Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 0.0e+00 1714.9 884 100.0
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 0.0e+00 1092.4 882 69.7
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.4e-210 737.3 917 51.6
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.2e-209 734.2 849 51.9
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 2.2e-203 713.4 852 51.9
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 2.0e-201 706.8 914 49.5
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 5.2e-197 692.2 887 49.5
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 7.6e-188 661.8 900 47.8
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 8.7e-184 648.3 870 46.1
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 8.1e-166 588.6 893 45.6
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.1e-158 563.9 931 43.3
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 5.3e-157 559.3 853 44.4
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 4.9e-155 552.7 941 42.3
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 5.5e-154 549.3 904 42.1
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.7e-153 547.0 907 42.2
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.2e-148 531.6 937 41.9
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.5e-148 531.2 937 41.6
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.2e-147 527.3 911 42.7
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.4e-146 524.6 937 40.9
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 9.3e-146 521.9 915 42.3
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.6e-145 520.0 935 40.1
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 3.6e-145 520.0 947 41.5
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 4.6e-145 519.6 927 40.8
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.8e-144 517.7 936 40.0
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 5.1e-144 516.2 928 40.9
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.8e-144 515.4 939 39.9
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 8.8e-144 515.4 921 41.0
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 1.1e-143 515.0 862 42.3
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.5e-143 514.6 951 39.0
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.5e-143 514.6 945 39.0
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.7e-142 511.1 933 39.7
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 4.8e-142 509.6 906 41.4
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 6.3e-142 509.2 920 41.1
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.1e-141 508.4 947 39.2
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.4e-141 508.1 931 40.0
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 1.8e-141 507.7 928 40.6
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 3.1e-141 506.9 894 40.8
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.1e-141 506.9 876 42.1
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 5.3e-141 506.1 928 41.4
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 1.0e-139 501.9 946 39.7
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 3.8e-139 500.0 934 40.1
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 5.0e-139 499.6 875 40.5
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.1e-138 498.4 917 41.7
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 1.4e-136 491.5 943 39.9
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.3e-136 490.7 888 39.0
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 3.0e-136 490.3 919 38.7
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 3.9e-136 490.0 905 41.0
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 6.7e-136 489.2 910 40.9
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 8.8e-136 488.8 892 40.1
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 8.8e-136 488.8 915 38.4
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 2.0e-135 487.6 918 41.0
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.0e-135 487.6 903 40.4
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 2.6e-135 487.3 946 39.6
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 3.3e-135 486.9 917 41.0
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 4.4e-135 486.5 866 40.5
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 5.7e-135 486.1 930 38.8
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.3e-134 485.0 941 38.6
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.3e-134 485.0 962 39.0
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.3e-134 485.0 903 41.0
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.7e-134 484.6 790 44.3
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 2.2e-134 484.2 912 39.7
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 3.7e-134 483.4 688 48.0
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 8.2e-134 482.3 883 40.7
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 1.8e-133 481.1 922 39.7
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.3e-133 479.6 926 38.7
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.5e-132 478.0 926 38.6
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 1.5e-132 478.0 956 39.4
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 2.0e-132 477.6 923 38.7
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.4e-132 476.9 926 38.6
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 1.3e-131 474.9 913 40.3
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 3.8e-131 473.4 912 40.0
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 2.5e-130 470.7 931 39.4
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.7e-129 466.5 949 36.1
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 4.7e-129 466.5 928 40.1
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.3e-128 464.2 950 35.9
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.0e-128 463.8 961 36.6
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 3.9e-128 463.4 888 39.9
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 5.2e-128 463.0 911 38.9
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 8.8e-128 462.2 922 39.3
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 1.1e-127 461.8 928 39.2
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 3.3e-127 460.3 887 40.2
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.4e-127 459.1 867 38.1
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.8e-126 456.4 855 38.6
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.4e-125 454.9 855 38.4
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 7.0e-125 452.6 943 38.5
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 4.5e-124 449.9 923 37.8
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 7.7e-124 449.1 951 38.4
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.2e-123 447.6 930 38.2
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 8.5e-123 445.7 941 36.8
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 5.5e-122 443.0 932 37.1
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.1e-121 441.0 894 38.0
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.8e-120 438.0 909 38.2
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 3.0e-120 437.2 915 37.6
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 6.7e-120 436.0 867 40.0
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.2e-119 435.3 926 38.0
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 1.5e-119 434.9 905 38.3
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 4.8e-118 429.9 1003 36.3
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 1.8e-117 427.9 926 37.0
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 9.1e-117 425.6 695 41.2
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 7.7e-116 422.5 955 36.2
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 1.5e-114 418.3 902 37.7
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.9e-114 417.9 866 38.2
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 2.5e-114 417.5 905 37.8
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 3.2e-114 417.2 948 37.6
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 5.5e-114 416.4 864 38.7
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 2.0e-111 407.9 811 37.5
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 3.4e-111 407.1 907 37.6
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 7.5e-111 406.0 901 36.7
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 9.8e-111 405.6 683 41.9
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 4.8e-110 403.3 732 40.2
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 8.3e-110 402.5 898 35.4
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.1e-109 402.1 887 38.1
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 4.1e-109 400.2 908 35.8
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 5.4e-109 399.8 849 37.7
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.3e-107 394.4 697 40.9
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 2.9e-107 394.0 871 37.3
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 6.6e-107 392.9 907 35.0
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 6.6e-107 392.9 599 46.9
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 4.2e-106 390.2 850 36.9
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 2.8e-105 387.5 834 36.9
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 2.8e-105 387.5 834 36.9
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.2e-102 377.9 888 35.6
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.1e-101 375.6 912 36.2
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 3.1e-101 374.0 885 36.3
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 7.0e-101 372.9 900 35.7
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 9.2e-101 372.5 930 35.6
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 9.2e-101 372.5 888 35.5
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 4.5e-100 370.2 888 35.2
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.3e-99 367.9 868 35.8
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 6.6e-99 366.3 903 35.3
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 7.3e-98 362.8 903 35.0
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 7.3e-98 362.8 903 34.9
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 6.1e-97 359.8 683 40.6
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 1.1e-85 322.4 579 41.5
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 4.1e-85 320.5 852 35.3
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 5.4e-85 320.1 867 33.7
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.7e-83 315.1 456 43.4
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 3.0e-83 314.3 802 32.7
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.6e-83 312.8 710 38.2
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 8.6e-83 312.8 866 32.9
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.9e-77 295.0 622 36.5
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.6e-76 292.0 821 32.6
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 7.8e-76 289.7 787 34.1
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.5e-71 275.4 820 32.6
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.4e-69 268.9 775 32.8
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 6.0e-68 263.5 541 39.9
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 9.0e-64 249.6 799 29.4
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.4e-63 247.7 504 37.7
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.4e-63 247.3 820 31.3
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 6.4e-62 243.4 450 39.6
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 3.6e-57 227.6 470 36.6
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 8.4e-54 216.5 740 31.6
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-53 215.7 403 38.0
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.7e-52 211.5 323 43.7
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 1.8e-43 182.2 207 54.6
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 1.4e-40 172.6 402 38.3
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 3.1e-40 171.4 184 48.9
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 6.0e-36 157.1 555 30.8
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 7.4e-34 150.2 586 27.3
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 3.1e-32 144.8 329 36.5
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 5.0e-30 137.5 266 36.8
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 1.0e-27 129.8 98 56.1
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 8.8e-27 126.7 359 33.4
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 1.1e-24 119.8 176 41.5
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.4e-24 119.4 137 48.9
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 2.9e-22 111.7 268 33.6
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.6e-20 104.8 174 39.1
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 7.9e-20 103.6 202 37.6
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 1.1e-16 93.2 181 36.5
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.3e-16 90.9 259 31.7
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 3.5e-15 88.2 94 45.7
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 6.5e-14 84.0 158 32.3
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.0e-11 76.6 51 64.7
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 2.6e-10 72.0 121 36.4
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 1.4e-08 66.2 52 53.8
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.2e-07 63.2 91 44.0
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.7e-06 59.3 113 35.4
AUR62012685 Chenopodium quinoa HOM05D000561 ORTHO05D000514 8.5e-06 57.0 103 33.0
AUR62021972 Chenopodium quinoa HOM05D000561 ORTHO05D000514 8.5e-06 57.0 103 33.0


User provided reference genes

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