Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 8.8e-173 610.1 299 100.0
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 2.7e-121 439.1 304 71.7
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 3.5e-121 438.7 302 72.2
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 4.6e-121 438.3 293 72.7
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 4.3e-119 431.8 308 71.4
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 1.1e-117 427.2 305 69.2
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 2.4e-117 426.0 303 70.0
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 4.0e-117 425.2 304 69.4
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 4.0e-117 425.2 304 69.4
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 1.5e-116 423.3 303 69.3
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 1.5e-116 423.3 317 68.5
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 3.4e-116 422.2 304 69.1
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 5.8e-116 421.4 303 68.3
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 2.2e-115 419.5 306 68.3
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.1e-114 417.2 304 68.8
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 1.1e-114 417.2 307 68.1
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 3.2e-114 415.6 304 67.4
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 1.2e-113 413.7 303 68.3
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 6.0e-113 411.4 305 67.2
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 1.3e-112 410.2 305 66.9
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 1.3e-112 410.2 303 67.7
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 1.3e-112 410.2 306 67.6
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 1.8e-112 409.8 305 68.2
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 3.0e-112 409.1 291 69.1
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 3.9e-112 408.7 300 67.3
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 6.7e-112 407.9 304 67.1
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 8.7e-112 407.5 310 66.5
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.1e-111 407.1 274 71.2
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 1.5e-111 406.8 303 66.3
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 2.5e-111 406.0 304 67.1
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 2.5e-111 406.0 306 66.3
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 4.3e-111 405.2 282 70.2
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 4.3e-111 405.2 303 65.7
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 4.3e-111 405.2 303 66.7
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 7.4e-111 404.4 303 66.0
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 1.6e-110 403.3 302 65.2
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 3.7e-110 402.1 322 64.6
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 4.8e-110 401.7 303 66.7
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 4.8e-110 401.7 269 72.9
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 4.8e-110 401.7 290 67.9
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 1.4e-109 400.2 303 65.3
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 1.4e-109 400.2 303 65.3
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 1.8e-109 399.8 268 72.8
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 5.3e-109 398.3 304 65.1
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 9.0e-109 397.5 305 64.9
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 1.2e-108 397.1 303 65.7
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 1.5e-108 396.7 304 64.5
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 1.5e-108 396.7 277 68.6
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 1.5e-108 396.7 325 62.5
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 2.0e-108 396.4 291 66.7
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 2.0e-108 396.4 312 64.1
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 4.5e-108 395.2 276 68.5
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 9.9e-108 394.0 342 60.8
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 1.3e-107 393.7 316 64.2
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 2.2e-107 392.9 281 67.6
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 2.2e-107 392.9 281 66.9
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 2.9e-107 392.5 282 66.3
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 4.9e-107 391.7 277 67.9
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 6.4e-107 391.3 276 69.6
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 2.4e-106 389.4 281 66.5
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 2.4e-106 389.4 303 64.0
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 4.2e-106 388.7 265 71.3
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 5.5e-106 388.3 300 63.7
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 7.1e-106 387.9 299 63.9
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 1.6e-105 386.7 302 63.6
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 2.7e-105 386.0 358 58.1
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 3.5e-105 385.6 284 67.6
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 4.6e-105 385.2 305 63.0
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 1.0e-104 384.0 299 62.9
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 3.0e-104 382.5 300 63.3
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 3.0e-104 382.5 305 64.6
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 3.9e-104 382.1 306 65.0
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 1.9e-103 379.8 301 62.8
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 2.5e-103 379.4 273 68.1
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 3.3e-103 379.0 300 63.0
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 4.3e-103 378.6 281 67.3
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 9.6e-103 377.5 301 63.1
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.3e-102 377.1 299 61.9
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 6.2e-102 374.8 283 65.7
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 1.8e-101 373.2 270 68.5
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 5.3e-101 371.7 283 64.7
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 1.5e-100 370.2 302 61.3
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 2.6e-100 369.4 302 60.9
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 4.5e-100 368.6 259 66.8
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 6.5e-99 364.8 310 59.0
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 1.4e-98 363.6 306 60.5
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 1.2e-97 360.5 258 67.1
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 2.1e-97 359.8 287 62.4
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 3.5e-97 359.0 293 63.1
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 1.3e-96 357.1 286 61.5
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 3.0e-96 355.9 327 56.6
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 2.5e-95 352.8 304 59.9
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 1.3e-94 350.5 276 63.4
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 1.0e-91 340.9 285 59.3
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 1.0e-91 340.9 270 61.9
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 3.2e-90 335.9 291 61.5
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 7.2e-90 334.7 262 64.5
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 1.6e-89 333.6 276 59.1
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 2.1e-89 333.2 274 61.7
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 2.7e-89 332.8 272 63.2
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 2.7e-89 332.8 272 62.9
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 4.6e-89 332.0 281 61.2
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 3.9e-88 328.9 246 67.1
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 5.7e-87 325.1 251 65.7
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 4.8e-86 322.0 259 62.5
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 8.2e-86 321.2 272 60.3
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.4e-85 320.5 262 61.8
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.4e-85 320.5 268 59.0
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 1.8e-85 320.1 245 64.1
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 1.7e-83 313.5 260 59.6
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 6.1e-81 305.1 245 61.6
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.1e-79 300.8 223 67.7
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 2.8e-78 296.2 306 55.2
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 3.7e-78 295.8 217 66.8
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 5.9e-76 288.5 251 59.8
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 8.5e-75 284.6 215 65.1
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 4.7e-73 278.9 202 68.8
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 1.4e-72 277.3 257 57.2
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.8e-72 276.9 266 53.4
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 4.5e-60 235.7 220 57.3
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 8.5e-59 231.5 298 42.3
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 3.7e-54 216.1 281 44.8
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 2.7e-52 209.9 151 68.9
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 1.2e-49 201.1 263 41.4
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.6e-44 184.1 154 58.4
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 5.9e-44 182.2 120 72.5
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 2.3e-43 180.3 118 71.2
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 2.9e-43 179.9 266 42.1
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.4e-40 171.0 120 70.8
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 6.0e-36 155.6 143 56.6
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 6.8e-32 142.1 119 62.2
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 2.1e-28 130.6 91 70.3
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 3.5e-28 129.8 86 64.0
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 1.7e-27 127.5 87 70.1
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 2.3e-24 117.1 86 61.6
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 8.3e-22 108.6 330 29.1
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 7.8e-20 102.1 75 66.7
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 9.5e-18 95.1 249 28.1
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 2.8e-17 93.6 83 53.0
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 3.6e-17 93.2 217 30.0
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 5.2e-16 89.4 217 28.1
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 1.1e-13 81.6 56 66.1
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 1.4e-13 81.3 61 54.1
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 2.4e-13 80.5 59 66.1
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 3.2e-13 80.1 153 36.6
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 1.0e-11 75.1 204 27.5
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 1.7e-11 74.3 50 62.0
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 9.6e-10 68.6 51 54.9
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 3.6e-09 66.6 46 67.4
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 6.9e-08 62.4 40 65.0
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 2.9e-06 57.0 229 22.7


User provided reference genes

Program Settings