 59.7 59 44.1
Dinv06718 Davidia involucrata HOM05D031858 ORTHO05D016206 9.8e-07 58.9 77 42.9
Solyc01g049950.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 9.8e-07 58.9 57 63.2
C09p10440 Brassica napus HOM05D002864 ORTHO05D008485 1.3e-06 58.5 30 83.3
ClCG02G008120 Citrullus lanatus HOM05D002864 ORTHO05D008485 6.3e-06 56.2 54 64.8


User provided reference genes

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