Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 8.6e-202 706.8 371 100.0
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 5.6e-68 262.3 385 49.4
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 2.6e-65 253.4 392 48.2
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 3.4e-65 253.1 372 46.2
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.6e-62 244.2 365 48.8
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 3.5e-62 243.0 355 45.6
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 1.3e-61 241.1 353 49.0
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.7e-61 240.7 385 42.9
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 3.9e-61 239.6 370 44.9
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 3.9e-61 239.6 369 46.1
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 2.8e-59 233.4 363 43.8
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 4.8e-59 232.6 358 46.6
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.1e-58 229.9 377 43.5
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 3.1e-58 229.9 375 45.9
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 9.9e-57 224.9 376 43.9
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 1.3e-56 224.6 379 43.0
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 1.3e-56 224.6 390 41.0
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 3.8e-56 223.0 365 46.0
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.4e-55 221.1 368 44.8
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 1.2e-54 218.0 366 42.1
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 2.7e-54 216.9 371 42.3
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.3e-53 214.5 380 41.8
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 3.9e-53 213.0 384 40.1
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 1.1e-52 211.5 392 39.8
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 3.3e-52 209.9 402 40.8
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 7.4e-52 208.8 378 41.3
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.1e-51 207.2 383 40.7
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 2.8e-51 206.8 388 40.7
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 4.8e-51 206.1 380 41.1
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.1e-50 204.9 380 40.5
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.1e-50 204.9 391 41.2
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 1.4e-50 204.5 379 38.3
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 3.1e-50 203.4 414 38.2
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.2e-49 201.4 372 40.3
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 3.8e-48 196.4 379 39.6
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.9e-47 194.1 367 43.9
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 5.5e-47 192.6 379 39.1
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 7.1e-47 192.2 364 39.8
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 9.3e-47 191.8 403 36.7
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 9.3e-47 191.8 381 40.7
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.5e-46 189.9 366 39.6
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 4.6e-46 189.5 381 40.4
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 4.6e-46 189.5 386 39.4
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 6.0e-46 189.1 381 39.9
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 7.9e-46 188.7 294 45.9
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 1.0e-45 188.3 346 41.0
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.0e-45 188.3 386 38.9
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.1e-45 186.0 365 38.9
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 8.7e-45 185.3 374 38.2
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 1.5e-44 184.5 327 42.2
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 1.5e-44 184.5 359 39.0
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.9e-44 184.1 416 38.0
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 1.9e-44 184.1 372 40.3
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 2.5e-44 183.7 401 38.2
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 5.6e-44 182.6 371 38.8
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 7.4e-44 182.2 377 38.2
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 9.6e-44 181.8 415 36.9
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 9.6e-44 181.8 400 36.8
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 9.6e-44 181.8 379 39.6
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.6e-43 181.0 410 37.1
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 2.8e-43 180.3 371 38.8
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.8e-43 180.3 415 36.6
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.7e-43 179.9 383 36.8
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 3.7e-43 179.9 359 38.2
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 2.4e-42 177.2 401 36.2
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 3.1e-42 176.8 391 39.4
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 3.1e-42 176.8 411 35.3
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 4.0e-42 176.4 406 36.7
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 5.3e-42 176.0 410 37.1
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 5.3e-42 176.0 391 37.3
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 6.9e-42 175.6 402 37.1
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 6.9e-42 175.6 363 39.4
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.5e-41 174.5 400 37.2
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 1.5e-41 174.5 438 34.9
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 7.6e-41 172.2 310 42.3
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 1.0e-40 171.8 409 35.2
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.9e-40 170.2 390 36.2
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 2.9e-40 170.2 403 37.5
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 6.5e-40 169.1 386 35.2
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 6.5e-40 169.1 410 33.9
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 8.4e-40 168.7 380 38.2
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 8.4e-40 168.7 346 39.9
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 1.9e-39 167.5 420 34.8
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 2.5e-39 167.2 394 38.8
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 3.2e-39 166.8 395 36.2
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 4.2e-39 166.4 320 41.6
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 4.6e-38 162.9 382 35.3
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 4.6e-38 162.9 329 41.6
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 6.0e-38 162.5 408 34.6
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 1.8e-37 161.0 380 37.9
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 3.9e-37 159.8 445 34.2
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 5.1e-37 159.5 368 38.3
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.1e-36 158.3 417 35.3
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 7.4e-36 155.6 414 33.8
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.3e-35 154.8 388 34.8
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 1.6e-35 154.5 415 33.5
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 3.7e-35 153.3 413 34.9
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 3.7e-35 153.3 391 35.3
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 3.7e-35 153.3 384 34.1
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 3.7e-35 153.3 391 35.3
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 4.8e-35 152.9 396 34.6
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 1.1e-34 151.8 380 35.0
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 9.0e-34 148.7 394 33.8
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 1.2e-33 148.3 386 33.9
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 1.2e-33 148.3 386 33.9
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.2e-33 148.3 366 39.9
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.0e-33 147.5 423 31.9
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 2.6e-33 147.1 383 32.9
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 2.6e-33 147.1 383 32.9
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 2.6e-33 147.1 383 32.9
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 4.5e-33 146.4 401 34.7
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 5.9e-33 146.0 386 33.2
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 5.9e-33 146.0 386 33.2
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 5.9e-33 146.0 188 48.9
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 7.6e-33 145.6 377 35.8
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.0e-32 145.2 221 45.7
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 2.2e-32 144.1 412 31.6
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 6.5e-32 142.5 326 37.4
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 1.9e-31 141.0 406 34.2
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 5.5e-31 139.4 384 32.3
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 7.2e-31 139.0 361 36.6
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 2.1e-30 137.5 180 49.4
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 3.6e-30 136.7 331 36.0
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 5.1e-29 132.9 407 30.5
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 4.3e-28 129.8 330 34.8
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.2e-27 127.5 402 32.6
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 2.2e-27 127.5 403 33.0
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 3.7e-27 126.7 366 32.5
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 1.1e-26 125.2 356 30.6
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 3.1e-26 123.6 374 34.5
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 2.6e-25 120.6 357 31.7
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 5.9e-25 119.4 232 42.2
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.3e-24 118.2 414 31.2
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 8.5e-24 115.5 403 30.3
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 9.4e-23 112.1 262 38.9
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 2.4e-18 97.4 274 34.7
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 1.0e-16 92.0 289 35.6
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 3.2e-15 87.0 207 37.7
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 8.8e-13 79.0 199 36.2
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 2.0e-09 67.8 179 33.0
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 5.9e-09 66.2 347 26.8
Potri.011G069300 Populus trichocarpa HOM05D008010 ORTHO05D010085 2.9e-08 63.9 221 29.0
Migut.M01016 Erythranthe guttata HOM05D008010 ORTHO05D010085 2.5e-07 60.8 230 26.1
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 4.2e-07 60.1 82 52.4
FvH4_3g07440 Fragaria vesca HOM05D008010 ORTHO05D010085 5.5e-07 59.7 247 27.5
FAN16G3557 Fragaria x ananassa HOM05D008010 ORTHO05D010085 9.4e-07 58.9 236 28.0
Potri.004G059300 Populus trichocarpa HOM05D008010 ORTHO05D010085 9.4e-07 58.9 245 29.4
Cfa000638 Carpinus fangiana HOM05D008010 ORTHO05D010085 1.2e-06 58.5 217 27.6
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 1.2e-06 58.5 219 29.2
Sabra11G0057100 Salix brachista HOM05D008010 ORTHO05D010085 1.2e-06 58.5 219 29.2
FAN25G1163 Fragaria x ananassa HOM05D008010 ORTHO05D010085 1.6e-06 58.2 247 27.5
Haze_06192 Corylus avellana HOM05D008010 ORTHO05D010085 2.1e-06 57.8 217 27.6
FAN21G0683 Fragaria x ananassa HOM05D008010 ORTHO05D010085 2.1e-06 57.8 251 28.3
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 6.1e-06 56.2 223 28.3
DCAR_027988 Daucus carota HOM05D008010 ORTHO05D010085 6.1e-06 56.2 262 27.5


User provided reference genes

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