Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 1.2e-288 995.7 493 100.0
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 1.7e-253 879.0 515 82.3
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 3.9e-250 867.8 517 81.6
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 3.3e-249 864.8 494 84.6
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 5.6e-249 864.0 500 83.4
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 8.1e-248 860.1 515 82.3
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 1.1e-247 859.8 520 80.8
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 1.4e-247 859.4 502 83.1
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 4.0e-247 857.8 519 80.9
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 6.8e-247 857.1 500 83.0
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 6.8e-247 857.1 500 83.0
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 1.2e-246 856.3 514 80.9
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.2e-246 856.3 520 80.6
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 1.5e-246 855.9 519 81.3
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 2.0e-246 855.5 501 82.6
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 2.6e-246 855.1 499 83.2
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 3.4e-246 854.7 500 82.6
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 9.9e-246 853.2 500 82.4
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 1.3e-245 852.8 518 80.5
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.3e-245 852.8 518 80.9
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 6.4e-245 850.5 501 82.6
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 8.4e-245 850.1 515 80.0
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 8.4e-245 850.1 500 82.2
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 1.4e-244 849.4 518 80.1
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 2.4e-244 848.6 518 79.9
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 3.2e-244 848.2 528 80.1
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 4.1e-244 847.8 521 80.2
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 7.1e-244 847.0 521 80.0
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 9.2e-244 846.7 525 79.8
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 1.6e-243 845.9 500 82.0
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 1.6e-243 845.9 500 82.0
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 1.6e-243 845.9 526 78.5
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 1.6e-243 845.9 521 79.8
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.5e-243 844.7 521 79.7
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 3.5e-243 844.7 518 79.7
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 4.6e-243 844.3 516 79.3
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 6.0e-243 844.0 521 79.7
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 7.8e-243 843.6 503 81.1
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.7e-242 842.4 521 79.5
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 2.3e-242 842.0 521 79.3
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 3.9e-242 841.3 504 80.0
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 6.6e-242 840.5 519 80.0
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 6.6e-242 840.5 521 79.7
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 6.6e-242 840.5 521 79.1
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 8.7e-242 840.1 517 80.3
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.1e-241 839.7 522 78.2
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 1.5e-241 839.3 516 79.1
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 3.3e-241 838.2 518 78.8
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 5.6e-241 837.4 514 80.2
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 7.3e-241 837.0 521 78.9
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 9.6e-241 836.6 519 79.6
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 9.6e-241 836.6 555 75.9
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 9.6e-241 836.6 500 80.2
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.2e-240 836.3 500 81.0
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 1.6e-240 835.9 519 79.6
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 2.1e-240 835.5 512 79.3
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 2.1e-240 835.5 518 78.4
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 2.1e-240 835.5 518 78.4
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 2.8e-240 835.1 525 77.5
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 3.6e-240 834.7 500 80.2
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 4.7e-240 834.3 517 78.9
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 4.7e-240 834.3 540 76.3
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 4.7e-240 834.3 498 80.3
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 6.2e-240 833.9 516 78.7
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 6.2e-240 833.9 515 79.4
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 1.1e-239 833.2 516 78.7
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 1.4e-239 832.8 501 80.6
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 3.1e-239 831.6 500 80.4
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 4.0e-239 831.2 517 78.1
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 5.2e-239 830.9 500 80.0
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 5.2e-239 830.9 519 78.6
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 6.9e-239 830.5 515 78.4
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 1.2e-238 829.7 513 79.1
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 1.5e-238 829.3 524 77.5
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 2.0e-238 828.9 515 78.6
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 7.6e-238 827.0 499 80.4
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.3e-237 826.2 517 77.8
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 1.3e-237 826.2 529 76.7
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 2.2e-237 825.5 517 77.9
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.9e-237 825.1 499 80.6
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 3.8e-237 824.7 515 77.9
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.8e-237 824.7 500 79.4
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 8.4e-237 823.5 546 74.5
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 5.4e-236 820.8 515 77.7
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 5.4e-236 820.8 515 77.7
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 5.4e-236 820.8 515 77.9
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 5.4e-236 820.8 522 76.4
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 7.1e-236 820.5 515 77.9
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 7.1e-236 820.5 515 77.9
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 2.1e-235 818.9 486 80.5
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 2.7e-235 818.5 500 79.8
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 1.0e-234 816.6 491 81.1
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 1.3e-234 816.2 498 79.3
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 1.3e-234 816.2 493 80.3
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.9e-234 814.7 493 80.5
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 5.1e-234 814.3 501 78.8
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 5.1e-234 814.3 499 78.0
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 3.3e-233 811.6 521 76.4
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 9.6e-233 810.1 522 75.9
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.3e-232 809.7 493 80.7
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.2e-232 807.4 515 76.7
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 1.8e-231 805.8 521 75.6
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.0e-230 802.4 502 77.7
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 6.4e-229 797.3 498 75.9
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 7.9e-227 790.4 500 77.6
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 7.9e-227 790.4 500 77.6
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.8e-226 789.3 520 72.3
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 3.5e-219 765.0 520 70.8
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 5.1e-218 761.1 544 69.7
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 2.1e-216 755.7 481 75.3
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.4e-215 752.3 467 75.8
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 7.6e-214 747.3 481 74.8
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 7.1e-212 740.7 460 76.1
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 5.0e-205 718.0 500 68.2
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 2.7e-203 712.2 461 72.2
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 4.6e-203 711.4 461 72.0
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.4e-202 709.9 473 76.1
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 4.5e-198 694.9 456 70.2
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 3.1e-191 672.2 498 65.7
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 2.0e-190 669.5 385 83.6
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 1.7e-189 666.4 453 68.7
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.7e-189 666.4 515 68.0
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.9e-188 662.9 515 67.6
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 1.7e-184 649.8 520 66.3
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.6e-179 633.3 522 63.8
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 7.5e-177 624.4 472 63.3
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 1.1e-172 610.5 379 80.5
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 9.4e-172 607.4 462 65.6
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 1.8e-162 576.6 327 86.2
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 2.5e-156 556.2 344 81.1
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 2.5e-156 556.2 344 80.2
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 6.0e-142 508.4 285 84.2
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 7.8e-142 508.1 289 82.4
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 1.7e-141 506.9 459 53.8
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 1.8e-138 496.9 288 80.6
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.3e-132 476.1 356 69.9
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 4.7e-131 472.2 355 69.0
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.6e-123 447.2 486 48.1
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 1.8e-122 443.7 249 87.6
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 9.0e-122 441.4 463 49.5
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 1.1e-114 417.9 286 74.8
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 8.2e-91 338.6 188 82.4
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 4.1e-74 283.1 398 39.7
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 4.4e-60 236.5 325 43.1
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 9.7e-60 235.3 327 44.0
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 3.4e-44 183.7 109 76.1
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 2.9e-40 170.6 93 88.2
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.7e-27 128.3 69 79.7
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 6.6e-16 89.7 72 66.7
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 8.6e-16 89.4 53 71.7
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 5.6e-15 86.7 79 57.0
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 2.9e-11 74.3 125 38.4
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 4.9e-11 73.6 48 66.7
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 2.3e-08 64.7 68 51.5
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 3.9e-08 63.9 35 80.0


User provided reference genes

Program Settings