Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 2.0e-71 272.3 140 100.0
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 2.1e-55 219.2 140 77.9
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 7.8e-55 217.2 140 77.9
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 3.9e-54 214.9 141 78.7
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 3.9e-54 214.9 141 78.7
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 6.6e-54 214.2 140 78.6
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 1.1e-53 213.4 140 76.4
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 1.9e-53 212.6 140 78.6
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 1.9e-53 212.6 140 76.4
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 3.3e-53 211.8 140 75.7
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 4.3e-53 211.5 139 77.7
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 4.3e-53 211.5 139 77.0
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 4.3e-53 211.5 139 77.0
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 5.6e-53 211.1 140 75.7
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 9.5e-53 210.3 140 77.1
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.6e-52 209.5 140 77.1
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 3.6e-52 208.4 140 76.4
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 3.6e-52 208.4 140 75.0
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 4.7e-52 208.0 140 75.0
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 1.4e-51 206.5 139 74.1
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 1.8e-51 206.1 140 75.7
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 1.8e-51 206.1 140 73.6
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 3.1e-51 205.3 140 75.7
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 5.2e-51 204.5 142 74.6
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 6.8e-51 204.1 140 73.6
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 6.8e-51 204.1 140 76.4
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 6.8e-51 204.1 141 73.8
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 6.8e-51 204.1 140 77.1
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 6.8e-51 204.1 140 77.1
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.2e-50 203.4 140 75.0
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.5e-50 203.0 139 77.0
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 1.5e-50 203.0 140 72.9
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 1.5e-50 203.0 140 77.9
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 1.5e-50 203.0 140 72.9
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 1.5e-50 203.0 140 72.1
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 1.5e-50 203.0 142 75.4
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 2.0e-50 202.6 140 76.4
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 2.6e-50 202.2 139 74.8
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 3.4e-50 201.8 140 72.1
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 3.4e-50 201.8 140 72.1
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.4e-50 201.8 140 73.6
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 4.4e-50 201.4 140 74.3
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 5.8e-50 201.1 141 73.8
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 5.8e-50 201.1 139 72.7
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 5.8e-50 201.1 139 72.7
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 5.8e-50 201.1 139 72.7
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 5.8e-50 201.1 139 72.7
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 5.8e-50 201.1 139 72.7
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 5.8e-50 201.1 139 72.7
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.8e-50 201.1 137 74.5
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 7.6e-50 200.7 139 72.7
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 7.6e-50 200.7 140 76.4
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 7.6e-50 200.7 140 71.4
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 7.6e-50 200.7 140 72.1
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 9.9e-50 200.3 141 73.0
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 1.3e-49 199.9 140 72.1
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 2.2e-49 199.1 139 71.2
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 2.2e-49 199.1 140 72.1
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 2.2e-49 199.1 140 72.1
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 2.2e-49 199.1 140 75.0
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 3.8e-49 198.4 137 74.5
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 3.8e-49 198.4 140 71.4
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 3.8e-49 198.4 139 74.8
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 4.9e-49 198.0 134 76.9
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 6.4e-49 197.6 139 72.7
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 6.4e-49 197.6 139 72.7
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 6.4e-49 197.6 139 72.7
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 6.4e-49 197.6 139 72.7
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 6.4e-49 197.6 139 72.7
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 6.4e-49 197.6 140 70.7
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 1.1e-48 196.8 140 71.4
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 1.1e-48 196.8 140 73.6
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.1e-48 196.8 140 71.4
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 1.4e-48 196.4 140 71.4
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 1.4e-48 196.4 140 71.4
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 1.4e-48 196.4 139 71.9
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 1.9e-48 196.1 140 71.4
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 3.2e-48 195.3 140 71.4
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 3.2e-48 195.3 140 70.7
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 4.1e-48 194.9 140 70.7
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 4.1e-48 194.9 140 70.7
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 5.4e-48 194.5 138 71.0
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 5.4e-48 194.5 140 72.1
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 5.4e-48 194.5 141 73.8
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 7.1e-48 194.1 140 69.3
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 7.1e-48 194.1 141 73.0
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 9.2e-48 193.7 142 71.8
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 9.2e-48 193.7 140 72.1
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 1.2e-47 193.4 141 71.6
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 1.2e-47 193.4 140 72.9
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 1.6e-47 193.0 140 70.0
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 2.1e-47 192.6 141 73.0
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.1e-47 192.6 141 72.3
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 2.1e-47 192.6 135 74.8
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.1e-47 192.6 139 72.7
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 2.1e-47 192.6 140 72.1
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 3.5e-47 191.8 139 72.7
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 6.0e-47 191.0 139 72.7
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 6.0e-47 191.0 141 71.6
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 6.0e-47 191.0 138 71.7
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 7.8e-47 190.7 139 71.2
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 7.8e-47 190.7 142 73.2
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 1.0e-46 190.3 144 70.8
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 1.7e-46 189.5 140 71.4
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 2.3e-46 189.1 140 72.1
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 2.3e-46 189.1 140 72.1
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 3.9e-46 188.3 140 72.1
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 5.1e-46 188.0 144 69.4
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 5.1e-46 188.0 140 70.7
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 6.6e-46 187.6 131 71.0
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 8.6e-46 187.2 139 71.9
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 8.6e-46 187.2 140 68.6
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 8.6e-46 187.2 140 68.6
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.1e-45 186.8 140 70.7
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 2.5e-45 185.7 139 67.6
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 3.3e-45 185.3 143 66.4
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 4.3e-45 184.9 141 70.9
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.6e-44 183.0 135 71.1
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 3.6e-44 181.8 139 71.9
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 4.7e-44 181.4 156 64.1
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 8.1e-44 180.6 137 67.9
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.1e-43 180.3 140 67.9
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 1.1e-43 180.3 140 69.3
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 1.4e-43 179.9 137 68.6
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 3.1e-43 178.7 134 70.9
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 4.0e-43 178.3 142 67.6
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 5.2e-43 177.9 140 66.4
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 6.9e-43 177.6 141 70.9
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 6.9e-43 177.6 138 69.6
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.6e-42 175.6 132 67.4
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 7.6e-42 174.1 141 66.7
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.9e-41 172.2 140 64.3
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 1.4e-40 169.9 140 65.7
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 7.8e-39 164.1 140 62.9
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 7.8e-39 164.1 140 62.9
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 1.5e-37 159.8 91 86.8
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.5e-37 159.1 140 60.0
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 5.6e-37 157.9 88 87.5
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 2.8e-36 155.6 140 61.4
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 4.8e-36 154.8 135 60.0
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.4e-35 153.3 153 59.5
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 2.4e-35 152.5 159 57.2
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 6.9e-35 151.0 141 57.4
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.2e-34 150.2 109 65.1
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 3.4e-34 148.7 147 58.5
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 4.9e-33 144.8 134 58.2
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 9.3e-32 140.6 114 64.9
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 6.0e-31 137.9 137 59.1
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 7.9e-31 137.5 140 57.1
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.8e-30 136.3 148 54.7
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 1.1e-29 133.7 140 54.3
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.3e-28 130.2 140 55.7
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.8e-28 129.0 147 53.1
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 1.5e-26 123.2 90 70.0
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.5e-26 123.2 118 58.5
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 9.9e-26 120.6 90 71.1
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.9e-25 119.0 138 52.9
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 5.6e-21 104.8 53 90.6
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 5.6e-21 104.8 67 71.6
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 1.3e-20 103.6 100 57.0
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 3.7e-20 102.1 138 43.5
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 3.2e-16 89.0 80 56.2
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 5.5e-16 88.2 50 84.0
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.5e-10 70.1 74 54.1
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 2.0e-10 69.7 79 51.9
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 2.3e-06 56.2 32 90.6


User provided reference genes

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