Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g5008 Utricularia gibba HOM05D002827 ORTHO05D003148 1.5e-52 209.1 102 100.0
MSTRG.22147 Avicennia marina HOM05D002827 ORTHO05D003148 6.1e-17 90.9 91 53.8
Migut.G01111 Erythranthe guttata HOM05D002827 ORTHO05D003148 1.5e-15 86.3 91 52.7
Migut.D01666 Erythranthe guttata HOM05D002827 ORTHO05D003148 3.4e-15 85.1 91 51.6
arahy.Tifrunner.gnm1.ann1.4E6LTA Arachis hypogaea HOM05D002827 ORTHO05D003148 1.3e-14 83.2 58 67.2
arahy.Tifrunner.gnm1.ann1.FXBY81 Arachis hypogaea HOM05D002827 ORTHO05D003148 1.3e-14 83.2 58 67.2
Migut.G01147 Erythranthe guttata HOM05D002827 ORTHO05D003148 1.3e-14 83.2 73 57.5
MD06G1108500 Malus domestica HOM05D002827 ORTHO05D003148 2.9e-14 82.0 58 65.5
Dinv14559 Davidia involucrata HOM05D002827 ORTHO05D003148 6.4e-14 80.9 67 61.2
Duzib235G1501 Durio zibethinus HOM05D002827 ORTHO05D003148 8.3e-14 80.5 77 55.8
SalBow5G4265 Salvia bowleyana HOM05D002827 ORTHO05D003148 1.4e-13 79.7 69 62.3
Actinidia06294 Actinidia chinensis HOM05D002827 ORTHO05D003148 1.8e-13 79.3 64 60.9
Phvul.001G032500 Phaseolus vulgaris HOM05D002827 ORTHO05D003148 2.4e-13 79.0 94 44.7
TWI18G1132 Tripterygium wilfordii HOM05D002827 ORTHO05D003148 2.4e-13 79.0 67 58.2
MELO3C008111.2 Cucumis melo HOM05D002827 ORTHO05D003148 3.2e-13 78.6 65 64.6
Glyma.17G232000 Glycine max HOM05D002827 ORTHO05D003148 3.2e-13 78.6 75 52.0
Oeu020149.1 Olea europaea HOM05D002827 ORTHO05D003148 4.1e-13 78.2 73 52.1
ClCG08G010750 Citrullus lanatus HOM05D002827 ORTHO05D003148 5.4e-13 77.8 65 63.1
CsaV3_2G033400 Cucumis sativus L. HOM05D002827 ORTHO05D003148 5.4e-13 77.8 65 64.6
Gohir.D05G115600 Gossypium hirsutum HOM05D002827 ORTHO05D003148 7.0e-13 77.4 53 67.9
Gorai.009G119600 Gossypium raimondii HOM05D002827 ORTHO05D003148 7.0e-13 77.4 53 67.9
TAR625G1524 Trochodendron aralioides HOM05D002827 ORTHO05D003148 9.2e-13 77.0 56 66.1
Sed0018704 Sechium edule HOM05D002827 ORTHO05D003148 1.2e-12 76.6 50 72.0
VMungo0647G1213 Vigna mungo HOM05D002827 ORTHO05D003148 1.2e-12 76.6 75 50.7
GSVIVG01029556001 Vitis vinifera HOM05D002827 ORTHO05D003148 1.2e-12 76.6 55 65.5
Manes.06G179501 Manihot esculenta HOM05D002827 ORTHO05D003148 1.6e-12 76.3 85 48.2
Lj5g0007063 Lotus japonicus HOM05D002827 ORTHO05D003148 2.0e-12 75.9 79 48.1
SGA_v2.0_scaffold28G11930 Striga asiatica HOM05D002827 ORTHO05D003148 2.0e-12 75.9 91 47.3
COL.COLO4_31142 Corchorus olitorius HOM05D002827 ORTHO05D003148 2.7e-12 75.5 53 67.9
Manes.06G035900 Manihot esculenta HOM05D002827 ORTHO05D003148 4.6e-12 74.7 75 52.0
Ca_14281_v3 Cicer arietinum L. HOM05D002827 ORTHO05D003148 6.0e-12 74.3 75 52.0
CANSAT21G0155 Cannabis sativa HOM05D002827 ORTHO05D003148 7.8e-12 73.9 53 67.9
QL01p051174 Quercus lobata HOM05D002827 ORTHO05D003148 1.0e-11 73.6 66 57.6
QL02p030245 Quercus lobata HOM05D002827 ORTHO05D003148 2.3e-11 72.4 51 68.6
Aqoxy6G00529 Aquilegia oxysepala HOM05D002827 ORTHO05D003148 3.0e-11 72.0 81 51.9
CSS0037439 Camellia sinensis var. sinensis HOM05D002827 ORTHO05D003148 3.0e-11 72.0 51 64.7
ECA234G3082 Erigeron canadensis HOM05D002827 ORTHO05D003148 3.0e-11 72.0 63 55.6
ECA248G2378 Erigeron canadensis HOM05D002827 ORTHO05D003148 3.0e-11 72.0 63 55.6
Medtr7g029385 Medicago truncatula HOM05D002827 ORTHO05D003148 3.0e-11 72.0 72 50.0
Manes.08G085300 Manihot esculenta HOM05D002827 ORTHO05D003148 3.9e-11 71.6 82 47.6
Rhsim01G0185500 Rhododendron simsii HOM05D001240 ORTHO05D002450 3.9e-11 71.6 51 66.7
SGA_v2.0_scaffold36G14391 Striga asiatica HOM05D002827 ORTHO05D003148 3.9e-11 71.6 91 45.1
Hund05671 Selenicereus undatus HOM05D002827 ORTHO05D003148 6.6e-11 70.9 55 65.5
MBI13_g31554_MAGBIO Magnolia biondii HOM05D002827 ORTHO05D003148 1.9e-10 69.3 52 65.4
Peaxi162Scf00474g00212 Petunia axillaris HOM05D002827 ORTHO05D003148 1.9e-10 69.3 40 75.0
PGSC0003DMG400013566 Solanum tuberosum HOM05D002827 ORTHO05D003148 5.6e-10 67.8 41 70.7
TAR383G0889 Trochodendron aralioides HOM05D002827 ORTHO05D003148 5.6e-10 67.8 75 48.0
HPP92_015359 Vanilla planifolia HOM05D002827 ORTHO05D003148 7.3e-10 67.4 83 44.6
CARHR072500 Cardamine hirsuta HOM05D002827 ORTHO05D003148 9.5e-10 67.0 55 60.0
THA.LOC104813628 Tarenaya hassleriana HOM05D002827 ORTHO05D003148 1.2e-09 66.6 72 47.2
TPR.G22316 Trifolium pratense HOM05D002827 ORTHO05D003148 1.6e-09 66.2 53 62.3
BraA07t31916Z Brassica rapa HOM05D002827 ORTHO05D003148 2.1e-09 65.9 75 44.0
Aa31LG4G2090 Aethionema arabicum HOM05D002827 ORTHO05D003148 2.8e-09 65.5 60 53.3
Ah.15g094290 Amaranthus hybridus HOM05D002827 ORTHO05D003148 2.8e-09 65.5 55 60.0
CAN.G1209.37 Capsicum annuum HOM05D002827 ORTHO05D003148 2.8e-09 65.5 40 72.5
Sp5g33930 Schrenkiella parvula HOM05D002827 ORTHO05D003148 2.8e-09 65.5 62 53.2
EL10Ac7g18134 Beta vulgaris HOM05D002827 ORTHO05D003148 3.6e-09 65.1 88 45.5
Atru.chr1.2642 Acer truncatum HOM05D002827 ORTHO05D003148 4.7e-09 64.7 53 62.3
AT1G78910 Arabidopsis thaliana HOM05D002827 ORTHO05D003148 6.2e-09 64.3 62 51.6
Cpa.g.c34848 Carica papaya HOM05D002827 ORTHO05D003148 6.2e-09 64.3 75 46.7
Lalb_Chr03g0040511 Lupinus albus HOM05D002827 ORTHO05D003148 6.2e-09 64.3 53 60.4
AUR62025674 Chenopodium quinoa HOM05D002827 ORTHO05D003148 1.1e-08 63.5 66 48.5
Dinv37035 Davidia involucrata HOM05D002827 ORTHO05D003148 1.1e-08 63.5 75 45.3
Nitab4.5_0000807g0120 Nicotiana tabacum HOM05D002827 ORTHO05D003148 1.1e-08 63.5 40 67.5
Psat1g094560 Pisum sativum HOM05D002827 ORTHO05D003148 1.1e-08 63.5 47 66.0
Carub.0002s2574 Capsella rubella HOM05D002827 ORTHO05D003148 1.8e-08 62.8 84 39.3
Thhalv10018480m.g Eutrema salsugineum HOM05D002827 ORTHO05D003148 1.8e-08 62.8 56 55.4
vmacro06459 Vaccinium macrocarpon HOM05D002827 ORTHO05D003148 1.8e-08 62.8 52 61.5
BcaB03g16051 Brassica carinata HOM05D002827 ORTHO05D003148 2.3e-08 62.4 50 60.0
C06p52810 Brassica napus HOM05D002827 ORTHO05D003148 2.3e-08 62.4 75 42.7
RcHm_v2.0_Chr7g0194671 Rosa chinensis HOM05D002827 ORTHO05D003148 2.3e-08 62.4 72 51.4
Lj1C522G9 Lonicera japonica HOM05D002827 ORTHO05D003148 3.1e-08 62.0 75 45.3
PGR102G2960 Punica granatum HOM05D002827 ORTHO05D003148 3.1e-08 62.0 52 63.5
AUR62001330 Chenopodium quinoa HOM05D002827 ORTHO05D003148 5.2e-08 61.2 59 52.5
Solyc07g042750.4 Solanum lycopersicum HOM05D002827 ORTHO05D003148 5.2e-08 61.2 41 65.9
Sopen07g022400 Solanum pennellii HOM05D002827 ORTHO05D003148 5.2e-08 61.2 41 65.9
Sc15g0001140 Simmondsia chinensis HOM05D002827 ORTHO05D003148 8.9e-08 60.5 73 46.6
AL2G39330 Arabidopsis lyrata HOM05D002827 ORTHO05D003148 1.2e-07 60.1 53 54.7
A07p44080 Brassica napus HOM05D002827 ORTHO05D003148 1.2e-07 60.1 50 58.0
RcHm_v2.0_Chr6g0299231 Rosa chinensis HOM05D002827 ORTHO05D003148 1.2e-07 60.1 59 50.8
Nitab4.5_0000170g0190 Nicotiana tabacum HOM05D002827 ORTHO05D003148 1.5e-07 59.7 40 65.0
BcaC08g47442 Brassica carinata HOM05D002827 ORTHO05D003148 2.0e-07 59.3 55 56.4
BcaC08g47443 Brassica carinata HOM05D002827 ORTHO05D003148 2.0e-07 59.3 55 56.4
BolC6t40298H Brassica oleracea HOM05D002827 ORTHO05D003148 2.0e-07 59.3 55 56.4
Lsat_1_v5_gn_9_71340 Lactuca sativa HOM05D002827 ORTHO05D004512 2.6e-07 58.9 63 49.2
RcHm_v2.0_Chr1g0363621 Rosa chinensis HOM05D002827 ORTHO05D003148 2.6e-07 58.9 72 48.6
Cc04_g08770 Coffea canephora HOM05D002827 ORTHO05D003148 3.4e-07 58.5 61 50.8
FAN13G0807 Fragaria x ananassa HOM05D002827 ORTHO05D003148 5.8e-07 57.8 105 40.0
Os08g0520100 Oryza sativa ssp. japonica HOM05D002827 ORTHO05D003148 7.5e-07 57.4 63 52.4
Ciclev10031422m.g Citrus clementina HOM05D002827 ORTHO05D003148 8.3e-06 53.9 57 54.4


User provided reference genes

Program Settings