Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 5.4e-224 780.8 424 100.0
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 4.2e-120 435.6 427 62.8
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 7.2e-120 434.9 426 61.7
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.8e-118 430.3 431 60.8
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 2.8e-116 422.9 436 62.4
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 2.9e-113 412.9 426 60.6
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 1.9e-112 410.2 433 62.1
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 2.5e-112 409.8 431 57.5
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 9.4e-112 407.9 442 57.0
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 2.3e-110 403.3 446 57.6
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 4.0e-110 402.5 452 60.8
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 5.7e-109 398.7 460 55.2
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 7.5e-109 398.3 445 58.9
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 9.8e-109 397.9 433 58.0
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.3e-108 397.5 448 54.9
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.3e-108 397.5 459 54.9
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 1.7e-108 397.1 439 55.6
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 3.7e-108 396.0 459 54.7
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 6.3e-108 395.2 443 55.5
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 8.3e-108 394.8 467 57.4
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 8.3e-108 394.8 446 60.3
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 1.4e-107 394.0 469 54.2
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 3.1e-107 392.9 440 55.7
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.1e-107 392.5 457 56.2
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 5.4e-107 392.1 453 56.7
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 9.1e-107 391.3 443 59.8
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 9.1e-107 391.3 459 54.7
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.2e-106 391.0 466 57.5
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 4.5e-106 389.0 462 58.2
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.0e-105 387.9 430 56.7
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 2.9e-105 386.3 449 56.3
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 2.9e-105 386.3 450 60.2
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 2.9e-105 386.3 442 58.1
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 2.9e-105 386.3 450 57.8
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 2.9e-105 386.3 444 57.4
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 6.6e-105 385.2 453 54.5
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 1.1e-104 384.4 441 57.8
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 4.2e-104 382.5 441 54.0
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 4.2e-104 382.5 459 53.4
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 1.2e-103 380.9 462 52.6
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 3.6e-103 379.4 481 50.5
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 8.0e-103 378.3 444 55.4
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 3.0e-102 376.3 443 58.7
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 4.0e-102 375.9 438 58.4
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 5.2e-102 375.6 451 55.2
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 1.2e-101 374.4 435 54.3
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 4.4e-101 372.5 480 56.7
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 1.7e-100 370.5 441 54.6
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 2.2e-100 370.2 493 53.8
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 2.2e-100 370.2 442 52.9
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.8e-100 369.8 479 54.9
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 6.3e-100 368.6 484 53.3
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.8e-99 367.1 461 55.5
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 2.4e-99 366.7 433 51.7
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 2.4e-99 366.7 443 53.0
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 4.1e-99 365.9 441 53.5
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 9.2e-99 364.8 426 54.2
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 1.2e-98 364.4 440 51.6
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 1.6e-98 364.0 465 52.0
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 2.0e-98 363.6 460 55.2
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.5e-98 362.5 482 54.6
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 5.9e-98 362.1 489 52.1
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.7e-97 360.5 445 52.8
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.7e-97 360.5 472 54.0
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.3e-97 360.1 486 52.9
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 2.3e-97 360.1 477 52.8
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 2.9e-97 359.8 424 53.8
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 2.5e-96 356.7 486 52.7
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 3.3e-96 356.3 447 54.6
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 7.3e-96 355.1 499 50.1
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 3.6e-95 352.8 486 52.5
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.0e-94 349.4 486 52.3
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 5.2e-94 349.0 453 56.3
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 5.2e-94 349.0 504 52.6
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 1.2e-93 347.8 509 51.9
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 1.5e-93 347.4 443 52.6
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 5.8e-93 345.5 456 54.2
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 1.3e-92 344.4 441 53.7
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 2.9e-92 343.2 523 47.8
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 4.9e-92 342.4 454 52.6
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 9.2e-91 338.2 438 53.2
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 1.6e-90 337.4 419 53.2
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 6.6e-89 332.0 442 49.3
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 1.5e-88 330.9 462 48.1
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.5e-88 330.9 438 49.5
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 4.3e-88 329.3 442 53.6
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 2.1e-87 327.0 444 48.6
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 3.1e-86 323.2 436 48.4
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 8.9e-86 321.6 444 49.1
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.2e-85 321.2 450 49.1
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.2e-85 321.2 455 48.8
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 5.8e-85 318.9 445 48.3
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 1.7e-84 317.4 505 44.8
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 2.2e-84 317.0 463 49.7
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 2.9e-84 316.6 450 48.7
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 6.4e-84 315.5 451 47.5
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 8.3e-84 315.1 455 48.6
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 2.4e-83 313.5 432 51.9
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 4.6e-82 309.3 441 53.7
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 2.5e-80 303.5 485 49.5
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 3.3e-80 303.1 441 45.1
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 1.8e-78 297.4 439 51.0
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 8.9e-78 295.0 417 48.4
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 5.8e-77 292.4 396 48.5
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 1.9e-75 287.3 422 46.9
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 2.4e-75 287.0 201 75.6
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 1.0e-73 281.6 171 82.5
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 2.3e-73 280.4 414 46.4
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 3.0e-73 280.0 520 40.6
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 5.1e-73 279.3 507 46.5
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 1.6e-71 274.2 172 81.4
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 3.6e-71 273.1 465 49.9
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 6.8e-70 268.9 424 45.8
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 1.9e-67 260.8 334 49.7
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 1.2e-66 258.1 463 42.3
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 3.9e-65 253.1 369 53.9
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.3e-64 250.0 172 73.8
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 2.2e-60 237.3 375 45.3
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 6.2e-55 219.2 450 40.7
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 6.2e-55 219.2 325 46.5
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 2.4e-54 217.2 366 47.5
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.3e-52 211.5 128 81.2
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 2.3e-49 200.7 390 39.5
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 4.3e-48 196.4 496 36.3
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 1.5e-45 188.0 172 62.2
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.1e-38 163.7 337 42.4
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 1.2e-37 161.8 158 52.5
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 2.1e-34 151.0 427 34.7
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 5.7e-32 142.9 236 39.0
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 9.0e-30 135.6 396 35.6
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 5.9e-29 132.9 147 45.6
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 5.1e-25 119.8 65 92.3
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 5.7e-24 116.3 73 71.2
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 1.3e-23 115.2 157 51.0
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 7.2e-19 99.4 97 56.7
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 5.7e-16 89.7 166 36.7
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 1.3e-15 88.6 126 43.7
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 2.8e-15 87.4 127 44.9
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.8e-15 86.7 88 56.8
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 9.1e-14 82.4 111 51.4
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 5.9e-13 79.7 75 53.3
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 2.2e-12 77.8 49 75.5
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 8.5e-12 75.9 402 27.6
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 8.5e-12 75.9 402 27.6
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 1.8e-09 68.2 93 52.7
ECA238G0891 Erigeron canadensis HOM05D000230 ORTHO05D000176 4.1e-06 57.0 139 24.5


User provided reference genes

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