Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g3753 Utricularia gibba HOM05D000333 ORTHO05D000190 2.4e-77 292.0 137 100.0
unitig_22.g5301 Utricularia gibba HOM05D000333 ORTHO05D000190 6.1e-20 101.3 89 64.0
Gorai.004G224900 Gossypium raimondii HOM05D000333 ORTHO05D000190 7.5e-10 67.8 146 40.4
Gohir.A08G193850 Gossypium hirsutum HOM05D000333 ORTHO05D000190 2.2e-09 66.2 151 39.1
Gohir.D08G211650 Gossypium hirsutum HOM05D000333 ORTHO05D000190 2.2e-09 66.2 151 39.1
ClCG07G001730 Citrullus lanatus HOM05D000333 ORTHO05D000190 1.1e-08 63.9 162 34.6
SalBow4G0902 Salvia bowleyana HOM05D000333 ORTHO05D000190 1.4e-08 63.5 134 39.6
SGA_v2.0_scaffold1G00711 Striga asiatica HOM05D000333 ORTHO05D000190 1.8e-08 63.2 69 52.2
SGA_v2.0_scaffold8G04654 Striga asiatica HOM05D000333 ORTHO05D000190 4.1e-08 62.0 136 41.2
Migut.N02256 Erythranthe guttata HOM05D000333 ORTHO05D000190 5.4e-08 61.6 111 42.3
Hma1.2p1_1061F.1_g253270 Hydrangea macrophylla HOM05D000333 ORTHO05D000190 5.4e-08 61.6 156 33.3
MSTRG.21436 Avicennia marina HOM05D000333 ORTHO05D000190 7.0e-08 61.2 157 33.8
Oeu015459.1 Olea europaea HOM05D000333 ORTHO05D000190 7.0e-08 61.2 125 37.6
DCAR_012630 Daucus carota HOM05D000333 ORTHO05D000190 9.1e-08 60.8 167 31.7
MSTRG.18377 Avicennia marina HOM05D000333 ORTHO05D000190 1.2e-07 60.5 122 38.5
Sabra02G0181800 Salix brachista HOM05D000333 ORTHO05D000190 1.2e-07 60.5 169 33.7
FAN06G4863 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.6e-07 60.1 66 47.0
Lsat_1_v5_gn_5_86201 Lactuca sativa HOM05D000333 ORTHO05D000190 2.0e-07 59.7 132 38.6
Oeu063860.1 Olea europaea HOM05D003047 ORTHO05D000627 2.0e-07 59.7 92 43.5
SGA_v2.0_scaffold66G22462 Striga asiatica HOM05D000333 ORTHO05D000190 2.0e-07 59.7 129 39.5
BraA06t26799Z Brassica rapa HOM05D000333 ORTHO05D000190 3.5e-07 58.9 154 34.4
MELO3C012789.2 Cucumis melo HOM05D000333 ORTHO05D000190 3.5e-07 58.9 163 31.9
Duzib170G0300 Durio zibethinus HOM05D000333 ORTHO05D000190 3.5e-07 58.9 114 39.5
COL.COLO4_04694 Corchorus olitorius HOM05D001336 ORTHO05D001211 4.5e-07 58.5 177 32.8
Potri.002G238700 Populus trichocarpa HOM05D000333 ORTHO05D000190 4.5e-07 58.5 173 32.9
Sabra14G0136500 Salix brachista HOM05D000333 ORTHO05D000190 4.5e-07 58.5 160 32.5
SGA_v2.0_scaffold444G51709 Striga asiatica HOM05D001250 ORTHO05D000627 4.5e-07 58.5 132 37.1
A06p38830 Brassica napus HOM05D000333 ORTHO05D000190 5.9e-07 58.2 153 35.3
RcHm_v2.0_Chr4g0424291 Rosa chinensis HOM05D001250 ORTHO05D000627 5.9e-07 58.2 62 46.8
unitig_52.g17292 Utricularia gibba HOM05D000333 ORTHO05D000190 5.9e-07 58.2 61 50.8
vmacro02742 Vaccinium macrocarpon HOM05D000333 ORTHO05D000190 5.9e-07 58.2 166 33.1
Zm00001eb278830 Zea mays HOM05D003047 ORTHO05D000627 5.9e-07 58.2 98 37.8
AT3G58070 Arabidopsis thaliana HOM05D003047 ORTHO05D000627 7.7e-07 57.8 80 45.0
Cfa019953 Carpinus fangiana HOM05D000333 ORTHO05D000190 7.7e-07 57.8 56 50.0
PGR031G1471 Punica granatum HOM05D000333 ORTHO05D000190 7.7e-07 57.8 77 42.9
Rhsim01G0257900 Rhododendron simsii HOM05D000333 ORTHO05D000190 7.7e-07 57.8 155 34.2
MSTRG.22787 Avicennia marina HOM05D000333 ORTHO05D000190 1.0e-06 57.4 62 48.4
CARHR188330 Cardamine hirsuta HOM05D000333 ORTHO05D000190 1.0e-06 57.4 57 50.9
Cfa020137 Carpinus fangiana HOM05D003047 ORTHO05D000627 1.0e-06 57.4 109 34.9
PGSC0003DMG400015816 Solanum tuberosum HOM05D000333 ORTHO05D000190 1.0e-06 57.4 42 69.0
A02p37780 Brassica napus HOM05D000333 ORTHO05D000190 1.3e-06 57.0 146 34.2
C07p39490 Brassica napus HOM05D000333 ORTHO05D000190 1.3e-06 57.0 144 36.8
BraA02t08761Z Brassica rapa HOM05D000333 ORTHO05D000190 1.3e-06 57.0 146 34.2
COL.COLO4_38493 Corchorus olitorius HOM05D001250 ORTHO05D000627 1.3e-06 57.0 96 36.5
FvH4_7g04251 Fragaria vesca HOM05D000333 ORTHO05D000190 1.3e-06 57.0 66 47.0
FAN02G4135 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.3e-06 57.0 66 47.0
FAN03G2930 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.3e-06 57.0 66 47.0
FAN04G0902 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.3e-06 57.0 66 47.0
FAN10G0778 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.3e-06 57.0 66 47.0
FAN12G0373 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.3e-06 57.0 66 47.0
FAN16G0921 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.3e-06 57.0 66 47.0
FAN18G3909 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.3e-06 57.0 66 47.0
FAN21G0762 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.3e-06 57.0 66 47.0
FAN21G1166 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.3e-06 57.0 66 47.0
FAN23G1246 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.3e-06 57.0 66 47.0
FAN26G0350 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.3e-06 57.0 66 47.0
FAN27G0299 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.3e-06 57.0 66 47.0
FAN28G2336 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.3e-06 57.0 66 47.0
Nitab4.5_0000846g0050 Nicotiana tabacum HOM05D001336 ORTHO05D001211 1.3e-06 57.0 35 77.1
Peaxi162Scf00052g00092 Petunia axillaris HOM05D000333 ORTHO05D000190 1.3e-06 57.0 35 77.1
TAR625G1141 Trochodendron aralioides HOM05D000333 ORTHO05D000190 1.3e-06 57.0 50 54.0
TAR633G0248 Trochodendron aralioides HOM05D000333 ORTHO05D000190 1.3e-06 57.0 50 54.0
BcaC03g17681 Brassica carinata HOM05D000333 ORTHO05D000190 1.7e-06 56.6 146 34.2
C02p56880 Brassica napus HOM05D000333 ORTHO05D000190 1.7e-06 56.6 146 34.2
BolC7t44468H Brassica oleracea HOM05D000333 ORTHO05D000190 1.7e-06 56.6 144 36.1
CAN.G546.50 Capsicum annuum HOM05D000333 ORTHO05D000190 1.7e-06 56.6 34 79.4
CARHR168390 Cardamine hirsuta HOM05D003047 ORTHO05D000627 1.7e-06 56.6 68 47.1
DCAR_018549 Daucus carota HOM05D000333 ORTHO05D000190 1.7e-06 56.6 74 51.4
HanXRQChr02g0053961 Helianthus annuus HOM05D003047 ORTHO05D000627 1.7e-06 56.6 91 38.5
MBI09_g07741_MAGBIO Magnolia biondii HOM05D001250 ORTHO05D000627 1.7e-06 56.6 97 38.1
Medtr7g086860 Medicago truncatula HOM05D000333 ORTHO05D000190 1.7e-06 56.6 37 67.6
Phvul.003G238800 Phaseolus vulgaris HOM05D000333 ORTHO05D000190 1.7e-06 56.6 78 47.4
Sopen09g024930 Solanum pennellii HOM05D000333 ORTHO05D000190 1.7e-06 56.6 48 60.4
PGSC0003DMG400010912 Solanum tuberosum HOM05D000333 ORTHO05D000190 1.7e-06 56.6 40 60.0
arahy.Tifrunner.gnm1.ann1.T9ECGJ Arachis hypogaea HOM05D000333 ORTHO05D000190 2.3e-06 56.2 53 58.5
Migut.D01100 Erythranthe guttata HOM05D000333 ORTHO05D000190 2.3e-06 56.2 121 32.2
Migut.I00713 Erythranthe guttata HOM05D000333 ORTHO05D000190 2.3e-06 56.2 37 67.6
FvH4_2g40850 Fragaria vesca HOM05D000333 ORTHO05D000190 2.3e-06 56.2 74 39.2
FAN15G1353 Fragaria x ananassa HOM05D000333 ORTHO05D000190 2.3e-06 56.2 74 39.2
FAN20G1192 Fragaria x ananassa HOM05D000333 ORTHO05D000190 2.3e-06 56.2 72 40.3
FAN20G3054 Fragaria x ananassa HOM05D000333 ORTHO05D000190 2.3e-06 56.2 72 40.3
Os07g0593000 Oryza sativa ssp. japonica HOM05D000333 ORTHO05D000190 2.3e-06 56.2 145 33.1
Sp2g19280 Schrenkiella parvula HOM05D000333 ORTHO05D000190 2.3e-06 56.2 137 34.3
SGA_v2.0_scaffold3G01582 Striga asiatica HOM05D000333 ORTHO05D000190 2.3e-06 56.2 151 33.8
SGA_v2.0_scaffold5G02760 Striga asiatica HOM05D000333 ORTHO05D000190 2.3e-06 56.2 54 53.7
AL6G36820 Arabidopsis lyrata HOM05D000333 ORTHO05D000190 2.9e-06 55.8 64 48.4
MSTRG.11174 Avicennia marina HOM05D000333 ORTHO05D000190 2.9e-06 55.8 53 52.8
BcaNung06031 Brassica carinata HOM05D000333 ORTHO05D000190 2.9e-06 55.8 120 35.8
A03p23480 Brassica napus HOM05D003047 ORTHO05D000627 2.9e-06 55.8 59 49.2
C06p43190 Brassica napus HOM05D001250 ORTHO05D000627 2.9e-06 55.8 159 30.2
BraA02t05201Z Brassica rapa HOM05D000333 ORTHO05D000190 2.9e-06 55.8 93 38.7
BraA03t11564Z Brassica rapa HOM05D003047 ORTHO05D000627 2.9e-06 55.8 59 49.2
Ca_08108_v3 Cicer arietinum L. HOM05D000333 ORTHO05D000190 2.9e-06 55.8 37 64.9
ClCG05G010390 Citrullus lanatus HOM05D000333 ORTHO05D000190 2.9e-06 55.8 44 59.1
Lalb_Chr11g0067781 Lupinus albus HOM05D000333 ORTHO05D000190 2.9e-06 55.8 138 31.2
Lalb_Chr22g0361411 Lupinus albus HOM05D000333 ORTHO05D000190 2.9e-06 55.8 61 54.1
MD09G1005900 Malus domestica HOM05D000333 ORTHO05D000190 2.9e-06 55.8 54 53.7
Nn4g23905 Nelumbo nucifera HOM05D001250 ORTHO05D000627 2.9e-06 55.8 90 40.0
Nitab4.5_0000034g0090 Nicotiana tabacum HOM05D001250 ORTHO05D000627 2.9e-06 55.8 52 51.9
Zm00001eb177600 Zea mays HOM05D000333 ORTHO05D000190 2.9e-06 55.8 93 37.6
COL.COLO4_36832 Corchorus olitorius HOM05D000333 ORTHO05D000190 3.8e-06 55.5 59 55.9
Haze_20032 Corylus avellana HOM05D003047 ORTHO05D000627 3.8e-06 55.5 109 33.9
Lsat_1_v5_gn_5_179601 Lactuca sativa HOM05D000333 ORTHO05D000190 3.8e-06 55.5 64 50.0
Oeu017349.1 Olea europaea HOM05D000333 ORTHO05D000190 3.8e-06 55.5 54 57.4
Potri.018G094300 Populus trichocarpa HOM05D000333 ORTHO05D000190 3.8e-06 55.5 139 33.8
SHI30070 Sapria himalayana HOM05D003047 ORTHO05D000627 3.8e-06 55.5 43 58.1
Sed0004484 Sechium edule HOM05D000333 ORTHO05D000190 3.8e-06 55.5 41 65.9
Sed0016667 Sechium edule HOM05D000333 ORTHO05D000190 3.8e-06 55.5 97 38.1
Actinidia37579 Actinidia chinensis HOM05D001336 ORTHO05D001211 5.0e-06 55.1 34 76.5
MSTRG.19922 Avicennia marina HOM05D003047 ORTHO05D000627 5.0e-06 55.1 105 36.2
Ca_01131_v3 Cicer arietinum L. HOM05D000333 ORTHO05D000190 5.0e-06 55.1 69 42.0
CsaV3_3G028730 Cucumis sativus L. HOM05D000333 ORTHO05D000190 5.0e-06 55.1 88 45.5
CsaV3_4G036740 Cucumis sativus L. HOM05D000333 ORTHO05D000190 5.0e-06 55.1 41 61.0
Dinv33299 Davidia involucrata HOM05D000333 ORTHO05D000190 5.0e-06 55.1 82 42.7
Lsat_1_v5_gn_3_9161 Lactuca sativa HOM05D000333 ORTHO05D000190 5.0e-06 55.1 61 47.5
Lj9P495T27 Lonicera japonica HOM05D000333 ORTHO05D000190 5.0e-06 55.1 44 59.1
MD13G1039200 Malus domestica HOM05D001250 ORTHO05D000627 5.0e-06 55.1 126 34.9
MD16G1040100 Malus domestica HOM05D001250 ORTHO05D000627 5.0e-06 55.1 126 34.1
Manes.09G038600 Manihot esculenta HOM05D003047 ORTHO05D000627 5.0e-06 55.1 110 35.5
Sed0006952 Sechium edule HOM05D000333 ORTHO05D000190 5.0e-06 55.1 152 34.2
Thecc.04G043200 Theobroma cacao HOM05D000333 ORTHO05D000190 5.0e-06 55.1 138 35.5
unitig_62.g23751 Utricularia gibba HOM05D000333 ORTHO05D000190 5.0e-06 55.1 43 58.1
Aa31LG5G11530 Aethionema arabicum HOM05D000333 ORTHO05D000190 6.6e-06 54.7 43 58.1
EL10Ac7g17799 Beta vulgaris HOM05D000333 ORTHO05D000190 6.6e-06 54.7 95 40.0
EL10Ac9g22224 Beta vulgaris HOM05D000333 ORTHO05D000190 6.6e-06 54.7 55 58.2
BcaB03g15413 Brassica carinata HOM05D001250 ORTHO05D000627 6.6e-06 54.7 170 31.8
BcaB04g19813 Brassica carinata HOM05D000333 ORTHO05D000190 6.6e-06 54.7 62 48.4
BcaB07g29937 Brassica carinata HOM05D000333 ORTHO05D000190 6.6e-06 54.7 62 50.0
BcaC03g17923 Brassica carinata HOM05D000333 ORTHO05D000190 6.6e-06 54.7 62 50.0
A02p39920 Brassica napus HOM05D000333 ORTHO05D000190 6.6e-06 54.7 62 50.0
C02p59820 Brassica napus HOM05D000333 ORTHO05D000190 6.6e-06 54.7 62 50.0
BolC2t12039H Brassica oleracea HOM05D000333 ORTHO05D000190 6.6e-06 54.7 62 50.0
BraA02t08955Z Brassica rapa HOM05D000333 ORTHO05D000190 6.6e-06 54.7 62 50.0
CANSAT25G1246 Cannabis sativa HOM05D000333 ORTHO05D000190 6.6e-06 54.7 49 55.1
CANSAT25G2548 Cannabis sativa HOM05D000333 ORTHO05D000190 6.6e-06 54.7 49 55.1
Carub.0024s0019 Capsella rubella HOM05D000333 ORTHO05D000190 6.6e-06 54.7 43 58.1
Cpa.g.sc233.17 Carica papaya HOM05D000333 ORTHO05D000190 6.6e-06 54.7 62 50.0
ClCG11G012970 Citrullus lanatus HOM05D000333 ORTHO05D000190 6.6e-06 54.7 59 50.8
CsaV3_3G018110 Cucumis sativus L. HOM05D000333 ORTHO05D000190 6.6e-06 54.7 44 56.8
ECA246G0333 Erigeron canadensis HOM05D000333 ORTHO05D000190 6.6e-06 54.7 72 41.7
Glyma.02G162200 Glycine max HOM05D000333 ORTHO05D000190 6.6e-06 54.7 36 66.7
Glyma.19G097200 Glycine max HOM05D000333 ORTHO05D000190 6.6e-06 54.7 36 69.4
Gohir.A07G201600 Gossypium hirsutum HOM05D000333 ORTHO05D000190 6.6e-06 54.7 116 37.1
HanXRQChr06g0163951 Helianthus annuus HOM05D000333 ORTHO05D000190 6.6e-06 54.7 78 42.3
HanXRQChr17g0558931 Helianthus annuus HOM05D001250 ORTHO05D000627 6.6e-06 54.7 135 34.1
MBI18_g24952_MAGBIO Magnolia biondii HOM05D001250 ORTHO05D000627 6.6e-06 54.7 76 40.8
Manes.13G044000 Manihot esculenta HOM05D000333 ORTHO05D000190 6.6e-06 54.7 41 65.9
Psat4g011480 Pisum sativum HOM05D000333 ORTHO05D000190 6.6e-06 54.7 140 36.4
Potri.004G097900 Populus trichocarpa HOM05D001250 ORTHO05D000627 6.6e-06 54.7 154 30.5
Sp2g22370 Schrenkiella parvula HOM05D000333 ORTHO05D000190 6.6e-06 54.7 62 50.0
Sed0018853 Sechium edule HOM05D000333 ORTHO05D000190 6.6e-06 54.7 44 59.1
THA.LOC104818940 Tarenaya hassleriana HOM05D000333 ORTHO05D000190 6.6e-06 54.7 53 52.8
TWI34G0720 Tripterygium wilfordii HOM05D000333 ORTHO05D000190 6.6e-06 54.7 51 58.8
VMungo1383G0745 Vigna mungo HOM05D001250 ORTHO05D000627 6.6e-06 54.7 43 58.1
A03p00070 Brassica napus HOM05D000333 ORTHO05D000190 8.6e-06 54.3 78 41.0
C03p00210 Brassica napus HOM05D000333 ORTHO05D000190 8.6e-06 54.3 78 41.0
BraA03t09396Z Brassica rapa HOM05D000333 ORTHO05D000190 8.6e-06 54.3 78 41.0
Duzib106G1122 Durio zibethinus HOM05D003047 ORTHO05D000627 8.6e-06 54.3 43 55.8
Duzib211G0083 Durio zibethinus HOM05D001250 ORTHO05D000627 8.6e-06 54.3 53 56.6
Migut.D00516 Erythranthe guttata HOM05D000333 ORTHO05D000190 8.6e-06 54.3 80 45.0
Gohir.D07G207900 Gossypium hirsutum HOM05D000333 ORTHO05D000190 8.6e-06 54.3 116 37.1
HanXRQChr13g0398371 Helianthus annuus HOM05D003047 ORTHO05D000627 8.6e-06 54.3 80 41.2
HanXRQChr15g0489261 Helianthus annuus HOM05D000333 ORTHO05D000190 8.6e-06 54.3 66 45.5
Lsat_1_v5_gn_6_36341 Lactuca sativa HOM05D003047 ORTHO05D000627 8.6e-06 54.3 94 37.2
Lj3g0021707 Lotus japonicus HOM05D000333 ORTHO05D000190 8.6e-06 54.3 40 60.0
Medtr1g013130 Medicago truncatula HOM05D000333 ORTHO05D000190 8.6e-06 54.3 103 37.9
Phvul.008G124366 Phaseolus vulgaris HOM05D000333 ORTHO05D000190 8.6e-06 54.3 169 34.3
Psat0s780g0040 Pisum sativum HOM05D000333 ORTHO05D000190 8.6e-06 54.3 42 61.9
SGA_v2.0_scaffold170G38784 Striga asiatica HOM05D001250 ORTHO05D000627 8.6e-06 54.3 136 32.4
Thecc.09G171300 Theobroma cacao HOM05D000333 ORTHO05D000190 8.6e-06 54.3 103 40.8
TPR.G22848 Trifolium pratense HOM05D000333 ORTHO05D000190 8.6e-06 54.3 34 73.5
TWI75G0149 Tripterygium wilfordii HOM05D000333 ORTHO05D000190 8.6e-06 54.3 59 52.5
unitig_736.g22305 Utricularia gibba HOM05D003047 ORTHO05D000627 8.6e-06 54.3 83 42.2
VMungo0978G0001 Vigna mungo HOM05D000333 ORTHO05D000190 8.6e-06 54.3 36 66.7
Zm00001eb314340 Zea mays HOM05D003047 ORTHO05D000627 8.6e-06 54.3 71 46.5


User provided reference genes

Program Settings