Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 6.2e-120 434.1 214 100.0
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 3.9e-74 282.0 230 63.0
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 2.9e-69 265.8 228 59.6
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 8.5e-69 264.2 227 60.4
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 8.8e-66 254.2 228 57.9
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 2.6e-65 252.7 225 58.7
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 7.5e-65 251.1 228 57.5
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 1.6e-62 243.4 230 57.8
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 1.3e-61 240.4 238 55.0
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.3e-61 240.4 223 57.8
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 1.7e-61 240.0 224 58.0
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 6.5e-61 238.0 223 57.0
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 1.5e-60 236.9 221 56.6
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 5.5e-60 235.0 224 57.6
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 7.2e-60 234.6 221 57.0
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 4.7e-59 231.9 229 54.1
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 4.7e-59 231.9 221 57.5
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 5.2e-58 228.4 226 54.0
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 2.0e-57 226.5 221 57.0
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 2.6e-57 226.1 229 53.7
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 2.6e-57 226.1 229 53.7
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 3.4e-57 225.7 224 56.2
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 7.5e-57 224.6 223 54.3
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 1.7e-56 223.4 220 54.1
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 2.8e-56 222.6 218 54.6
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 3.7e-56 222.2 220 54.1
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 3.7e-56 222.2 220 54.1
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 8.3e-56 221.1 184 61.4
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 1.4e-55 220.3 222 56.3
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 1.8e-55 219.9 244 51.2
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 2.4e-55 219.5 232 53.4
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 2.4e-55 219.5 226 54.9
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 4.1e-55 218.8 217 53.0
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 5.4e-55 218.4 224 54.9
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 9.1e-55 217.6 224 53.6
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 1.2e-54 217.2 226 54.9
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.6e-54 216.9 221 54.8
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 2.7e-54 216.1 229 53.7
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 2.7e-54 216.1 215 56.7
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 2.7e-54 216.1 227 52.0
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 7.7e-54 214.5 225 51.6
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 1.0e-53 214.2 226 54.4
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 1.0e-53 214.2 222 53.6
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 1.7e-53 213.4 234 52.6
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 1.7e-53 213.4 212 52.4
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 1.7e-53 213.4 236 53.0
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 2.9e-53 212.6 229 50.2
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 6.5e-53 211.5 221 53.4
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 8.5e-53 211.1 155 68.4
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 8.5e-53 211.1 204 57.8
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 1.1e-52 210.7 186 58.1
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 1.5e-52 210.3 201 56.2
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 1.5e-52 210.3 240 51.7
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 2.5e-52 209.5 227 52.4
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 2.5e-52 209.5 232 51.7
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 2.5e-52 209.5 228 50.0
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 1.6e-51 206.8 240 50.4
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 2.7e-51 206.1 228 49.6
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 3.6e-51 205.7 234 49.6
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 8.0e-51 204.5 224 50.0
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 1.0e-50 204.1 225 51.6
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 1.0e-50 204.1 221 51.1
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 1.0e-50 204.1 221 51.1
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 1.4e-50 203.8 227 49.8
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 2.3e-50 203.0 231 48.5
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 6.8e-50 201.4 209 50.7
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 8.8e-50 201.1 222 50.9
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 8.8e-50 201.1 223 51.1
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 1.2e-49 200.7 214 52.8
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 7.5e-49 198.0 216 49.5
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 7.5e-49 198.0 150 63.3
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 9.8e-49 197.6 226 46.9
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 2.2e-48 196.4 223 49.8
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 2.2e-48 196.4 219 48.4
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 2.8e-48 196.1 204 52.5
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 2.8e-48 196.1 222 48.2
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 2.8e-48 196.1 229 47.2
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 4.9e-48 195.3 222 48.2
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 4.9e-48 195.3 253 47.8
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 4.9e-48 195.3 238 46.6
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 8.3e-48 194.5 236 45.8
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 1.4e-47 193.7 202 52.0
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 1.8e-47 193.4 234 45.7
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 3.1e-47 192.6 240 45.4
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 4.1e-47 192.2 236 45.3
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 7.0e-47 191.4 229 47.2
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 1.2e-46 190.7 219 47.5
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 1.2e-46 190.7 219 47.5
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 1.2e-46 190.7 221 50.2
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 1.6e-46 190.3 228 50.0
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 2.0e-46 189.9 217 48.4
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 2.7e-46 189.5 223 48.4
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.7e-46 189.5 246 44.3
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 7.7e-46 188.0 214 49.1
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 7.7e-46 188.0 204 50.5
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 1.0e-45 187.6 151 58.9
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.7e-45 186.8 203 49.8
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 2.9e-45 186.0 231 45.9
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 3.8e-45 185.7 202 50.0
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 3.8e-45 185.7 213 45.5
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 6.6e-45 184.9 225 45.8
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 6.6e-45 184.9 154 59.1
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 8.6e-45 184.5 204 50.0
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 1.5e-44 183.7 214 45.3
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 1.9e-44 183.3 231 46.8
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 3.3e-44 182.6 225 45.3
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 5.6e-44 181.8 222 47.3
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 5.6e-44 181.8 214 48.1
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 7.3e-44 181.4 200 48.0
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 7.3e-44 181.4 226 44.7
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 7.3e-44 181.4 216 45.8
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 9.5e-44 181.0 225 46.7
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 9.5e-44 181.0 229 46.3
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 2.1e-43 179.9 215 48.8
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 2.8e-43 179.5 227 45.8
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 2.8e-43 179.5 228 47.4
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 3.6e-43 179.1 131 65.6
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 4.7e-43 178.7 223 46.6
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 4.7e-43 178.7 227 44.9
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 8.0e-43 177.9 231 45.0
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 8.0e-43 177.9 214 48.6
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 4.0e-42 175.6 149 55.7
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 3.4e-41 172.6 241 41.1
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 9.8e-41 171.0 245 40.8
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 1.3e-40 170.6 221 47.5
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 2.2e-40 169.9 177 54.8
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 1.2e-38 164.1 146 56.2
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 2.7e-38 162.9 247 40.9
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 7.8e-38 161.4 163 50.3
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 1.3e-37 160.6 217 42.9
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.7e-37 160.2 223 43.0
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 1.7e-37 160.2 204 44.1
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 2.3e-37 159.8 237 40.5
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.8e-34 150.2 143 52.4
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 3.4e-33 146.0 129 56.6
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 5.8e-33 145.2 222 40.1
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 2.9e-32 142.9 233 39.1
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 4.9e-32 142.1 139 53.2
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 2.3e-29 133.3 234 41.9
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 1.1e-23 114.4 144 44.4
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 3.5e-22 109.4 216 34.3
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 2.6e-17 93.2 135 43.0
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 4.9e-16 89.0 66 62.1
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 1.1e-15 87.8 56 64.3
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 1.3e-13 80.9 141 39.0
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 1.3e-13 80.9 54 61.1
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 3.0e-13 79.7 52 63.5
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 2.5e-12 76.6 111 41.4
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 1.5e-09 67.4 70 45.7
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 2.6e-09 66.6 83 42.2
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 2.6e-09 66.6 70 48.6
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 2.6e-09 66.6 65 49.2
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 8.4e-08 61.6 66 47.0
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.2e-06 57.8 76 43.4
Hund30245 Selenicereus undatus HOM05D004719 ORTHO05D005519 4.6e-06 55.8 108 39.8


User provided reference genes

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