Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_747.g21447 Utricularia gibba HOM05D001129 ORTHO05D013941 1.8e-64 249.2 138 100.0
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 8.3e-17 90.9 60 73.3
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 4.1e-16 88.6 47 83.0
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 9.2e-16 87.4 56 73.2
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 1.2e-15 87.0 86 59.3
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 2.0e-15 86.3 47 78.7
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 3.5e-15 85.5 60 68.3
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 4.6e-15 85.1 53 73.6
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 4.6e-15 85.1 47 80.9
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 4.6e-15 85.1 50 80.0
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 6.0e-15 84.7 61 68.9
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 6.0e-15 84.7 61 68.9
Actinidia25195 Actinidia chinensis HOM05D001129 ORTHO05D013941 7.8e-15 84.3 59 69.5
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 7.8e-15 84.3 48 75.0
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 1.7e-14 83.2 48 75.0
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 1.7e-14 83.2 60 65.0
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 5.0e-14 81.6 47 76.6
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 6.6e-14 81.3 58 63.8
Lj2P1101T48 Lonicera japonica HOM05D001129 ORTHO05D013941 8.6e-14 80.9 53 67.9
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 1.5e-13 80.1 49 77.6
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 2.5e-13 79.3 60 65.0
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 3.3e-13 79.0 79 53.2
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 3.3e-13 79.0 45 77.8
Hund05051 Selenicereus undatus HOM05D001129 ORTHO05D003814 7.3e-13 77.8 44 77.3
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 9.5e-13 77.4 49 73.5
ClCG02G019050 Citrullus lanatus HOM05D001129 ORTHO05D003814 1.2e-12 77.0 47 78.7
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 2.8e-12 75.9 60 61.7
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 3.6e-12 75.5 47 74.5
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 3.6e-12 75.5 60 61.7
CAN.G3.32 Capsicum annuum HOM05D000185 ORTHO05D000105 6.2e-12 74.7 47 68.1
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 6.2e-12 74.7 43 74.4
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 6.2e-12 74.7 53 71.7
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 8.1e-12 74.3 56 60.7
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 8.1e-12 74.3 46 73.9
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 8.1e-12 74.3 42 81.0
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 1.4e-11 73.6 43 79.1
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 1.4e-11 73.6 49 73.5
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 1.4e-11 73.6 53 64.2
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 2.3e-11 72.8 59 61.0
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 2.3e-11 72.8 46 76.1
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 3.1e-11 72.4 41 78.0
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 4.0e-11 72.0 71 56.3
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 4.0e-11 72.0 71 56.3
Nitab4.5_0002620g0020 Nicotiana tabacum HOM05D001129 ORTHO05D003814 4.0e-11 72.0 44 68.2
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 5.2e-11 71.6 64 59.4
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 5.2e-11 71.6 55 61.8
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 5.2e-11 71.6 48 68.8
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 5.2e-11 71.6 49 71.4
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 5.2e-11 71.6 49 71.4
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 5.2e-11 71.6 49 71.4
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 5.2e-11 71.6 61 59.0
RcHm_v2.0_Chr5g0072931 Rosa chinensis HOM05D001129 ORTHO05D003814 5.2e-11 71.6 57 59.6
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 6.8e-11 71.2 48 66.7
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 6.8e-11 71.2 44 70.5
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 8.9e-11 70.9 54 66.7
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 8.9e-11 70.9 53 58.5
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 8.9e-11 70.9 40 77.5
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 1.2e-10 70.5 48 66.7
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 1.2e-10 70.5 42 78.6
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 1.2e-10 70.5 42 76.2
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 1.5e-10 70.1 42 73.8
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 1.5e-10 70.1 58 60.3
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.5e-10 70.1 58 60.3
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 1.5e-10 70.1 58 60.3
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 1.5e-10 70.1 42 73.8
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 1.5e-10 70.1 60 56.7
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 2.0e-10 69.7 41 75.6
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 2.0e-10 69.7 41 75.6
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 2.0e-10 69.7 41 75.6
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 2.0e-10 69.7 41 75.6
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 2.0e-10 69.7 51 60.8
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 2.6e-10 69.3 40 72.5
CiPaw.13G064200 Carya illinoinensis HOM05D001129 ORTHO05D003814 3.4e-10 68.9 44 70.5
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 3.4e-10 68.9 54 55.6
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 4.4e-10 68.6 47 70.2
BcaC07g42543 Brassica carinata HOM05D001129 ORTHO05D003814 7.5e-10 67.8 49 63.3
BcaC07g42547 Brassica carinata HOM05D001129 ORTHO05D003814 7.5e-10 67.8 49 63.3
FvH4_3g40411 Fragaria vesca HOM05D001129 ORTHO05D013941 7.5e-10 67.8 52 59.6
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 7.5e-10 67.8 44 63.6
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 7.5e-10 67.8 44 63.6
RcHm_v2.0_Chr5g0073071 Rosa chinensis HOM05D001129 ORTHO05D003814 9.8e-10 67.4 88 42.0
TPR.G27384 Trifolium pratense HOM05D001129 ORTHO05D003814 9.8e-10 67.4 60 58.3
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 1.3e-09 67.0 80 48.8
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 1.3e-09 67.0 52 57.7
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 1.3e-09 67.0 40 67.5
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 1.7e-09 66.6 40 70.0
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 1.7e-09 66.6 57 56.1
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 2.2e-09 66.2 49 65.3
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 2.2e-09 66.2 45 73.3
RcHm_v2.0_Chr5g0072811 Rosa chinensis HOM05D001129 ORTHO05D013941 2.2e-09 66.2 51 66.7
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 2.9e-09 65.9 51 54.9
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.9e-09 65.9 51 54.9
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.9e-09 65.9 51 54.9
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 2.9e-09 65.9 39 66.7
BcaB03g13434 Brassica carinata HOM05D001129 ORTHO05D013941 4.9e-09 65.1 54 57.4
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 4.9e-09 65.1 41 70.7
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 4.9e-09 65.1 56 58.9
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.9e-09 65.1 36 83.3
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.9e-09 65.1 36 83.3
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 6.4e-09 64.7 41 70.7
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 6.4e-09 64.7 41 70.7
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 6.4e-09 64.7 50 64.0
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 8.3e-09 64.3 42 66.7
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 8.3e-09 64.3 42 66.7
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 8.3e-09 64.3 50 66.0
Aqoxy5G03056 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 1.1e-08 63.9 41 61.0
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 1.1e-08 63.9 41 68.3
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 1.4e-08 63.5 48 60.4
FAN21G2900 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.4e-08 63.5 44 61.4
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 1.4e-08 63.5 50 64.0
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 1.9e-08 63.2 41 65.9
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.9e-08 63.2 41 65.9
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.9e-08 63.2 41 65.9
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 2.4e-08 62.8 37 75.7
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 2.4e-08 62.8 59 50.8
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.7e-07 59.3 42 57.1
FAN13G0243 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.6e-07 58.5 41 58.5
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 7.8e-07 57.8 37 62.2
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 7.8e-07 57.8 37 62.2
CBR_g27959 Chara braunii HOM05D001129 ORTHO05D003814 8.6e-06 54.3 48 56.2


User provided reference genes

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