Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001129', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '546', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p12490' => 'bna', 'A02p38070' => 'bna', 'A02p38190' => 'bna', 'A03p17810' => 'bna', 'A03p23440' => 'bna', 'A04p03100' => 'bna', 'A05p02530' => 'bna', 'A07p23430' => 'bna', 'A08p35850' => 'bna', 'A09p15610' => 'bna', 'A09p50340' => 'bna', 'A09p66710' => 'bna', 'A10p05450' => 'bna', 'Aa31LG10G12300' => 'aar', 'Aa31LG10G12310' => 'aar', 'Aa31LG1G23800' => 'aar', 'Aa31LG1G7970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1876' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.374' => 'aag', 'Actinidia09332' => 'ach', 'Actinidia09335' => 'ach', 'Actinidia09336' => 'ach', 'Actinidia11621' => 'ach', 'Actinidia11622' => 'ach', 'Actinidia25195' => 'ach', 'Actinidia25196' => 'ach', 'Ah.04g151760' => 'amhyb', 'AL1G16920' => 'aly', 'AL2G24780' => 'aly', 'AL4G12810' => 'aly', 'AL4G12820' => 'aly', 'AL4G39880' => 'aly', 'AL4G39890' => 'aly', 'AL4G40110' => 'aly', 'AL5G39030' => 'aly', 'AL5G39040' => 'aly', 'AL5G39050' => 'aly', 'AL7G46910' => 'aly', 'AL7G53150' => 'aly', 'Aqoxy1G00256' => 'aox', 'Aqoxy2G00701' => 'aox', 'Aqoxy5G03056' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1AE9PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2WDVD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA8THR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP07WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9HJFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V41UA4' => 'arhy', 'AT1G06900' => 'ath', 'AT2G41790' => 'ath', 'AT3G57460' => 'ath', 'AT3G57465' => 'ath', 'AT3G57470' => 'ath', 'AT5G01440' => 'ath', 'ATR0020G001' => 'atr', 'ATR0332G050' => 'atr', 'ATR0332G087' => 'atr', 'ATR0332G094' => 'atr', 'ATR0693G250' => 'atr', 'ATR0967G001' => 'atr', 'ATR1127G095' => 'atr', 'Atru.chr1.1085' => 'acertr', 'Atru.chr1.2504' => 'acertr', 'Atru.chr6.462' => 'acertr', 'AUR62009732' => 'cqu', 'AUR62024444' => 'cqu', 'AUR62026034' => 'cqu', 'AUR62036212' => 'cqu', 'BcaB02g06767' => 'bca', 'BcaB02g07601' => 'bca', 'BcaB02g07602' => 'bca', 'BcaB02g08315' => 'bca', 'BcaB03g13434' => 'bca', 'BcaB04g19613' => 'bca', 'BcaC02g09940' => 'bca', 'BcaC02g12494' => 'bca', 'BcaC03g17727' => 'bca', 'BcaC05g24658' => 'bca', 'BcaC07g40376' => 'bca', 'BcaC07g42040' => 'bca', 'BcaC07g42543' => 'bca', 'BcaC07g42547' => 'bca', 'BcaC08g44840' => 'bca', 'BcaC08g44841' => 'bca', 'BcaC08g44846' => 'bca', 'BcaC09g48997' => 'bca', 'BcaNung02836' => 'bca', 'BcaNung06244' => 'bca', 'BcaNung06830' => 'bca', 'BolC1t01799H' => 'bol', 'BolC1t01800H' => 'bol', 'BolC1t04327H' => 'bol', 'BolC1t04328H' => 'bol', 'BolC2t11804H' => 'bol', 'BolC2t11808H' => 'bol', 'BolC2t11810H' => 'bol', 'BolC4t21939H' => 'bol', 'BolC4t25051H' => 'bol', 'BolC5t29275H' => 'bol', 'BolC6t37595H' => 'bol', 'BolC6t37600H' => 'bol', 'BolC6t37601H' => 'bol', 'BolC8t50901H' => 'bol', 'BolC8t52622H' => 'bol', 'BolC9t53447H' => 'bol', 'BraA02t08792Z' => 'bra', 'BraA02t08796Z' => 'bra', 'BraA04t16033Z' => 'bra', 'BraA05t19246Z' => 'bra', 'BraA08t35492Z' => 'bra', 'BraA09t40487Z' => 'bra', 'BraA09t42010Z' => 'bra', 'BraA10t42809Z' => 'bra', 'C01p18720' => 'bna', 'C01p43680' => 'bna', 'C01p43690' => 'bna', 'C02p57350' => 'bna', 'C02p57360' => 'bna', 'C03p27960' => 'bna', 'C04p02990' => 'bna', 'C04p34960' => 'bna', 'C05p05030' => 'bna', 'C06p09320' => 'bna', 'C06p24480' => 'bna', 'C06p24520' => 'bna', 'C06p24530' => 'bna', 'C08p02730' => 'bna', 'C08p33010' => 'bna', 'C08p50940' => 'bna', 'CAN.G3.33' => 'can', 'CAN.G676.66' => 'can', 'CAN.G676.67' => 'can', 'CANSAT54G2955' => 'cansat', 'CANSAT80G2109' => 'cansat', 'CARHR006570' => 'chi', 'CARHR136870' => 'chi', 'CARHR167660' => 'chi', 'CARHR167670' => 'chi', 'CARHR167690' => 'chi', 'Carub.0001s0619' => 'cru', 'Carub.0004s0428' => 'cru', 'Carub.0004s2406' => 'cru', 'Carub.0005s2430' => 'cru', 'Carub.0005s2431' => 'cru', 'Ca_08459_v3' => 'car', 'Ca_13897_v3' => 'car', 'Ca_15041_v3' => 'car', 'Ca_23248_v3' => 'car', 'Ca_28606_v3' => 'car', 'Ca_30053_v3' => 'car', 'CBR_g12082' => 'cbr', 'CBR_g27959' => 'cbr', 'CBR_g45246' => 'cbr', 'CBR_g49619' => 'cbr', 'CBR_g49621' => 'cbr', 'Cc00_g06010' => 'ccan', 'Cc00_g10010' => 'ccan', 'Cc01_g15280' => 'ccan', 'Cc03_g06630' => 'ccan', 'Cc06_g17050' => 'ccan', 'Cc06_g17060' => 'ccan', 'CDE05G3018' => 'cde', 'CDE05G3167' => 'cde', 'CDE06G0445' => 'cde', 'Cfa011826' => 'cfa', 'Cfa016822' => 'cfa', 'Cfa023906' => 'cfa', 'Ciclev10000133m.g' => 'ccl', 'Ciclev10004240m.g' => 'ccl', 'Ciclev10004250m.g' => 'ccl', 'CiPaw.09G037700' => 'cil', 'CiPaw.10G033100' => 'cil', 'CiPaw.13G064200' => 'cil', 'ClCG02G019050' => 'cla', 'ClCG10G016980' => 'cla', 'COL.COLO4_06002' => 'col', 'COL.COLO4_11207' => 'col', 'COL.COLO4_13216' => 'col', 'COL.COLO4_28264' => 'col', 'COL.COLO4_28268' => 'col', 'COL.COLO4_28275' => 'col', 'Cpa.g.sc2.304' => 'cpa', 'Cpa.g.sc2.305' => 'cpa', 'Cpa.g.sc92.47' => 'cpa', 'Cre01.g034100' => 'cre', 'Cre01.g041855' => 'cre', 'Cre09.g386113' => 'cre', 'CsaV3_3G039410' => 'csa', 'CsaV3_6G019170' => 'csa', 'CSS0010940' => 'camsi', 'CSS0019735' => 'camsi', 'DCAR_004800' => 'dca', 'DCAR_020490' => 'dca', 'Dinv00382' => 'din', 'Dinv12479' => 'din', 'Dinv28728' => 'din', 'Dinv39591' => 'din', 'Dinv39593' => 'din', 'Dinv39598' => 'din', 'Duzib093G0063' => 'dzi', 'Duzib093G0335' => 'dzi', 'Duzib093G1038' => 'dzi', 'Duzib128G1487' => 'dzi', 'Duzib168G0079' => 'dzi', 'ECA247G0490' => 'eca', 'ECA247G0660' => 'eca', 'ECA247G0911' => 'eca', 'EL10Ac3g07087' => 'bvu', 'EL10Ac7g15852' => 'bvu', 'Eucgr.A02352' => 'egr', 'Eucgr.A02354' => 'egr', 'Eucgr.A02355' => 'egr', 'Eucgr.A02357' => 'egr', 'Eucgr.A02358' => 'egr', 'Eucgr.A02359' => 'egr', 'Eucgr.B04025' => 'egr', 'Eucgr.C03112' => 'egr', 'Eucgr.H02814' => 'egr', 'FAN01G1484' => 'fan', 'FAN02G2306' => 'fan', 'FAN04G0733' => 'fan', 'FAN05G4515' => 'fan', 'FAN06G3753' => 'fan', 'FAN08G0077' => 'fan', 'FAN09G1141' => 'fan', 'FAN11G1991' => 'fan', 'FAN11G2052' => 'fan', 'FAN11G2940' => 'fan', 'FAN11G3836' => 'fan', 'FAN13G0243' => 'fan', 'FAN13G1906' => 'fan', 'FAN13G3149' => 'fan', 'FAN16G0023' => 'fan', 'FAN16G3400' => 'fan', 'FAN18G1906' => 'fan', 'FAN18G3567' => 'fan', 'FAN21G2271' => 'fan', 'FAN21G2900' => 'fan', 'FvH4_3g40361' => 'fve', 'FvH4_3g40370' => 'fve', 'FvH4_3g40391' => 'fve', 'FvH4_3g40410' => 'fve', 'FvH4_3g40411' => 'fve', 'FvH4_3g40412' => 'fve', 'FvH4_3g40413' => 'fve', 'FvH4_3g40440' => 'fve', 'FvH4_3g41040' => 'fve', 'FvH4_5g00310' => 'fve', 'FvH4_6g23690' => 'fve', 'Glyma.03G137100' => 'gma', 'Glyma.11G160300' => 'gma', 'Glyma.18G053700' => 'gma', 'Glyma.19G139800' => 'gma', 'Gohir.A01G131400' => 'ghi', 'Gohir.A01G131500' => 'ghi', 'Gohir.A03G023300' => 'ghi', 'Gohir.A08G164850' => 'ghi', 'Gohir.D01G120700' => 'ghi', 'Gohir.D03G054201' => 'ghi', 'Gohir.D03G145400' => 'ghi', 'Gohir.D07G130166' => 'ghi', 'Gohir.D08G133750' => 'ghi', 'Gohir.D09G013866' => 'ghi', 'Gohir.D09G051901' => 'ghi', 'Gohir.D10G086832' => 'ghi', 'Gohir.D11G291701' => 'ghi', 'Gorai.001G201100' => 'gra', 'Gorai.002G147300' => 'gra', 'Gorai.002G147500' => 'gra', 'Gorai.003G152500' => 'gra', 'Gorai.006G004900' => 'gra', 'Gorai.007G260700' => 'gra', 'Gorai.009G402100' => 'gra', 'Gorai.009G417200' => 'gra', 'Gorai.011G096400' => 'gra', 'Gorai.012G121300' => 'gra', 'GSVIVG01024571001' => 'vvi', 'GSVIVG01033283001' => 'vvi', 'GSVIVG01033284001' => 'vvi', 'HanXRQChr08g0230671' => 'han', 'HanXRQChr10g0289411' => 'han', 'Haze_16414' => 'cav', 'Haze_16417' => 'cav', 'Haze_16419' => 'cav', 'Haze_19863' => 'cav', 'Haze_19866' => 'cav', 'Haze_24463' => 'cav', 'Hma1.2p1_0170F.1_g075000' => 'hma', 'Hma1.2p1_1168F.1_g263180' => 'hma', 'Hma1.2p1_1168F.1_g263190' => 'hma', 'HPP92_006786' => 'vpl', 'HPP92_006787' => 'vpl', 'HPP92_006788' => 'vpl', 'HPP92_007503' => 'vpl', 'HPP92_015907' => 'vpl', 'HPP92_015909' => 'vpl', 'HPP92_015932' => 'vpl', 'HPP92_027671' => 'vpl', 'HPP92_028209' => 'vpl', 'Hund05051' => 'sun', 'Hund19150' => 'sun', 'Hund24708' => 'sun', 'Lalb_Chr01g0017291' => 'lal', 'Lalb_Chr18g0054261' => 'lal', 'Lj1g0001320' => 'lja', 'Lj2C1101T10' => 'lonja', 'Lj2C384T5' => 'lonja', 'Lj2C384T6' => 'lonja', 'Lj2P1101T48' => 'lonja', 'Lj4g0007497' => 'lja', 'Lj6g0006618' => 'lja', 'Lju124C40G7' => 'lonja', 'Lsat_1_v5_gn_4_182701' => 'lsa', 'Lsat_1_v5_gn_4_78000' => 'lsa', 'Lsat_1_v5_gn_6_8680' => 'lsa', 'Lsat_1_v5_gn_6_8700' => 'lsa', 'Lsat_1_v5_gn_7_58040' => 'lsa', 'Lsat_1_v5_gn_9_13880' => 'lsa', 'Lsat_1_v5_gn_9_28860' => 'lsa', 'Manes.02G208660' => 'mes', 'Manes.08G050900' => 'mes', 'Manes.09G021401' => 'mes', 'Manes.09G021500' => 'mes', 'Mapoly0021s0007' => 'mpo', 'Mapoly0029s0118' => 'mpo', 'MBI02_g23135_MAGBIO' => 'mbi', 'MCO11G812' => 'mco', 'MD03G1052300' => 'mdo', 'MD09G1162200' => 'mdo', 'MD09G1162300' => 'mdo', 'MD10G1074700' => 'mdo', 'MD11G1054400' => 'mdo', 'MD12G1073300' => 'mdo', 'MD14G1071400' => 'mdo', 'MD14G1071600' => 'mdo', 'MD17G1069300' => 'mdo', 'Medtr3g466820' => 'mtr', 'Medtr5g095180' => 'mtr', 'Medtr7g057410' => 'mtr', 'Medtr7g091590' => 'mtr', 'MELO3C009685.2' => 'cme', 'MELO3C026877.2' => 'cme', 'Migut.D00820' => 'egut', 'Migut.J01762' => 'egut', 'MSTRG.18541' => 'ama', 'MSTRG.6511' => 'ama', 'MSTRG.6512' => 'ama', 'MSTRG.6516' => 'ama', 'MSTRG.6517' => 'ama', 'Nitab4.5_0000002g0190' => 'nta', 'Nitab4.5_0000733g0020' => 'nta', 'Nitab4.5_0000733g0050' => 'nta', 'Nitab4.5_0002620g0020' => 'nta', 'Nitab4.5_0005611g0030' => 'nta', 'Nitab4.5_0005611g0040' => 'nta', 'Nn2g10322' => 'nnu', 'Nn7g36265' => 'nnu', 'Nn7g36269' => 'nnu', 'Oeu000828.1' => 'oeu', 'Oeu015568.1' => 'oeu', 'Oeu015569.1' => 'oeu', 'Oeu055223.1' => 'oeu', 'Os01g0778800' => 'osa', 'Os01g0779100' => 'osa', 'Os03g0336300' => 'osa', 'Os07g0570100' => 'osa', 'Os07g0570300' => 'osa', 'Os07g0570500' => 'osa', 'Peaxi162Scf00044g01412' => 'pax', 'Peaxi162Scf00493g00005' => 'pax', 'Peaxi162Scf00960g00119' => 'pax', 'Peaxi162Scf00960g00120' => 'pax', 'PGR004G1628' => 'pgr', 'PGR004G1973' => 'pgr', 'PGR004G1988' => 'pgr', 'PGR004G2267' => 'pgr', 'PGR102G0317' => 'pgr', 'PGSC0003DMG400027247' => 'stu', 'PGSC0003DMG401027248' => 'stu', 'PGSC0003DMG402027248' => 'stu', 'Phvul.001G133200' => 'pvu', 'Phvul.006G077500' => 'pvu', 'Potri.006G050700' => 'ptr', 'Potri.013G154600' => 'ptr', 'Pp3c10_5860' => 'ppa', 'Pp3c14_4240' => 'ppa', 'Pp3c14_4243' => 'ppa', 'Pp3c16_8340' => 'ppa', 'Pp3c1_4220' => 'ppa', 'Pp3c5_6610' => 'ppa', 'Pp3c5_8950' => 'ppa', 'PRCOL_00003896' => 'pco', 'PRCOL_00006552' => 'pco', 'Prupe.6G041800' => 'ppe', 'Prupe.6G041900' => 'ppe', 'Prupe.7G061600' => 'ppe', 'Psat0s427g0040' => 'psa', 'Psat0s475g0040' => 'psa', 'Psat0s475g0080' => 'psa', 'Psat0s475g0120' => 'psa', 'Psat0s4995g0040' => 'psa', 'Psat0s6682g0040' => 'psa', 'Psat0s6682g0080' => 'psa', 'Psat0s6868g0120' => 'psa', 'Psat1g112160' => 'psa', 'Psat1g114160' => 'psa', 'Psat1g135520' => 'psa', 'Psat2g172400' => 'psa', 'Psat3g072640' => 'psa', 'Psat3g160720' => 'psa', 'Psat4g066560' => 'psa', 'Psat5g028240' => 'psa', 'Psat5g149400' => 'psa', 'PSO339G0703' => 'pso', 'PSO339G2454' => 'pso', 'PSO384G2839' => 'pso', 'PSO384G4550' => 'pso', 'PSO384G4551' => 'pso', 'PSO478G2702' => 'pso', 'QL01p024916' => 'qlo', 'RcHm_v2.0_Chr1g0321501' => 'rch', 'RcHm_v2.0_Chr1g0322391' => 'rch', 'RcHm_v2.0_Chr1g0322401' => 'rch', 'RcHm_v2.0_Chr1g0322811' => 'rch', 'RcHm_v2.0_Chr1g0333061' => 'rch', 'RcHm_v2.0_Chr1g0333071' => 'rch', 'RcHm_v2.0_Chr1g0333081' => 'rch', 'RcHm_v2.0_Chr1g0333871' => 'rch', 'RcHm_v2.0_Chr1g0333951' => 'rch', 'RcHm_v2.0_Chr1g0334011' => 'rch', 'RcHm_v2.0_Chr1g0334021' => 'rch', 'RcHm_v2.0_Chr1g0334031' => 'rch', 'RcHm_v2.0_Chr1g0334041' => 'rch', 'RcHm_v2.0_Chr1g0335131' => 'rch', 'RcHm_v2.0_Chr1g0335141' => 'rch', 'RcHm_v2.0_Chr1g0335171' => 'rch', 'RcHm_v2.0_Chr2g0132461' => 'rch', 'RcHm_v2.0_Chr2g0145491' => 'rch', 'RcHm_v2.0_Chr2g0151411' => 'rch', 'RcHm_v2.0_Chr3g0481841' => 'rch', 'RcHm_v2.0_Chr3g0482151' => 'rch', 'RcHm_v2.0_Chr3g0482171' => 'rch', 'RcHm_v2.0_Chr3g0492731' => 'rch', 'RcHm_v2.0_Chr5g0063901' => 'rch', 'RcHm_v2.0_Chr5g0072781' => 'rch', 'RcHm_v2.0_Chr5g0072791' => 'rch', 'RcHm_v2.0_Chr5g0072801' => 'rch', 'RcHm_v2.0_Chr5g0072811' => 'rch', 'RcHm_v2.0_Chr5g0072891' => 'rch', 'RcHm_v2.0_Chr5g0072931' => 'rch', 'RcHm_v2.0_Chr5g0072951' => 'rch', 'RcHm_v2.0_Chr5g0073041' => 'rch', 'RcHm_v2.0_Chr5g0073051' => 'rch', 'RcHm_v2.0_Chr5g0073061' => 'rch', 'RcHm_v2.0_Chr5g0073071' => 'rch', 'RcHm_v2.0_Chr5g0074151' => 'rch', 'RcHm_v2.0_Chr5g0074161' => 'rch', 'RcHm_v2.0_Chr5g0074171' => 'rch', 'RcHm_v2.0_Chr6g0278561' => 'rch', 'RcHm_v2.0_Chr7g0202261' => 'rch', 'Rhsim03G0021400' => 'rsi', 'Rhsim03G0022100' => 'rsi', 'Rhsim03G0023500' => 'rsi', 'Rhsim13G0059900' => 'rsi', 'Sabra06G0035400' => 'sbr', 'Sabra13G0124500' => 'sbr', 'SalBow1G3107' => 'sbo', 'SalBow6G0410' => 'sbo', 'Sc06g0008100' => 'sci', 'Sc13g0001790' => 'sci', 'Sed0017574' => 'sed', 'Sed0019452' => 'sed', 'SEGI_02273' => 'sgi', 'SEGI_03863' => 'sgi', 'SEGI_04230' => 'sgi', 'SEGI_13690' => 'sgi', 'SEGI_13924' => 'sgi', 'SEGI_15745' => 'sgi', 'SEGI_18924' => 'sgi', 'SEGI_27991' => 'sgi', 'SEGI_30209' => 'sgi', 'SEGI_32700' => 'sgi', 'SEGI_36312' => 'sgi', 'SEGI_39007' => 'sgi', 'SGA_v2.0_scaffold20G09290' => 'sas', 'SGA_v2.0_scaffold69G23113' => 'sas', 'SHI11186' => 'shi', 'SMO239G0088' => 'smo', 'SMO337G0024' => 'smo', 'Solyc02g043860.3' => 'sly', 'Solyc04g015680.3' => 'sly', 'Solyc04g015690.4' => 'sly', 'Solyc09g055740.1' => 'sly', 'Sopen02g007490' => 'spe', 'Sopen04g007760' => 'spe', 'Sopen04g007770' => 'spe', 'Sp1g05610' => 'spa', 'Sp4g24050' => 'spa', 'Sp5g05130' => 'spa', 'Sp5g05140' => 'spa', 'TAR369G1057' => 'tar', 'TAR623G0919' => 'tar', 'TAR633G2160' => 'tar', 'TAR636G3238' => 'tar', 'THA.LOC104800786' => 'tha', 'THA.LOC104802114' => 'tha', 'THA.LOC104824443' => 'tha', 'Thecc.05G154200' => 'tca', 'Thecc.05G154400' => 'tca', 'Thecc.05G154700' => 'tca', 'Thecc.05G155200' => 'tca', 'Thecc.09G363300' => 'tca', 'Thhalv10005770m.g' => 'esa', 'Thhalv10006660m.g' => 'esa', 'Thhalv10009720m.g' => 'esa', 'Thhalv10016187m.g' => 'esa', 'TPR.G24864' => 'tpr', 'TPR.G27380' => 'tpr', 'TPR.G27384' => 'tpr', 'TPR.G29243' => 'tpr', 'TPR.G29646' => 'tpr', 'TPR.G36357' => 'tpr', 'TPR.G3704' => 'tpr', 'TPR.G3719' => 'tpr', 'TPR.G39257' => 'tpr', 'TPR.G39949' => 'tpr', 'TPR.G928' => 'tpr', 'TWI74G0219' => 'twi', 'TWI79G0222' => 'twi', 'unitig_22.g6039' => 'ugi', 'unitig_747.g21447' => 'ugi', 'unitig_747.g21448' => 'ugi', 'vmacro02881' => 'vma', 'vmacro07856' => 'vma', 'vmacro07857' => 'vma', 'vmacro07858' => 'vma', 'vmacro07859' => 'vma', 'vmacro07860' => 'vma', 'vmacro07861' => 'vma', 'vmacro22459' => 'vma', 'VMungo0540G0021' => 'vmu', 'VMungo1383G1826' => 'vmu', 'Zm00001eb151510' => 'zma', 'Zm00001eb324850' => 'zma', 'Zm00001eb369900' => 'zma', 'Zm00001eb395090' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001129', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001129' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001129', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '546', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001129' ) ), 'genes' => array( 'A01p12490' => 'bna', 'A02p38070' => 'bna', 'A02p38190' => 'bna', 'A03p17810' => 'bna', 'A03p23440' => 'bna', 'A04p03100' => 'bna', 'A05p02530' => 'bna', 'A07p23430' => 'bna', 'A08p35850' => 'bna', 'A09p15610' => 'bna', 'A09p50340' => 'bna', 'A09p66710' => 'bna', 'A10p05450' => 'bna', 'Aa31LG10G12300' => 'aar', 'Aa31LG10G12310' => 'aar', 'Aa31LG1G23800' => 'aar', 'Aa31LG1G7970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1876' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.374' => 'aag', 'Actinidia09332' => 'ach', 'Actinidia09335' => 'ach', 'Actinidia09336' => 'ach', 'Actinidia11621' => 'ach', 'Actinidia11622' => 'ach', 'Actinidia25195' => 'ach', 'Actinidia25196' => 'ach', 'Ah.04g151760' => 'amhyb', 'AL1G16920' => 'aly', 'AL2G24780' => 'aly', 'AL4G12810' => 'aly', 'AL4G12820' => 'aly', 'AL4G39880' => 'aly', 'AL4G39890' => 'aly', 'AL4G40110' => 'aly', 'AL5G39030' => 'aly', 'AL5G39040' => 'aly', 'AL5G39050' => 'aly', 'AL7G46910' => 'aly', 'AL7G53150' => 'aly', 'Aqoxy1G00256' => 'aox', 'Aqoxy2G00701' => 'aox', 'Aqoxy5G03056' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1AE9PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2WDVD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA8THR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP07WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9HJFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V41UA4' => 'arhy', 'AT1G06900' => 'ath', 'AT2G41790' => 'ath', 'AT3G57460' => 'ath', 'AT3G57465' => 'ath', 'AT3G57470' => 'ath', 'AT5G01440' => 'ath', 'ATR0020G001' => 'atr', 'ATR0332G050' => 'atr', 'ATR0332G087' => 'atr', 'ATR0332G094' => 'atr', 'ATR0693G250' => 'atr', 'ATR0967G001' => 'atr', 'ATR1127G095' => 'atr', 'Atru.chr1.1085' => 'acertr', 'Atru.chr1.2504' => 'acertr', 'Atru.chr6.462' => 'acertr', 'AUR62009732' => 'cqu', 'AUR62024444' => 'cqu', 'AUR62026034' => 'cqu', 'AUR62036212' => 'cqu', 'BcaB02g06767' => 'bca', 'BcaB02g07601' => 'bca', 'BcaB02g07602' => 'bca', 'BcaB02g08315' => 'bca', 'BcaB03g13434' => 'bca', 'BcaB04g19613' => 'bca', 'BcaC02g09940' => 'bca', 'BcaC02g12494' => 'bca', 'BcaC03g17727' => 'bca', 'BcaC05g24658' => 'bca', 'BcaC07g40376' => 'bca', 'BcaC07g42040' => 'bca', 'BcaC07g42543' => 'bca', 'BcaC07g42547' => 'bca', 'BcaC08g44840' => 'bca', 'BcaC08g44841' => 'bca', 'BcaC08g44846' => 'bca', 'BcaC09g48997' => 'bca', 'BcaNung02836' => 'bca', 'BcaNung06244' => 'bca', 'BcaNung06830' => 'bca', 'BolC1t01799H' => 'bol', 'BolC1t01800H' => 'bol', 'BolC1t04327H' => 'bol', 'BolC1t04328H' => 'bol', 'BolC2t11804H' => 'bol', 'BolC2t11808H' => 'bol', 'BolC2t11810H' => 'bol', 'BolC4t21939H' => 'bol', 'BolC4t25051H' => 'bol', 'BolC5t29275H' => 'bol', 'BolC6t37595H' => 'bol', 'BolC6t37600H' => 'bol', 'BolC6t37601H' => 'bol', 'BolC8t50901H' => 'bol', 'BolC8t52622H' => 'bol', 'BolC9t53447H' => 'bol', 'BraA02t08792Z' => 'bra', 'BraA02t08796Z' => 'bra', 'BraA04t16033Z' => 'bra', 'BraA05t19246Z' => 'bra', 'BraA08t35492Z' => 'bra', 'BraA09t40487Z' => 'bra', 'BraA09t42010Z' => 'bra', 'BraA10t42809Z' => 'bra', 'C01p18720' => 'bna', 'C01p43680' => 'bna', 'C01p43690' => 'bna', 'C02p57350' => 'bna', 'C02p57360' => 'bna', 'C03p27960' => 'bna', 'C04p02990' => 'bna', 'C04p34960' => 'bna', 'C05p05030' => 'bna', 'C06p09320' => 'bna', 'C06p24480' => 'bna', 'C06p24520' => 'bna', 'C06p24530' => 'bna', 'C08p02730' => 'bna', 'C08p33010' => 'bna', 'C08p50940' => 'bna', 'CAN.G3.33' => 'can', 'CAN.G676.66' => 'can', 'CAN.G676.67' => 'can', 'CANSAT54G2955' => 'cansat', 'CANSAT80G2109' => 'cansat', 'CARHR006570' => 'chi', 'CARHR136870' => 'chi', 'CARHR167660' => 'chi', 'CARHR167670' => 'chi', 'CARHR167690' => 'chi', 'Carub.0001s0619' => 'cru', 'Carub.0004s0428' => 'cru', 'Carub.0004s2406' => 'cru', 'Carub.0005s2430' => 'cru', 'Carub.0005s2431' => 'cru', 'Ca_08459_v3' => 'car', 'Ca_13897_v3' => 'car', 'Ca_15041_v3' => 'car', 'Ca_23248_v3' => 'car', 'Ca_28606_v3' => 'car', 'Ca_30053_v3' => 'car', 'CBR_g12082' => 'cbr', 'CBR_g27959' => 'cbr', 'CBR_g45246' => 'cbr', 'CBR_g49619' => 'cbr', 'CBR_g49621' => 'cbr', 'Cc00_g06010' => 'ccan', 'Cc00_g10010' => 'ccan', 'Cc01_g15280' => 'ccan', 'Cc03_g06630' => 'ccan', 'Cc06_g17050' => 'ccan', 'Cc06_g17060' => 'ccan', 'CDE05G3018' => 'cde', 'CDE05G3167' => 'cde', 'CDE06G0445' => 'cde', 'Cfa011826' => 'cfa', 'Cfa016822' => 'cfa', 'Cfa023906' => 'cfa', 'Ciclev10000133m.g' => 'ccl', 'Ciclev10004240m.g' => 'ccl', 'Ciclev10004250m.g' => 'ccl', 'CiPaw.09G037700' => 'cil', 'CiPaw.10G033100' => 'cil', 'CiPaw.13G064200' => 'cil', 'ClCG02G019050' => 'cla', 'ClCG10G016980' => 'cla', 'COL.COLO4_06002' => 'col', 'COL.COLO4_11207' => 'col', 'COL.COLO4_13216' => 'col', 'COL.COLO4_28264' => 'col', 'COL.COLO4_28268' => 'col', 'COL.COLO4_28275' => 'col', 'Cpa.g.sc2.304' => 'cpa', 'Cpa.g.sc2.305' => 'cpa', 'Cpa.g.sc92.47' => 'cpa', 'Cre01.g034100' => 'cre', 'Cre01.g041855' => 'cre', 'Cre09.g386113' => 'cre', 'CsaV3_3G039410' => 'csa', 'CsaV3_6G019170' => 'csa', 'CSS0010940' => 'camsi', 'CSS0019735' => 'camsi', 'DCAR_004800' => 'dca', 'DCAR_020490' => 'dca', 'Dinv00382' => 'din', 'Dinv12479' => 'din', 'Dinv28728' => 'din', 'Dinv39591' => 'din', 'Dinv39593' => 'din', 'Dinv39598' => 'din', 'Duzib093G0063' => 'dzi', 'Duzib093G0335' => 'dzi', 'Duzib093G1038' => 'dzi', 'Duzib128G1487' => 'dzi', 'Duzib168G0079' => 'dzi', 'ECA247G0490' => 'eca', 'ECA247G0660' => 'eca', 'ECA247G0911' => 'eca', 'EL10Ac3g07087' => 'bvu', 'EL10Ac7g15852' => 'bvu', 'Eucgr.A02352' => 'egr', 'Eucgr.A02354' => 'egr', 'Eucgr.A02355' => 'egr', 'Eucgr.A02357' => 'egr', 'Eucgr.A02358' => 'egr', 'Eucgr.A02359' => 'egr', 'Eucgr.B04025' => 'egr', 'Eucgr.C03112' => 'egr', 'Eucgr.H02814' => 'egr', 'FAN01G1484' => 'fan', 'FAN02G2306' => 'fan', 'FAN04G0733' => 'fan', 'FAN05G4515' => 'fan', 'FAN06G3753' => 'fan', 'FAN08G0077' => 'fan', 'FAN09G1141' => 'fan', 'FAN11G1991' => 'fan', 'FAN11G2052' => 'fan', 'FAN11G2940' => 'fan', 'FAN11G3836' => 'fan', 'FAN13G0243' => 'fan', 'FAN13G1906' => 'fan', 'FAN13G3149' => 'fan', 'FAN16G0023' => 'fan', 'FAN16G3400' => 'fan', 'FAN18G1906' => 'fan', 'FAN18G3567' => 'fan', 'FAN21G2271' => 'fan', 'FAN21G2900' => 'fan', 'FvH4_3g40361' => 'fve', 'FvH4_3g40370' => 'fve', 'FvH4_3g40391' => 'fve', 'FvH4_3g40410' => 'fve', 'FvH4_3g40411' => 'fve', 'FvH4_3g40412' => 'fve', 'FvH4_3g40413' => 'fve', 'FvH4_3g40440' => 'fve', 'FvH4_3g41040' => 'fve', 'FvH4_5g00310' => 'fve', 'FvH4_6g23690' => 'fve', 'Glyma.03G137100' => 'gma', 'Glyma.11G160300' => 'gma', 'Glyma.18G053700' => 'gma', 'Glyma.19G139800' => 'gma', 'Gohir.A01G131400' => 'ghi', 'Gohir.A01G131500' => 'ghi', 'Gohir.A03G023300' => 'ghi', 'Gohir.A08G164850' => 'ghi', 'Gohir.D01G120700' => 'ghi', 'Gohir.D03G054201' => 'ghi', 'Gohir.D03G145400' => 'ghi', 'Gohir.D07G130166' => 'ghi', 'Gohir.D08G133750' => 'ghi', 'Gohir.D09G013866' => 'ghi', 'Gohir.D09G051901' => 'ghi', 'Gohir.D10G086832' => 'ghi', 'Gohir.D11G291701' => 'ghi', 'Gorai.001G201100' => 'gra', 'Gorai.002G147300' => 'gra', 'Gorai.002G147500' => 'gra', 'Gorai.003G152500' => 'gra', 'Gorai.006G004900' => 'gra', 'Gorai.007G260700' => 'gra', 'Gorai.009G402100' => 'gra', 'Gorai.009G417200' => 'gra', 'Gorai.011G096400' => 'gra', 'Gorai.012G121300' => 'gra', 'GSVIVG01024571001' => 'vvi', 'GSVIVG01033283001' => 'vvi', 'GSVIVG01033284001' => 'vvi', 'HanXRQChr08g0230671' => 'han', 'HanXRQChr10g0289411' => 'han', 'Haze_16414' => 'cav', 'Haze_16417' => 'cav', 'Haze_16419' => 'cav', 'Haze_19863' => 'cav', 'Haze_19866' => 'cav', 'Haze_24463' => 'cav', 'Hma1.2p1_0170F.1_g075000' => 'hma', 'Hma1.2p1_1168F.1_g263180' => 'hma', 'Hma1.2p1_1168F.1_g263190' => 'hma', 'HPP92_006786' => 'vpl', 'HPP92_006787' => 'vpl', 'HPP92_006788' => 'vpl', 'HPP92_007503' => 'vpl', 'HPP92_015907' => 'vpl', 'HPP92_015909' => 'vpl', 'HPP92_015932' => 'vpl', 'HPP92_027671' => 'vpl', 'HPP92_028209' => 'vpl', 'Hund05051' => 'sun', 'Hund19150' => 'sun', 'Hund24708' => 'sun', 'Lalb_Chr01g0017291' => 'lal', 'Lalb_Chr18g0054261' => 'lal', 'Lj1g0001320' => 'lja', 'Lj2C1101T10' => 'lonja', 'Lj2C384T5' => 'lonja', 'Lj2C384T6' => 'lonja', 'Lj2P1101T48' => 'lonja', 'Lj4g0007497' => 'lja', 'Lj6g0006618' => 'lja', 'Lju124C40G7' => 'lonja', 'Lsat_1_v5_gn_4_182701' => 'lsa', 'Lsat_1_v5_gn_4_78000' => 'lsa', 'Lsat_1_v5_gn_6_8680' => 'lsa', 'Lsat_1_v5_gn_6_8700' => 'lsa', 'Lsat_1_v5_gn_7_58040' => 'lsa', 'Lsat_1_v5_gn_9_13880' => 'lsa', 'Lsat_1_v5_gn_9_28860' => 'lsa', 'Manes.02G208660' => 'mes', 'Manes.08G050900' => 'mes', 'Manes.09G021401' => 'mes', 'Manes.09G021500' => 'mes', 'Mapoly0021s0007' => 'mpo', 'Mapoly0029s0118' => 'mpo', 'MBI02_g23135_MAGBIO' => 'mbi', 'MCO11G812' => 'mco', 'MD03G1052300' => 'mdo', 'MD09G1162200' => 'mdo', 'MD09G1162300' => 'mdo', 'MD10G1074700' => 'mdo', 'MD11G1054400' => 'mdo', 'MD12G1073300' => 'mdo', 'MD14G1071400' => 'mdo', 'MD14G1071600' => 'mdo', 'MD17G1069300' => 'mdo', 'Medtr3g466820' => 'mtr', 'Medtr5g095180' => 'mtr', 'Medtr7g057410' => 'mtr', 'Medtr7g091590' => 'mtr', 'MELO3C009685.2' => 'cme', 'MELO3C026877.2' => 'cme', 'Migut.D00820' => 'egut', 'Migut.J01762' => 'egut', 'MSTRG.18541' => 'ama', 'MSTRG.6511' => 'ama', 'MSTRG.6512' => 'ama', 'MSTRG.6516' => 'ama', 'MSTRG.6517' => 'ama', 'Nitab4.5_0000002g0190' => 'nta', 'Nitab4.5_0000733g0020' => 'nta', 'Nitab4.5_0000733g0050' => 'nta', 'Nitab4.5_0002620g0020' => 'nta', 'Nitab4.5_0005611g0030' => 'nta', 'Nitab4.5_0005611g0040' => 'nta', 'Nn2g10322' => 'nnu', 'Nn7g36265' => 'nnu', 'Nn7g36269' => 'nnu', 'Oeu000828.1' => 'oeu', 'Oeu015568.1' => 'oeu', 'Oeu015569.1' => 'oeu', 'Oeu055223.1' => 'oeu', 'Os01g0778800' => 'osa', 'Os01g0779100' => 'osa', 'Os03g0336300' => 'osa', 'Os07g0570100' => 'osa', 'Os07g0570300' => 'osa', 'Os07g0570500' => 'osa', 'Peaxi162Scf00044g01412' => 'pax', 'Peaxi162Scf00493g00005' => 'pax', 'Peaxi162Scf00960g00119' => 'pax', 'Peaxi162Scf00960g00120' => 'pax', 'PGR004G1628' => 'pgr', 'PGR004G1973' => 'pgr', 'PGR004G1988' => 'pgr', 'PGR004G2267' => 'pgr', 'PGR102G0317' => 'pgr', 'PGSC0003DMG400027247' => 'stu', 'PGSC0003DMG401027248' => 'stu', 'PGSC0003DMG402027248' => 'stu', 'Phvul.001G133200' => 'pvu', 'Phvul.006G077500' => 'pvu', 'Potri.006G050700' => 'ptr', 'Potri.013G154600' => 'ptr', 'Pp3c10_5860' => 'ppa', 'Pp3c14_4240' => 'ppa', 'Pp3c14_4243' => 'ppa', 'Pp3c16_8340' => 'ppa', 'Pp3c1_4220' => 'ppa', 'Pp3c5_6610' => 'ppa', 'Pp3c5_8950' => 'ppa', 'PRCOL_00003896' => 'pco', 'PRCOL_00006552' => 'pco', 'Prupe.6G041800' => 'ppe', 'Prupe.6G041900' => 'ppe', 'Prupe.7G061600' => 'ppe', 'Psat0s427g0040' => 'psa', 'Psat0s475g0040' => 'psa', 'Psat0s475g0080' => 'psa', 'Psat0s475g0120' => 'psa', 'Psat0s4995g0040' => 'psa', 'Psat0s6682g0040' => 'psa', 'Psat0s6682g0080' => 'psa', 'Psat0s6868g0120' => 'psa', 'Psat1g112160' => 'psa', 'Psat1g114160' => 'psa', 'Psat1g135520' => 'psa', 'Psat2g172400' => 'psa', 'Psat3g072640' => 'psa', 'Psat3g160720' => 'psa', 'Psat4g066560' => 'psa', 'Psat5g028240' => 'psa', 'Psat5g149400' => 'psa', 'PSO339G0703' => 'pso', 'PSO339G2454' => 'pso', 'PSO384G2839' => 'pso', 'PSO384G4550' => 'pso', 'PSO384G4551' => 'pso', 'PSO478G2702' => 'pso', 'QL01p024916' => 'qlo', 'RcHm_v2.0_Chr1g0321501' => 'rch', 'RcHm_v2.0_Chr1g0322391' => 'rch', 'RcHm_v2.0_Chr1g0322401' => 'rch', 'RcHm_v2.0_Chr1g0322811' => 'rch', 'RcHm_v2.0_Chr1g0333061' => 'rch', 'RcHm_v2.0_Chr1g0333071' => 'rch', 'RcHm_v2.0_Chr1g0333081' => 'rch', 'RcHm_v2.0_Chr1g0333871' => 'rch', 'RcHm_v2.0_Chr1g0333951' => 'rch', 'RcHm_v2.0_Chr1g0334011' => 'rch', 'RcHm_v2.0_Chr1g0334021' => 'rch', 'RcHm_v2.0_Chr1g0334031' => 'rch', 'RcHm_v2.0_Chr1g0334041' => 'rch', 'RcHm_v2.0_Chr1g0335131' => 'rch', 'RcHm_v2.0_Chr1g0335141' => 'rch', 'RcHm_v2.0_Chr1g0335171' => 'rch', 'RcHm_v2.0_Chr2g0132461' => 'rch', 'RcHm_v2.0_Chr2g0145491' => 'rch', 'RcHm_v2.0_Chr2g0151411' => 'rch', 'RcHm_v2.0_Chr3g0481841' => 'rch', 'RcHm_v2.0_Chr3g0482151' => 'rch', 'RcHm_v2.0_Chr3g0482171' => 'rch', 'RcHm_v2.0_Chr3g0492731' => 'rch', 'RcHm_v2.0_Chr5g0063901' => 'rch', 'RcHm_v2.0_Chr5g0072781' => 'rch', 'RcHm_v2.0_Chr5g0072791' => 'rch', 'RcHm_v2.0_Chr5g0072801' => 'rch', 'RcHm_v2.0_Chr5g0072811' => 'rch', 'RcHm_v2.0_Chr5g0072891' => 'rch', 'RcHm_v2.0_Chr5g0072931' => 'rch', 'RcHm_v2.0_Chr5g0072951' => 'rch', 'RcHm_v2.0_Chr5g0073041' => 'rch', 'RcHm_v2.0_Chr5g0073051' => 'rch', 'RcHm_v2.0_Chr5g0073061' => 'rch', 'RcHm_v2.0_Chr5g0073071' => 'rch', 'RcHm_v2.0_Chr5g0074151' => 'rch', 'RcHm_v2.0_Chr5g0074161' => 'rch', 'RcHm_v2.0_Chr5g0074171' => 'rch', 'RcHm_v2.0_Chr6g0278561' => 'rch', 'RcHm_v2.0_Chr7g0202261' => 'rch', 'Rhsim03G0021400' => 'rsi', 'Rhsim03G0022100' => 'rsi', 'Rhsim03G0023500' => 'rsi', 'Rhsim13G0059900' => 'rsi', 'Sabra06G0035400' => 'sbr', 'Sabra13G0124500' => 'sbr', 'SalBow1G3107' => 'sbo', 'SalBow6G0410' => 'sbo', 'Sc06g0008100' => 'sci', 'Sc13g0001790' => 'sci', 'Sed0017574' => 'sed', 'Sed0019452' => 'sed', 'SEGI_02273' => 'sgi', 'SEGI_03863' => 'sgi', 'SEGI_04230' => 'sgi', 'SEGI_13690' => 'sgi', 'SEGI_13924' => 'sgi', 'SEGI_15745' => 'sgi', 'SEGI_18924' => 'sgi', 'SEGI_27991' => 'sgi', 'SEGI_30209' => 'sgi', 'SEGI_32700' => 'sgi', 'SEGI_36312' => 'sgi', 'SEGI_39007' => 'sgi', 'SGA_v2.0_scaffold20G09290' => 'sas', 'SGA_v2.0_scaffold69G23113' => 'sas', 'SHI11186' => 'shi', 'SMO239G0088' => 'smo', 'SMO337G0024' => 'smo', 'Solyc02g043860.3' => 'sly', 'Solyc04g015680.3' => 'sly', 'Solyc04g015690.4' => 'sly', 'Solyc09g055740.1' => 'sly', 'Sopen02g007490' => 'spe', 'Sopen04g007760' => 'spe', 'Sopen04g007770' => 'spe', 'Sp1g05610' => 'spa', 'Sp4g24050' => 'spa', 'Sp5g05130' => 'spa', 'Sp5g05140' => 'spa', 'TAR369G1057' => 'tar', 'TAR623G0919' => 'tar', 'TAR633G2160' => 'tar', 'TAR636G3238' => 'tar', 'THA.LOC104800786' => 'tha', 'THA.LOC104802114' => 'tha', 'THA.LOC104824443' => 'tha', 'Thecc.05G154200' => 'tca', 'Thecc.05G154400' => 'tca', 'Thecc.05G154700' => 'tca', 'Thecc.05G155200' => 'tca', 'Thecc.09G363300' => 'tca', 'Thhalv10005770m.g' => 'esa', 'Thhalv10006660m.g' => 'esa', 'Thhalv10009720m.g' => 'esa', 'Thhalv10016187m.g' => 'esa', 'TPR.G24864' => 'tpr', 'TPR.G27380' => 'tpr', 'TPR.G27384' => 'tpr', 'TPR.G29243' => 'tpr', 'TPR.G29646' => 'tpr', 'TPR.G36357' => 'tpr', 'TPR.G3704' => 'tpr', 'TPR.G3719' => 'tpr', 'TPR.G39257' => 'tpr', 'TPR.G39949' => 'tpr', 'TPR.G928' => 'tpr', 'TWI74G0219' => 'twi', 'TWI79G0222' => 'twi', 'unitig_22.g6039' => 'ugi', 'unitig_747.g21447' => 'ugi', 'unitig_747.g21448' => 'ugi', 'vmacro02881' => 'vma', 'vmacro07856' => 'vma', 'vmacro07857' => 'vma', 'vmacro07858' => 'vma', 'vmacro07859' => 'vma', 'vmacro07860' => 'vma', 'vmacro07861' => 'vma', 'vmacro22459' => 'vma', 'VMungo0540G0021' => 'vmu', 'VMungo1383G1826' => 'vmu', 'Zm00001eb151510' => 'zma', 'Zm00001eb324850' => 'zma', 'Zm00001eb369900' => 'zma', 'Zm00001eb395090' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001129' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001129' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001129' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001129' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001129', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '546', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p12490' => 'bna', 'A02p38070' => 'bna', 'A02p38190' => 'bna', 'A03p17810' => 'bna', 'A03p23440' => 'bna', 'A04p03100' => 'bna', 'A05p02530' => 'bna', 'A07p23430' => 'bna', 'A08p35850' => 'bna', 'A09p15610' => 'bna', 'A09p50340' => 'bna', 'A09p66710' => 'bna', 'A10p05450' => 'bna', 'Aa31LG10G12300' => 'aar', 'Aa31LG10G12310' => 'aar', 'Aa31LG1G23800' => 'aar', 'Aa31LG1G7970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1876' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.374' => 'aag', 'Actinidia09332' => 'ach', 'Actinidia09335' => 'ach', 'Actinidia09336' => 'ach', 'Actinidia11621' => 'ach', 'Actinidia11622' => 'ach', 'Actinidia25195' => 'ach', 'Actinidia25196' => 'ach', 'Ah.04g151760' => 'amhyb', 'AL1G16920' => 'aly', 'AL2G24780' => 'aly', 'AL4G12810' => 'aly', 'AL4G12820' => 'aly', 'AL4G39880' => 'aly', 'AL4G39890' => 'aly', 'AL4G40110' => 'aly', 'AL5G39030' => 'aly', 'AL5G39040' => 'aly', 'AL5G39050' => 'aly', 'AL7G46910' => 'aly', 'AL7G53150' => 'aly', 'Aqoxy1G00256' => 'aox', 'Aqoxy2G00701' => 'aox', 'Aqoxy5G03056' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1AE9PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2WDVD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA8THR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP07WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9HJFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V41UA4' => 'arhy', 'AT1G06900' => 'ath', 'AT2G41790' => 'ath', 'AT3G57460' => 'ath', 'AT3G57465' => 'ath', 'AT3G57470' => 'ath', 'AT5G01440' => 'ath', 'ATR0020G001' => 'atr', 'ATR0332G050' => 'atr', 'ATR0332G087' => 'atr', 'ATR0332G094' => 'atr', 'ATR0693G250' => 'atr', 'ATR0967G001' => 'atr', 'ATR1127G095' => 'atr', 'Atru.chr1.1085' => 'acertr', 'Atru.chr1.2504' => 'acertr', 'Atru.chr6.462' => 'acertr', 'AUR62009732' => 'cqu', 'AUR62024444' => 'cqu', 'AUR62026034' => 'cqu', 'AUR62036212' => 'cqu', 'BcaB02g06767' => 'bca', 'BcaB02g07601' => 'bca', 'BcaB02g07602' => 'bca', 'BcaB02g08315' => 'bca', 'BcaB03g13434' => 'bca', 'BcaB04g19613' => 'bca', 'BcaC02g09940' => 'bca', 'BcaC02g12494' => 'bca', 'BcaC03g17727' => 'bca', 'BcaC05g24658' => 'bca', 'BcaC07g40376' => 'bca', 'BcaC07g42040' => 'bca', 'BcaC07g42543' => 'bca', 'BcaC07g42547' => 'bca', 'BcaC08g44840' => 'bca', 'BcaC08g44841' => 'bca', 'BcaC08g44846' => 'bca', 'BcaC09g48997' => 'bca', 'BcaNung02836' => 'bca', 'BcaNung06244' => 'bca', 'BcaNung06830' => 'bca', 'BolC1t01799H' => 'bol', 'BolC1t01800H' => 'bol', 'BolC1t04327H' => 'bol', 'BolC1t04328H' => 'bol', 'BolC2t11804H' => 'bol', 'BolC2t11808H' => 'bol', 'BolC2t11810H' => 'bol', 'BolC4t21939H' => 'bol', 'BolC4t25051H' => 'bol', 'BolC5t29275H' => 'bol', 'BolC6t37595H' => 'bol', 'BolC6t37600H' => 'bol', 'BolC6t37601H' => 'bol', 'BolC8t50901H' => 'bol', 'BolC8t52622H' => 'bol', 'BolC9t53447H' => 'bol', 'BraA02t08792Z' => 'bra', 'BraA02t08796Z' => 'bra', 'BraA04t16033Z' => 'bra', 'BraA05t19246Z' => 'bra', 'BraA08t35492Z' => 'bra', 'BraA09t40487Z' => 'bra', 'BraA09t42010Z' => 'bra', 'BraA10t42809Z' => 'bra', 'C01p18720' => 'bna', 'C01p43680' => 'bna', 'C01p43690' => 'bna', 'C02p57350' => 'bna', 'C02p57360' => 'bna', 'C03p27960' => 'bna', 'C04p02990' => 'bna', 'C04p34960' => 'bna', 'C05p05030' => 'bna', 'C06p09320' => 'bna', 'C06p24480' => 'bna', 'C06p24520' => 'bna', 'C06p24530' => 'bna', 'C08p02730' => 'bna', 'C08p33010' => 'bna', 'C08p50940' => 'bna', 'CAN.G3.33' => 'can', 'CAN.G676.66' => 'can', 'CAN.G676.67' => 'can', 'CANSAT54G2955' => 'cansat', 'CANSAT80G2109' => 'cansat', 'CARHR006570' => 'chi', 'CARHR136870' => 'chi', 'CARHR167660' => 'chi', 'CARHR167670' => 'chi', 'CARHR167690' => 'chi', 'Carub.0001s0619' => 'cru', 'Carub.0004s0428' => 'cru', 'Carub.0004s2406' => 'cru', 'Carub.0005s2430' => 'cru', 'Carub.0005s2431' => 'cru', 'Ca_08459_v3' => 'car', 'Ca_13897_v3' => 'car', 'Ca_15041_v3' => 'car', 'Ca_23248_v3' => 'car', 'Ca_28606_v3' => 'car', 'Ca_30053_v3' => 'car', 'CBR_g12082' => 'cbr', 'CBR_g27959' => 'cbr', 'CBR_g45246' => 'cbr', 'CBR_g49619' => 'cbr', 'CBR_g49621' => 'cbr', 'Cc00_g06010' => 'ccan', 'Cc00_g10010' => 'ccan', 'Cc01_g15280' => 'ccan', 'Cc03_g06630' => 'ccan', 'Cc06_g17050' => 'ccan', 'Cc06_g17060' => 'ccan', 'CDE05G3018' => 'cde', 'CDE05G3167' => 'cde', 'CDE06G0445' => 'cde', 'Cfa011826' => 'cfa', 'Cfa016822' => 'cfa', 'Cfa023906' => 'cfa', 'Ciclev10000133m.g' => 'ccl', 'Ciclev10004240m.g' => 'ccl', 'Ciclev10004250m.g' => 'ccl', 'CiPaw.09G037700' => 'cil', 'CiPaw.10G033100' => 'cil', 'CiPaw.13G064200' => 'cil', 'ClCG02G019050' => 'cla', 'ClCG10G016980' => 'cla', 'COL.COLO4_06002' => 'col', 'COL.COLO4_11207' => 'col', 'COL.COLO4_13216' => 'col', 'COL.COLO4_28264' => 'col', 'COL.COLO4_28268' => 'col', 'COL.COLO4_28275' => 'col', 'Cpa.g.sc2.304' => 'cpa', 'Cpa.g.sc2.305' => 'cpa', 'Cpa.g.sc92.47' => 'cpa', 'Cre01.g034100' => 'cre', 'Cre01.g041855' => 'cre', 'Cre09.g386113' => 'cre', 'CsaV3_3G039410' => 'csa', 'CsaV3_6G019170' => 'csa', 'CSS0010940' => 'camsi', 'CSS0019735' => 'camsi', 'DCAR_004800' => 'dca', 'DCAR_020490' => 'dca', 'Dinv00382' => 'din', 'Dinv12479' => 'din', 'Dinv28728' => 'din', 'Dinv39591' => 'din', 'Dinv39593' => 'din', 'Dinv39598' => 'din', 'Duzib093G0063' => 'dzi', 'Duzib093G0335' => 'dzi', 'Duzib093G1038' => 'dzi', 'Duzib128G1487' => 'dzi', 'Duzib168G0079' => 'dzi', 'ECA247G0490' => 'eca', 'ECA247G0660' => 'eca', 'ECA247G0911' => 'eca', 'EL10Ac3g07087' => 'bvu', 'EL10Ac7g15852' => 'bvu', 'Eucgr.A02352' => 'egr', 'Eucgr.A02354' => 'egr', 'Eucgr.A02355' => 'egr', 'Eucgr.A02357' => 'egr', 'Eucgr.A02358' => 'egr', 'Eucgr.A02359' => 'egr', 'Eucgr.B04025' => 'egr', 'Eucgr.C03112' => 'egr', 'Eucgr.H02814' => 'egr', 'FAN01G1484' => 'fan', 'FAN02G2306' => 'fan', 'FAN04G0733' => 'fan', 'FAN05G4515' => 'fan', 'FAN06G3753' => 'fan', 'FAN08G0077' => 'fan', 'FAN09G1141' => 'fan', 'FAN11G1991' => 'fan', 'FAN11G2052' => 'fan', 'FAN11G2940' => 'fan', 'FAN11G3836' => 'fan', 'FAN13G0243' => 'fan', 'FAN13G1906' => 'fan', 'FAN13G3149' => 'fan', 'FAN16G0023' => 'fan', 'FAN16G3400' => 'fan', 'FAN18G1906' => 'fan', 'FAN18G3567' => 'fan', 'FAN21G2271' => 'fan', 'FAN21G2900' => 'fan', 'FvH4_3g40361' => 'fve', 'FvH4_3g40370' => 'fve', 'FvH4_3g40391' => 'fve', 'FvH4_3g40410' => 'fve', 'FvH4_3g40411' => 'fve', 'FvH4_3g40412' => 'fve', 'FvH4_3g40413' => 'fve', 'FvH4_3g40440' => 'fve', 'FvH4_3g41040' => 'fve', 'FvH4_5g00310' => 'fve', 'FvH4_6g23690' => 'fve', 'Glyma.03G137100' => 'gma', 'Glyma.11G160300' => 'gma', 'Glyma.18G053700' => 'gma', 'Glyma.19G139800' => 'gma', 'Gohir.A01G131400' => 'ghi', 'Gohir.A01G131500' => 'ghi', 'Gohir.A03G023300' => 'ghi', 'Gohir.A08G164850' => 'ghi', 'Gohir.D01G120700' => 'ghi', 'Gohir.D03G054201' => 'ghi', 'Gohir.D03G145400' => 'ghi', 'Gohir.D07G130166' => 'ghi', 'Gohir.D08G133750' => 'ghi', 'Gohir.D09G013866' => 'ghi', 'Gohir.D09G051901' => 'ghi', 'Gohir.D10G086832' => 'ghi', 'Gohir.D11G291701' => 'ghi', 'Gorai.001G201100' => 'gra', 'Gorai.002G147300' => 'gra', 'Gorai.002G147500' => 'gra', 'Gorai.003G152500' => 'gra', 'Gorai.006G004900' => 'gra', 'Gorai.007G260700' => 'gra', 'Gorai.009G402100' => 'gra', 'Gorai.009G417200' => 'gra', 'Gorai.011G096400' => 'gra', 'Gorai.012G121300' => 'gra', 'GSVIVG01024571001' => 'vvi', 'GSVIVG01033283001' => 'vvi', 'GSVIVG01033284001' => 'vvi', 'HanXRQChr08g0230671' => 'han', 'HanXRQChr10g0289411' => 'han', 'Haze_16414' => 'cav', 'Haze_16417' => 'cav', 'Haze_16419' => 'cav', 'Haze_19863' => 'cav', 'Haze_19866' => 'cav', 'Haze_24463' => 'cav', 'Hma1.2p1_0170F.1_g075000' => 'hma', 'Hma1.2p1_1168F.1_g263180' => 'hma', 'Hma1.2p1_1168F.1_g263190' => 'hma', 'HPP92_006786' => 'vpl', 'HPP92_006787' => 'vpl', 'HPP92_006788' => 'vpl', 'HPP92_007503' => 'vpl', 'HPP92_015907' => 'vpl', 'HPP92_015909' => 'vpl', 'HPP92_015932' => 'vpl', 'HPP92_027671' => 'vpl', 'HPP92_028209' => 'vpl', 'Hund05051' => 'sun', 'Hund19150' => 'sun', 'Hund24708' => 'sun', 'Lalb_Chr01g0017291' => 'lal', 'Lalb_Chr18g0054261' => 'lal', 'Lj1g0001320' => 'lja', 'Lj2C1101T10' => 'lonja', 'Lj2C384T5' => 'lonja', 'Lj2C384T6' => 'lonja', 'Lj2P1101T48' => 'lonja', 'Lj4g0007497' => 'lja', 'Lj6g0006618' => 'lja', 'Lju124C40G7' => 'lonja', 'Lsat_1_v5_gn_4_182701' => 'lsa', 'Lsat_1_v5_gn_4_78000' => 'lsa', 'Lsat_1_v5_gn_6_8680' => 'lsa', 'Lsat_1_v5_gn_6_8700' => 'lsa', 'Lsat_1_v5_gn_7_58040' => 'lsa', 'Lsat_1_v5_gn_9_13880' => 'lsa', 'Lsat_1_v5_gn_9_28860' => 'lsa', 'Manes.02G208660' => 'mes', 'Manes.08G050900' => 'mes', 'Manes.09G021401' => 'mes', 'Manes.09G021500' => 'mes', 'Mapoly0021s0007' => 'mpo', 'Mapoly0029s0118' => 'mpo', 'MBI02_g23135_MAGBIO' => 'mbi', 'MCO11G812' => 'mco', 'MD03G1052300' => 'mdo', 'MD09G1162200' => 'mdo', 'MD09G1162300' => 'mdo', 'MD10G1074700' => 'mdo', 'MD11G1054400' => 'mdo', 'MD12G1073300' => 'mdo', 'MD14G1071400' => 'mdo', 'MD14G1071600' => 'mdo', 'MD17G1069300' => 'mdo', 'Medtr3g466820' => 'mtr', 'Medtr5g095180' => 'mtr', 'Medtr7g057410' => 'mtr', 'Medtr7g091590' => 'mtr', 'MELO3C009685.2' => 'cme', 'MELO3C026877.2' => 'cme', 'Migut.D00820' => 'egut', 'Migut.J01762' => 'egut', 'MSTRG.18541' => 'ama', 'MSTRG.6511' => 'ama', 'MSTRG.6512' => 'ama', 'MSTRG.6516' => 'ama', 'MSTRG.6517' => 'ama', 'Nitab4.5_0000002g0190' => 'nta', 'Nitab4.5_0000733g0020' => 'nta', 'Nitab4.5_0000733g0050' => 'nta', 'Nitab4.5_0002620g0020' => 'nta', 'Nitab4.5_0005611g0030' => 'nta', 'Nitab4.5_0005611g0040' => 'nta', 'Nn2g10322' => 'nnu', 'Nn7g36265' => 'nnu', 'Nn7g36269' => 'nnu', 'Oeu000828.1' => 'oeu', 'Oeu015568.1' => 'oeu', 'Oeu015569.1' => 'oeu', 'Oeu055223.1' => 'oeu', 'Os01g0778800' => 'osa', 'Os01g0779100' => 'osa', 'Os03g0336300' => 'osa', 'Os07g0570100' => 'osa', 'Os07g0570300' => 'osa', 'Os07g0570500' => 'osa', 'Peaxi162Scf00044g01412' => 'pax', 'Peaxi162Scf00493g00005' => 'pax', 'Peaxi162Scf00960g00119' => 'pax', 'Peaxi162Scf00960g00120' => 'pax', 'PGR004G1628' => 'pgr', 'PGR004G1973' => 'pgr', 'PGR004G1988' => 'pgr', 'PGR004G2267' => 'pgr', 'PGR102G0317' => 'pgr', 'PGSC0003DMG400027247' => 'stu', 'PGSC0003DMG401027248' => 'stu', 'PGSC0003DMG402027248' => 'stu', 'Phvul.001G133200' => 'pvu', 'Phvul.006G077500' => 'pvu', 'Potri.006G050700' => 'ptr', 'Potri.013G154600' => 'ptr', 'Pp3c10_5860' => 'ppa', 'Pp3c14_4240' => 'ppa', 'Pp3c14_4243' => 'ppa', 'Pp3c16_8340' => 'ppa', 'Pp3c1_4220' => 'ppa', 'Pp3c5_6610' => 'ppa', 'Pp3c5_8950' => 'ppa', 'PRCOL_00003896' => 'pco', 'PRCOL_00006552' => 'pco', 'Prupe.6G041800' => 'ppe', 'Prupe.6G041900' => 'ppe', 'Prupe.7G061600' => 'ppe', 'Psat0s427g0040' => 'psa', 'Psat0s475g0040' => 'psa', 'Psat0s475g0080' => 'psa', 'Psat0s475g0120' => 'psa', 'Psat0s4995g0040' => 'psa', 'Psat0s6682g0040' => 'psa', 'Psat0s6682g0080' => 'psa', 'Psat0s6868g0120' => 'psa', 'Psat1g112160' => 'psa', 'Psat1g114160' => 'psa', 'Psat1g135520' => 'psa', 'Psat2g172400' => 'psa', 'Psat3g072640' => 'psa', 'Psat3g160720' => 'psa', 'Psat4g066560' => 'psa', 'Psat5g028240' => 'psa', 'Psat5g149400' => 'psa', 'PSO339G0703' => 'pso', 'PSO339G2454' => 'pso', 'PSO384G2839' => 'pso', 'PSO384G4550' => 'pso', 'PSO384G4551' => 'pso', 'PSO478G2702' => 'pso', 'QL01p024916' => 'qlo', 'RcHm_v2.0_Chr1g0321501' => 'rch', 'RcHm_v2.0_Chr1g0322391' => 'rch', 'RcHm_v2.0_Chr1g0322401' => 'rch', 'RcHm_v2.0_Chr1g0322811' => 'rch', 'RcHm_v2.0_Chr1g0333061' => 'rch', 'RcHm_v2.0_Chr1g0333071' => 'rch', 'RcHm_v2.0_Chr1g0333081' => 'rch', 'RcHm_v2.0_Chr1g0333871' => 'rch', 'RcHm_v2.0_Chr1g0333951' => 'rch', 'RcHm_v2.0_Chr1g0334011' => 'rch', 'RcHm_v2.0_Chr1g0334021' => 'rch', 'RcHm_v2.0_Chr1g0334031' => 'rch', 'RcHm_v2.0_Chr1g0334041' => 'rch', 'RcHm_v2.0_Chr1g0335131' => 'rch', 'RcHm_v2.0_Chr1g0335141' => 'rch', 'RcHm_v2.0_Chr1g0335171' => 'rch', 'RcHm_v2.0_Chr2g0132461' => 'rch', 'RcHm_v2.0_Chr2g0145491' => 'rch', 'RcHm_v2.0_Chr2g0151411' => 'rch', 'RcHm_v2.0_Chr3g0481841' => 'rch', 'RcHm_v2.0_Chr3g0482151' => 'rch', 'RcHm_v2.0_Chr3g0482171' => 'rch', 'RcHm_v2.0_Chr3g0492731' => 'rch', 'RcHm_v2.0_Chr5g0063901' => 'rch', 'RcHm_v2.0_Chr5g0072781' => 'rch', 'RcHm_v2.0_Chr5g0072791' => 'rch', 'RcHm_v2.0_Chr5g0072801' => 'rch', 'RcHm_v2.0_Chr5g0072811' => 'rch', 'RcHm_v2.0_Chr5g0072891' => 'rch', 'RcHm_v2.0_Chr5g0072931' => 'rch', 'RcHm_v2.0_Chr5g0072951' => 'rch', 'RcHm_v2.0_Chr5g0073041' => 'rch', 'RcHm_v2.0_Chr5g0073051' => 'rch', 'RcHm_v2.0_Chr5g0073061' => 'rch', 'RcHm_v2.0_Chr5g0073071' => 'rch', 'RcHm_v2.0_Chr5g0074151' => 'rch', 'RcHm_v2.0_Chr5g0074161' => 'rch', 'RcHm_v2.0_Chr5g0074171' => 'rch', 'RcHm_v2.0_Chr6g0278561' => 'rch', 'RcHm_v2.0_Chr7g0202261' => 'rch', 'Rhsim03G0021400' => 'rsi', 'Rhsim03G0022100' => 'rsi', 'Rhsim03G0023500' => 'rsi', 'Rhsim13G0059900' => 'rsi', 'Sabra06G0035400' => 'sbr', 'Sabra13G0124500' => 'sbr', 'SalBow1G3107' => 'sbo', 'SalBow6G0410' => 'sbo', 'Sc06g0008100' => 'sci', 'Sc13g0001790' => 'sci', 'Sed0017574' => 'sed', 'Sed0019452' => 'sed', 'SEGI_02273' => 'sgi', 'SEGI_03863' => 'sgi', 'SEGI_04230' => 'sgi', 'SEGI_13690' => 'sgi', 'SEGI_13924' => 'sgi', 'SEGI_15745' => 'sgi', 'SEGI_18924' => 'sgi', 'SEGI_27991' => 'sgi', 'SEGI_30209' => 'sgi', 'SEGI_32700' => 'sgi', 'SEGI_36312' => 'sgi', 'SEGI_39007' => 'sgi', 'SGA_v2.0_scaffold20G09290' => 'sas', 'SGA_v2.0_scaffold69G23113' => 'sas', 'SHI11186' => 'shi', 'SMO239G0088' => 'smo', 'SMO337G0024' => 'smo', 'Solyc02g043860.3' => 'sly', 'Solyc04g015680.3' => 'sly', 'Solyc04g015690.4' => 'sly', 'Solyc09g055740.1' => 'sly', 'Sopen02g007490' => 'spe', 'Sopen04g007760' => 'spe', 'Sopen04g007770' => 'spe', 'Sp1g05610' => 'spa', 'Sp4g24050' => 'spa', 'Sp5g05130' => 'spa', 'Sp5g05140' => 'spa', 'TAR369G1057' => 'tar', 'TAR623G0919' => 'tar', 'TAR633G2160' => 'tar', 'TAR636G3238' => 'tar', 'THA.LOC104800786' => 'tha', 'THA.LOC104802114' => 'tha', 'THA.LOC104824443' => 'tha', 'Thecc.05G154200' => 'tca', 'Thecc.05G154400' => 'tca', 'Thecc.05G154700' => 'tca', 'Thecc.05G155200' => 'tca', 'Thecc.09G363300' => 'tca', 'Thhalv10005770m.g' => 'esa', 'Thhalv10006660m.g' => 'esa', 'Thhalv10009720m.g' => 'esa', 'Thhalv10016187m.g' => 'esa', 'TPR.G24864' => 'tpr', 'TPR.G27380' => 'tpr', 'TPR.G27384' => 'tpr', 'TPR.G29243' => 'tpr', 'TPR.G29646' => 'tpr', 'TPR.G36357' => 'tpr', 'TPR.G3704' => 'tpr', 'TPR.G3719' => 'tpr', 'TPR.G39257' => 'tpr', 'TPR.G39949' => 'tpr', 'TPR.G928' => 'tpr', 'TWI74G0219' => 'twi', 'TWI79G0222' => 'twi', 'unitig_22.g6039' => 'ugi', 'unitig_747.g21447' => 'ugi', 'unitig_747.g21448' => 'ugi', 'vmacro02881' => 'vma', 'vmacro07856' => 'vma', 'vmacro07857' => 'vma', 'vmacro07858' => 'vma', 'vmacro07859' => 'vma', 'vmacro07860' => 'vma', 'vmacro07861' => 'vma', 'vmacro22459' => 'vma', 'VMungo0540G0021' => 'vmu', 'VMungo1383G1826' => 'vmu', 'Zm00001eb151510' => 'zma', 'Zm00001eb324850' => 'zma', 'Zm00001eb369900' => 'zma', 'Zm00001eb395090' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001129', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001129' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001129', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '546', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001129' ) ), 'genes' => array( 'A01p12490' => 'bna', 'A02p38070' => 'bna', 'A02p38190' => 'bna', 'A03p17810' => 'bna', 'A03p23440' => 'bna', 'A04p03100' => 'bna', 'A05p02530' => 'bna', 'A07p23430' => 'bna', 'A08p35850' => 'bna', 'A09p15610' => 'bna', 'A09p50340' => 'bna', 'A09p66710' => 'bna', 'A10p05450' => 'bna', 'Aa31LG10G12300' => 'aar', 'Aa31LG10G12310' => 'aar', 'Aa31LG1G23800' => 'aar', 'Aa31LG1G7970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1876' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.374' => 'aag', 'Actinidia09332' => 'ach', 'Actinidia09335' => 'ach', 'Actinidia09336' => 'ach', 'Actinidia11621' => 'ach', 'Actinidia11622' => 'ach', 'Actinidia25195' => 'ach', 'Actinidia25196' => 'ach', 'Ah.04g151760' => 'amhyb', 'AL1G16920' => 'aly', 'AL2G24780' => 'aly', 'AL4G12810' => 'aly', 'AL4G12820' => 'aly', 'AL4G39880' => 'aly', 'AL4G39890' => 'aly', 'AL4G40110' => 'aly', 'AL5G39030' => 'aly', 'AL5G39040' => 'aly', 'AL5G39050' => 'aly', 'AL7G46910' => 'aly', 'AL7G53150' => 'aly', 'Aqoxy1G00256' => 'aox', 'Aqoxy2G00701' => 'aox', 'Aqoxy5G03056' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1AE9PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2WDVD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA8THR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP07WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9HJFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V41UA4' => 'arhy', 'AT1G06900' => 'ath', 'AT2G41790' => 'ath', 'AT3G57460' => 'ath', 'AT3G57465' => 'ath', 'AT3G57470' => 'ath', 'AT5G01440' => 'ath', 'ATR0020G001' => 'atr', 'ATR0332G050' => 'atr', 'ATR0332G087' => 'atr', 'ATR0332G094' => 'atr', 'ATR0693G250' => 'atr', 'ATR0967G001' => 'atr', 'ATR1127G095' => 'atr', 'Atru.chr1.1085' => 'acertr', 'Atru.chr1.2504' => 'acertr', 'Atru.chr6.462' => 'acertr', 'AUR62009732' => 'cqu', 'AUR62024444' => 'cqu', 'AUR62026034' => 'cqu', 'AUR62036212' => 'cqu', 'BcaB02g06767' => 'bca', 'BcaB02g07601' => 'bca', 'BcaB02g07602' => 'bca', 'BcaB02g08315' => 'bca', 'BcaB03g13434' => 'bca', 'BcaB04g19613' => 'bca', 'BcaC02g09940' => 'bca', 'BcaC02g12494' => 'bca', 'BcaC03g17727' => 'bca', 'BcaC05g24658' => 'bca', 'BcaC07g40376' => 'bca', 'BcaC07g42040' => 'bca', 'BcaC07g42543' => 'bca', 'BcaC07g42547' => 'bca', 'BcaC08g44840' => 'bca', 'BcaC08g44841' => 'bca', 'BcaC08g44846' => 'bca', 'BcaC09g48997' => 'bca', 'BcaNung02836' => 'bca', 'BcaNung06244' => 'bca', 'BcaNung06830' => 'bca', 'BolC1t01799H' => 'bol', 'BolC1t01800H' => 'bol', 'BolC1t04327H' => 'bol', 'BolC1t04328H' => 'bol', 'BolC2t11804H' => 'bol', 'BolC2t11808H' => 'bol', 'BolC2t11810H' => 'bol', 'BolC4t21939H' => 'bol', 'BolC4t25051H' => 'bol', 'BolC5t29275H' => 'bol', 'BolC6t37595H' => 'bol', 'BolC6t37600H' => 'bol', 'BolC6t37601H' => 'bol', 'BolC8t50901H' => 'bol', 'BolC8t52622H' => 'bol', 'BolC9t53447H' => 'bol', 'BraA02t08792Z' => 'bra', 'BraA02t08796Z' => 'bra', 'BraA04t16033Z' => 'bra', 'BraA05t19246Z' => 'bra', 'BraA08t35492Z' => 'bra', 'BraA09t40487Z' => 'bra', 'BraA09t42010Z' => 'bra', 'BraA10t42809Z' => 'bra', 'C01p18720' => 'bna', 'C01p43680' => 'bna', 'C01p43690' => 'bna', 'C02p57350' => 'bna', 'C02p57360' => 'bna', 'C03p27960' => 'bna', 'C04p02990' => 'bna', 'C04p34960' => 'bna', 'C05p05030' => 'bna', 'C06p09320' => 'bna', 'C06p24480' => 'bna', 'C06p24520' => 'bna', 'C06p24530' => 'bna', 'C08p02730' => 'bna', 'C08p33010' => 'bna', 'C08p50940' => 'bna', 'CAN.G3.33' => 'can', 'CAN.G676.66' => 'can', 'CAN.G676.67' => 'can', 'CANSAT54G2955' => 'cansat', 'CANSAT80G2109' => 'cansat', 'CARHR006570' => 'chi', 'CARHR136870' => 'chi', 'CARHR167660' => 'chi', 'CARHR167670' => 'chi', 'CARHR167690' => 'chi', 'Carub.0001s0619' => 'cru', 'Carub.0004s0428' => 'cru', 'Carub.0004s2406' => 'cru', 'Carub.0005s2430' => 'cru', 'Carub.0005s2431' => 'cru', 'Ca_08459_v3' => 'car', 'Ca_13897_v3' => 'car', 'Ca_15041_v3' => 'car', 'Ca_23248_v3' => 'car', 'Ca_28606_v3' => 'car', 'Ca_30053_v3' => 'car', 'CBR_g12082' => 'cbr', 'CBR_g27959' => 'cbr', 'CBR_g45246' => 'cbr', 'CBR_g49619' => 'cbr', 'CBR_g49621' => 'cbr', 'Cc00_g06010' => 'ccan', 'Cc00_g10010' => 'ccan', 'Cc01_g15280' => 'ccan', 'Cc03_g06630' => 'ccan', 'Cc06_g17050' => 'ccan', 'Cc06_g17060' => 'ccan', 'CDE05G3018' => 'cde', 'CDE05G3167' => 'cde', 'CDE06G0445' => 'cde', 'Cfa011826' => 'cfa', 'Cfa016822' => 'cfa', 'Cfa023906' => 'cfa', 'Ciclev10000133m.g' => 'ccl', 'Ciclev10004240m.g' => 'ccl', 'Ciclev10004250m.g' => 'ccl', 'CiPaw.09G037700' => 'cil', 'CiPaw.10G033100' => 'cil', 'CiPaw.13G064200' => 'cil', 'ClCG02G019050' => 'cla', 'ClCG10G016980' => 'cla', 'COL.COLO4_06002' => 'col', 'COL.COLO4_11207' => 'col', 'COL.COLO4_13216' => 'col', 'COL.COLO4_28264' => 'col', 'COL.COLO4_28268' => 'col', 'COL.COLO4_28275' => 'col', 'Cpa.g.sc2.304' => 'cpa', 'Cpa.g.sc2.305' => 'cpa', 'Cpa.g.sc92.47' => 'cpa', 'Cre01.g034100' => 'cre', 'Cre01.g041855' => 'cre', 'Cre09.g386113' => 'cre', 'CsaV3_3G039410' => 'csa', 'CsaV3_6G019170' => 'csa', 'CSS0010940' => 'camsi', 'CSS0019735' => 'camsi', 'DCAR_004800' => 'dca', 'DCAR_020490' => 'dca', 'Dinv00382' => 'din', 'Dinv12479' => 'din', 'Dinv28728' => 'din', 'Dinv39591' => 'din', 'Dinv39593' => 'din', 'Dinv39598' => 'din', 'Duzib093G0063' => 'dzi', 'Duzib093G0335' => 'dzi', 'Duzib093G1038' => 'dzi', 'Duzib128G1487' => 'dzi', 'Duzib168G0079' => 'dzi', 'ECA247G0490' => 'eca', 'ECA247G0660' => 'eca', 'ECA247G0911' => 'eca', 'EL10Ac3g07087' => 'bvu', 'EL10Ac7g15852' => 'bvu', 'Eucgr.A02352' => 'egr', 'Eucgr.A02354' => 'egr', 'Eucgr.A02355' => 'egr', 'Eucgr.A02357' => 'egr', 'Eucgr.A02358' => 'egr', 'Eucgr.A02359' => 'egr', 'Eucgr.B04025' => 'egr', 'Eucgr.C03112' => 'egr', 'Eucgr.H02814' => 'egr', 'FAN01G1484' => 'fan', 'FAN02G2306' => 'fan', 'FAN04G0733' => 'fan', 'FAN05G4515' => 'fan', 'FAN06G3753' => 'fan', 'FAN08G0077' => 'fan', 'FAN09G1141' => 'fan', 'FAN11G1991' => 'fan', 'FAN11G2052' => 'fan', 'FAN11G2940' => 'fan', 'FAN11G3836' => 'fan', 'FAN13G0243' => 'fan', 'FAN13G1906' => 'fan', 'FAN13G3149' => 'fan', 'FAN16G0023' => 'fan', 'FAN16G3400' => 'fan', 'FAN18G1906' => 'fan', 'FAN18G3567' => 'fan', 'FAN21G2271' => 'fan', 'FAN21G2900' => 'fan', 'FvH4_3g40361' => 'fve', 'FvH4_3g40370' => 'fve', 'FvH4_3g40391' => 'fve', 'FvH4_3g40410' => 'fve', 'FvH4_3g40411' => 'fve', 'FvH4_3g40412' => 'fve', 'FvH4_3g40413' => 'fve', 'FvH4_3g40440' => 'fve', 'FvH4_3g41040' => 'fve', 'FvH4_5g00310' => 'fve', 'FvH4_6g23690' => 'fve', 'Glyma.03G137100' => 'gma', 'Glyma.11G160300' => 'gma', 'Glyma.18G053700' => 'gma', 'Glyma.19G139800' => 'gma', 'Gohir.A01G131400' => 'ghi', 'Gohir.A01G131500' => 'ghi', 'Gohir.A03G023300' => 'ghi', 'Gohir.A08G164850' => 'ghi', 'Gohir.D01G120700' => 'ghi', 'Gohir.D03G054201' => 'ghi', 'Gohir.D03G145400' => 'ghi', 'Gohir.D07G130166' => 'ghi', 'Gohir.D08G133750' => 'ghi', 'Gohir.D09G013866' => 'ghi', 'Gohir.D09G051901' => 'ghi', 'Gohir.D10G086832' => 'ghi', 'Gohir.D11G291701' => 'ghi', 'Gorai.001G201100' => 'gra', 'Gorai.002G147300' => 'gra', 'Gorai.002G147500' => 'gra', 'Gorai.003G152500' => 'gra', 'Gorai.006G004900' => 'gra', 'Gorai.007G260700' => 'gra', 'Gorai.009G402100' => 'gra', 'Gorai.009G417200' => 'gra', 'Gorai.011G096400' => 'gra', 'Gorai.012G121300' => 'gra', 'GSVIVG01024571001' => 'vvi', 'GSVIVG01033283001' => 'vvi', 'GSVIVG01033284001' => 'vvi', 'HanXRQChr08g0230671' => 'han', 'HanXRQChr10g0289411' => 'han', 'Haze_16414' => 'cav', 'Haze_16417' => 'cav', 'Haze_16419' => 'cav', 'Haze_19863' => 'cav', 'Haze_19866' => 'cav', 'Haze_24463' => 'cav', 'Hma1.2p1_0170F.1_g075000' => 'hma', 'Hma1.2p1_1168F.1_g263180' => 'hma', 'Hma1.2p1_1168F.1_g263190' => 'hma', 'HPP92_006786' => 'vpl', 'HPP92_006787' => 'vpl', 'HPP92_006788' => 'vpl', 'HPP92_007503' => 'vpl', 'HPP92_015907' => 'vpl', 'HPP92_015909' => 'vpl', 'HPP92_015932' => 'vpl', 'HPP92_027671' => 'vpl', 'HPP92_028209' => 'vpl', 'Hund05051' => 'sun', 'Hund19150' => 'sun', 'Hund24708' => 'sun', 'Lalb_Chr01g0017291' => 'lal', 'Lalb_Chr18g0054261' => 'lal', 'Lj1g0001320' => 'lja', 'Lj2C1101T10' => 'lonja', 'Lj2C384T5' => 'lonja', 'Lj2C384T6' => 'lonja', 'Lj2P1101T48' => 'lonja', 'Lj4g0007497' => 'lja', 'Lj6g0006618' => 'lja', 'Lju124C40G7' => 'lonja', 'Lsat_1_v5_gn_4_182701' => 'lsa', 'Lsat_1_v5_gn_4_78000' => 'lsa', 'Lsat_1_v5_gn_6_8680' => 'lsa', 'Lsat_1_v5_gn_6_8700' => 'lsa', 'Lsat_1_v5_gn_7_58040' => 'lsa', 'Lsat_1_v5_gn_9_13880' => 'lsa', 'Lsat_1_v5_gn_9_28860' => 'lsa', 'Manes.02G208660' => 'mes', 'Manes.08G050900' => 'mes', 'Manes.09G021401' => 'mes', 'Manes.09G021500' => 'mes', 'Mapoly0021s0007' => 'mpo', 'Mapoly0029s0118' => 'mpo', 'MBI02_g23135_MAGBIO' => 'mbi', 'MCO11G812' => 'mco', 'MD03G1052300' => 'mdo', 'MD09G1162200' => 'mdo', 'MD09G1162300' => 'mdo', 'MD10G1074700' => 'mdo', 'MD11G1054400' => 'mdo', 'MD12G1073300' => 'mdo', 'MD14G1071400' => 'mdo', 'MD14G1071600' => 'mdo', 'MD17G1069300' => 'mdo', 'Medtr3g466820' => 'mtr', 'Medtr5g095180' => 'mtr', 'Medtr7g057410' => 'mtr', 'Medtr7g091590' => 'mtr', 'MELO3C009685.2' => 'cme', 'MELO3C026877.2' => 'cme', 'Migut.D00820' => 'egut', 'Migut.J01762' => 'egut', 'MSTRG.18541' => 'ama', 'MSTRG.6511' => 'ama', 'MSTRG.6512' => 'ama', 'MSTRG.6516' => 'ama', 'MSTRG.6517' => 'ama', 'Nitab4.5_0000002g0190' => 'nta', 'Nitab4.5_0000733g0020' => 'nta', 'Nitab4.5_0000733g0050' => 'nta', 'Nitab4.5_0002620g0020' => 'nta', 'Nitab4.5_0005611g0030' => 'nta', 'Nitab4.5_0005611g0040' => 'nta', 'Nn2g10322' => 'nnu', 'Nn7g36265' => 'nnu', 'Nn7g36269' => 'nnu', 'Oeu000828.1' => 'oeu', 'Oeu015568.1' => 'oeu', 'Oeu015569.1' => 'oeu', 'Oeu055223.1' => 'oeu', 'Os01g0778800' => 'osa', 'Os01g0779100' => 'osa', 'Os03g0336300' => 'osa', 'Os07g0570100' => 'osa', 'Os07g0570300' => 'osa', 'Os07g0570500' => 'osa', 'Peaxi162Scf00044g01412' => 'pax', 'Peaxi162Scf00493g00005' => 'pax', 'Peaxi162Scf00960g00119' => 'pax', 'Peaxi162Scf00960g00120' => 'pax', 'PGR004G1628' => 'pgr', 'PGR004G1973' => 'pgr', 'PGR004G1988' => 'pgr', 'PGR004G2267' => 'pgr', 'PGR102G0317' => 'pgr', 'PGSC0003DMG400027247' => 'stu', 'PGSC0003DMG401027248' => 'stu', 'PGSC0003DMG402027248' => 'stu', 'Phvul.001G133200' => 'pvu', 'Phvul.006G077500' => 'pvu', 'Potri.006G050700' => 'ptr', 'Potri.013G154600' => 'ptr', 'Pp3c10_5860' => 'ppa', 'Pp3c14_4240' => 'ppa', 'Pp3c14_4243' => 'ppa', 'Pp3c16_8340' => 'ppa', 'Pp3c1_4220' => 'ppa', 'Pp3c5_6610' => 'ppa', 'Pp3c5_8950' => 'ppa', 'PRCOL_00003896' => 'pco', 'PRCOL_00006552' => 'pco', 'Prupe.6G041800' => 'ppe', 'Prupe.6G041900' => 'ppe', 'Prupe.7G061600' => 'ppe', 'Psat0s427g0040' => 'psa', 'Psat0s475g0040' => 'psa', 'Psat0s475g0080' => 'psa', 'Psat0s475g0120' => 'psa', 'Psat0s4995g0040' => 'psa', 'Psat0s6682g0040' => 'psa', 'Psat0s6682g0080' => 'psa', 'Psat0s6868g0120' => 'psa', 'Psat1g112160' => 'psa', 'Psat1g114160' => 'psa', 'Psat1g135520' => 'psa', 'Psat2g172400' => 'psa', 'Psat3g072640' => 'psa', 'Psat3g160720' => 'psa', 'Psat4g066560' => 'psa', 'Psat5g028240' => 'psa', 'Psat5g149400' => 'psa', 'PSO339G0703' => 'pso', 'PSO339G2454' => 'pso', 'PSO384G2839' => 'pso', 'PSO384G4550' => 'pso', 'PSO384G4551' => 'pso', 'PSO478G2702' => 'pso', 'QL01p024916' => 'qlo', 'RcHm_v2.0_Chr1g0321501' => 'rch', 'RcHm_v2.0_Chr1g0322391' => 'rch', 'RcHm_v2.0_Chr1g0322401' => 'rch', 'RcHm_v2.0_Chr1g0322811' => 'rch', 'RcHm_v2.0_Chr1g0333061' => 'rch', 'RcHm_v2.0_Chr1g0333071' => 'rch', 'RcHm_v2.0_Chr1g0333081' => 'rch', 'RcHm_v2.0_Chr1g0333871' => 'rch', 'RcHm_v2.0_Chr1g0333951' => 'rch', 'RcHm_v2.0_Chr1g0334011' => 'rch', 'RcHm_v2.0_Chr1g0334021' => 'rch', 'RcHm_v2.0_Chr1g0334031' => 'rch', 'RcHm_v2.0_Chr1g0334041' => 'rch', 'RcHm_v2.0_Chr1g0335131' => 'rch', 'RcHm_v2.0_Chr1g0335141' => 'rch', 'RcHm_v2.0_Chr1g0335171' => 'rch', 'RcHm_v2.0_Chr2g0132461' => 'rch', 'RcHm_v2.0_Chr2g0145491' => 'rch', 'RcHm_v2.0_Chr2g0151411' => 'rch', 'RcHm_v2.0_Chr3g0481841' => 'rch', 'RcHm_v2.0_Chr3g0482151' => 'rch', 'RcHm_v2.0_Chr3g0482171' => 'rch', 'RcHm_v2.0_Chr3g0492731' => 'rch', 'RcHm_v2.0_Chr5g0063901' => 'rch', 'RcHm_v2.0_Chr5g0072781' => 'rch', 'RcHm_v2.0_Chr5g0072791' => 'rch', 'RcHm_v2.0_Chr5g0072801' => 'rch', 'RcHm_v2.0_Chr5g0072811' => 'rch', 'RcHm_v2.0_Chr5g0072891' => 'rch', 'RcHm_v2.0_Chr5g0072931' => 'rch', 'RcHm_v2.0_Chr5g0072951' => 'rch', 'RcHm_v2.0_Chr5g0073041' => 'rch', 'RcHm_v2.0_Chr5g0073051' => 'rch', 'RcHm_v2.0_Chr5g0073061' => 'rch', 'RcHm_v2.0_Chr5g0073071' => 'rch', 'RcHm_v2.0_Chr5g0074151' => 'rch', 'RcHm_v2.0_Chr5g0074161' => 'rch', 'RcHm_v2.0_Chr5g0074171' => 'rch', 'RcHm_v2.0_Chr6g0278561' => 'rch', 'RcHm_v2.0_Chr7g0202261' => 'rch', 'Rhsim03G0021400' => 'rsi', 'Rhsim03G0022100' => 'rsi', 'Rhsim03G0023500' => 'rsi', 'Rhsim13G0059900' => 'rsi', 'Sabra06G0035400' => 'sbr', 'Sabra13G0124500' => 'sbr', 'SalBow1G3107' => 'sbo', 'SalBow6G0410' => 'sbo', 'Sc06g0008100' => 'sci', 'Sc13g0001790' => 'sci', 'Sed0017574' => 'sed', 'Sed0019452' => 'sed', 'SEGI_02273' => 'sgi', 'SEGI_03863' => 'sgi', 'SEGI_04230' => 'sgi', 'SEGI_13690' => 'sgi', 'SEGI_13924' => 'sgi', 'SEGI_15745' => 'sgi', 'SEGI_18924' => 'sgi', 'SEGI_27991' => 'sgi', 'SEGI_30209' => 'sgi', 'SEGI_32700' => 'sgi', 'SEGI_36312' => 'sgi', 'SEGI_39007' => 'sgi', 'SGA_v2.0_scaffold20G09290' => 'sas', 'SGA_v2.0_scaffold69G23113' => 'sas', 'SHI11186' => 'shi', 'SMO239G0088' => 'smo', 'SMO337G0024' => 'smo', 'Solyc02g043860.3' => 'sly', 'Solyc04g015680.3' => 'sly', 'Solyc04g015690.4' => 'sly', 'Solyc09g055740.1' => 'sly', 'Sopen02g007490' => 'spe', 'Sopen04g007760' => 'spe', 'Sopen04g007770' => 'spe', 'Sp1g05610' => 'spa', 'Sp4g24050' => 'spa', 'Sp5g05130' => 'spa', 'Sp5g05140' => 'spa', 'TAR369G1057' => 'tar', 'TAR623G0919' => 'tar', 'TAR633G2160' => 'tar', 'TAR636G3238' => 'tar', 'THA.LOC104800786' => 'tha', 'THA.LOC104802114' => 'tha', 'THA.LOC104824443' => 'tha', 'Thecc.05G154200' => 'tca', 'Thecc.05G154400' => 'tca', 'Thecc.05G154700' => 'tca', 'Thecc.05G155200' => 'tca', 'Thecc.09G363300' => 'tca', 'Thhalv10005770m.g' => 'esa', 'Thhalv10006660m.g' => 'esa', 'Thhalv10009720m.g' => 'esa', 'Thhalv10016187m.g' => 'esa', 'TPR.G24864' => 'tpr', 'TPR.G27380' => 'tpr', 'TPR.G27384' => 'tpr', 'TPR.G29243' => 'tpr', 'TPR.G29646' => 'tpr', 'TPR.G36357' => 'tpr', 'TPR.G3704' => 'tpr', 'TPR.G3719' => 'tpr', 'TPR.G39257' => 'tpr', 'TPR.G39949' => 'tpr', 'TPR.G928' => 'tpr', 'TWI74G0219' => 'twi', 'TWI79G0222' => 'twi', 'unitig_22.g6039' => 'ugi', 'unitig_747.g21447' => 'ugi', 'unitig_747.g21448' => 'ugi', 'vmacro02881' => 'vma', 'vmacro07856' => 'vma', 'vmacro07857' => 'vma', 'vmacro07858' => 'vma', 'vmacro07859' => 'vma', 'vmacro07860' => 'vma', 'vmacro07861' => 'vma', 'vmacro22459' => 'vma', 'VMungo0540G0021' => 'vmu', 'VMungo1383G1826' => 'vmu', 'Zm00001eb151510' => 'zma', 'Zm00001eb324850' => 'zma', 'Zm00001eb369900' => 'zma', 'Zm00001eb395090' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001129' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001129' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001129' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001129' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001129', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '546', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p12490' => 'bna', 'A02p38070' => 'bna', 'A02p38190' => 'bna', 'A03p17810' => 'bna', 'A03p23440' => 'bna', 'A04p03100' => 'bna', 'A05p02530' => 'bna', 'A07p23430' => 'bna', 'A08p35850' => 'bna', 'A09p15610' => 'bna', 'A09p50340' => 'bna', 'A09p66710' => 'bna', 'A10p05450' => 'bna', 'Aa31LG10G12300' => 'aar', 'Aa31LG10G12310' => 'aar', 'Aa31LG1G23800' => 'aar', 'Aa31LG1G7970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1876' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.374' => 'aag', 'Actinidia09332' => 'ach', 'Actinidia09335' => 'ach', 'Actinidia09336' => 'ach', 'Actinidia11621' => 'ach', 'Actinidia11622' => 'ach', 'Actinidia25195' => 'ach', 'Actinidia25196' => 'ach', 'Ah.04g151760' => 'amhyb', 'AL1G16920' => 'aly', 'AL2G24780' => 'aly', 'AL4G12810' => 'aly', 'AL4G12820' => 'aly', 'AL4G39880' => 'aly', 'AL4G39890' => 'aly', 'AL4G40110' => 'aly', 'AL5G39030' => 'aly', 'AL5G39040' => 'aly', 'AL5G39050' => 'aly', 'AL7G46910' => 'aly', 'AL7G53150' => 'aly', 'Aqoxy1G00256' => 'aox', 'Aqoxy2G00701' => 'aox', 'Aqoxy5G03056' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1AE9PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2WDVD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA8THR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP07WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9HJFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V41UA4' => 'arhy', 'AT1G06900' => 'ath', 'AT2G41790' => 'ath', 'AT3G57460' => 'ath', 'AT3G57465' => 'ath', 'AT3G57470' => 'ath', 'AT5G01440' => 'ath', 'ATR0020G001' => 'atr', 'ATR0332G050' => 'atr', 'ATR0332G087' => 'atr', 'ATR0332G094' => 'atr', 'ATR0693G250' => 'atr', 'ATR0967G001' => 'atr', 'ATR1127G095' => 'atr', 'Atru.chr1.1085' => 'acertr', 'Atru.chr1.2504' => 'acertr', 'Atru.chr6.462' => 'acertr', 'AUR62009732' => 'cqu', 'AUR62024444' => 'cqu', 'AUR62026034' => 'cqu', 'AUR62036212' => 'cqu', 'BcaB02g06767' => 'bca', 'BcaB02g07601' => 'bca', 'BcaB02g07602' => 'bca', 'BcaB02g08315' => 'bca', 'BcaB03g13434' => 'bca', 'BcaB04g19613' => 'bca', 'BcaC02g09940' => 'bca', 'BcaC02g12494' => 'bca', 'BcaC03g17727' => 'bca', 'BcaC05g24658' => 'bca', 'BcaC07g40376' => 'bca', 'BcaC07g42040' => 'bca', 'BcaC07g42543' => 'bca', 'BcaC07g42547' => 'bca', 'BcaC08g44840' => 'bca', 'BcaC08g44841' => 'bca', 'BcaC08g44846' => 'bca', 'BcaC09g48997' => 'bca', 'BcaNung02836' => 'bca', 'BcaNung06244' => 'bca', 'BcaNung06830' => 'bca', 'BolC1t01799H' => 'bol', 'BolC1t01800H' => 'bol', 'BolC1t04327H' => 'bol', 'BolC1t04328H' => 'bol', 'BolC2t11804H' => 'bol', 'BolC2t11808H' => 'bol', 'BolC2t11810H' => 'bol', 'BolC4t21939H' => 'bol', 'BolC4t25051H' => 'bol', 'BolC5t29275H' => 'bol', 'BolC6t37595H' => 'bol', 'BolC6t37600H' => 'bol', 'BolC6t37601H' => 'bol', 'BolC8t50901H' => 'bol', 'BolC8t52622H' => 'bol', 'BolC9t53447H' => 'bol', 'BraA02t08792Z' => 'bra', 'BraA02t08796Z' => 'bra', 'BraA04t16033Z' => 'bra', 'BraA05t19246Z' => 'bra', 'BraA08t35492Z' => 'bra', 'BraA09t40487Z' => 'bra', 'BraA09t42010Z' => 'bra', 'BraA10t42809Z' => 'bra', 'C01p18720' => 'bna', 'C01p43680' => 'bna', 'C01p43690' => 'bna', 'C02p57350' => 'bna', 'C02p57360' => 'bna', 'C03p27960' => 'bna', 'C04p02990' => 'bna', 'C04p34960' => 'bna', 'C05p05030' => 'bna', 'C06p09320' => 'bna', 'C06p24480' => 'bna', 'C06p24520' => 'bna', 'C06p24530' => 'bna', 'C08p02730' => 'bna', 'C08p33010' => 'bna', 'C08p50940' => 'bna', 'CAN.G3.33' => 'can', 'CAN.G676.66' => 'can', 'CAN.G676.67' => 'can', 'CANSAT54G2955' => 'cansat', 'CANSAT80G2109' => 'cansat', 'CARHR006570' => 'chi', 'CARHR136870' => 'chi', 'CARHR167660' => 'chi', 'CARHR167670' => 'chi', 'CARHR167690' => 'chi', 'Carub.0001s0619' => 'cru', 'Carub.0004s0428' => 'cru', 'Carub.0004s2406' => 'cru', 'Carub.0005s2430' => 'cru', 'Carub.0005s2431' => 'cru', 'Ca_08459_v3' => 'car', 'Ca_13897_v3' => 'car', 'Ca_15041_v3' => 'car', 'Ca_23248_v3' => 'car', 'Ca_28606_v3' => 'car', 'Ca_30053_v3' => 'car', 'CBR_g12082' => 'cbr', 'CBR_g27959' => 'cbr', 'CBR_g45246' => 'cbr', 'CBR_g49619' => 'cbr', 'CBR_g49621' => 'cbr', 'Cc00_g06010' => 'ccan', 'Cc00_g10010' => 'ccan', 'Cc01_g15280' => 'ccan', 'Cc03_g06630' => 'ccan', 'Cc06_g17050' => 'ccan', 'Cc06_g17060' => 'ccan', 'CDE05G3018' => 'cde', 'CDE05G3167' => 'cde', 'CDE06G0445' => 'cde', 'Cfa011826' => 'cfa', 'Cfa016822' => 'cfa', 'Cfa023906' => 'cfa', 'Ciclev10000133m.g' => 'ccl', 'Ciclev10004240m.g' => 'ccl', 'Ciclev10004250m.g' => 'ccl', 'CiPaw.09G037700' => 'cil', 'CiPaw.10G033100' => 'cil', 'CiPaw.13G064200' => 'cil', 'ClCG02G019050' => 'cla', 'ClCG10G016980' => 'cla', 'COL.COLO4_06002' => 'col', 'COL.COLO4_11207' => 'col', 'COL.COLO4_13216' => 'col', 'COL.COLO4_28264' => 'col', 'COL.COLO4_28268' => 'col', 'COL.COLO4_28275' => 'col', 'Cpa.g.sc2.304' => 'cpa', 'Cpa.g.sc2.305' => 'cpa', 'Cpa.g.sc92.47' => 'cpa', 'Cre01.g034100' => 'cre', 'Cre01.g041855' => 'cre', 'Cre09.g386113' => 'cre', 'CsaV3_3G039410' => 'csa', 'CsaV3_6G019170' => 'csa', 'CSS0010940' => 'camsi', 'CSS0019735' => 'camsi', 'DCAR_004800' => 'dca', 'DCAR_020490' => 'dca', 'Dinv00382' => 'din', 'Dinv12479' => 'din', 'Dinv28728' => 'din', 'Dinv39591' => 'din', 'Dinv39593' => 'din', 'Dinv39598' => 'din', 'Duzib093G0063' => 'dzi', 'Duzib093G0335' => 'dzi', 'Duzib093G1038' => 'dzi', 'Duzib128G1487' => 'dzi', 'Duzib168G0079' => 'dzi', 'ECA247G0490' => 'eca', 'ECA247G0660' => 'eca', 'ECA247G0911' => 'eca', 'EL10Ac3g07087' => 'bvu', 'EL10Ac7g15852' => 'bvu', 'Eucgr.A02352' => 'egr', 'Eucgr.A02354' => 'egr', 'Eucgr.A02355' => 'egr', 'Eucgr.A02357' => 'egr', 'Eucgr.A02358' => 'egr', 'Eucgr.A02359' => 'egr', 'Eucgr.B04025' => 'egr', 'Eucgr.C03112' => 'egr', 'Eucgr.H02814' => 'egr', 'FAN01G1484' => 'fan', 'FAN02G2306' => 'fan', 'FAN04G0733' => 'fan', 'FAN05G4515' => 'fan', 'FAN06G3753' => 'fan', 'FAN08G0077' => 'fan', 'FAN09G1141' => 'fan', 'FAN11G1991' => 'fan', 'FAN11G2052' => 'fan', 'FAN11G2940' => 'fan', 'FAN11G3836' => 'fan', 'FAN13G0243' => 'fan', 'FAN13G1906' => 'fan', 'FAN13G3149' => 'fan', 'FAN16G0023' => 'fan', 'FAN16G3400' => 'fan', 'FAN18G1906' => 'fan', 'FAN18G3567' => 'fan', 'FAN21G2271' => 'fan', 'FAN21G2900' => 'fan', 'FvH4_3g40361' => 'fve', 'FvH4_3g40370' => 'fve', 'FvH4_3g40391' => 'fve', 'FvH4_3g40410' => 'fve', 'FvH4_3g40411' => 'fve', 'FvH4_3g40412' => 'fve', 'FvH4_3g40413' => 'fve', 'FvH4_3g40440' => 'fve', 'FvH4_3g41040' => 'fve', 'FvH4_5g00310' => 'fve', 'FvH4_6g23690' => 'fve', 'Glyma.03G137100' => 'gma', 'Glyma.11G160300' => 'gma', 'Glyma.18G053700' => 'gma', 'Glyma.19G139800' => 'gma', 'Gohir.A01G131400' => 'ghi', 'Gohir.A01G131500' => 'ghi', 'Gohir.A03G023300' => 'ghi', 'Gohir.A08G164850' => 'ghi', 'Gohir.D01G120700' => 'ghi', 'Gohir.D03G054201' => 'ghi', 'Gohir.D03G145400' => 'ghi', 'Gohir.D07G130166' => 'ghi', 'Gohir.D08G133750' => 'ghi', 'Gohir.D09G013866' => 'ghi', 'Gohir.D09G051901' => 'ghi', 'Gohir.D10G086832' => 'ghi', 'Gohir.D11G291701' => 'ghi', 'Gorai.001G201100' => 'gra', 'Gorai.002G147300' => 'gra', 'Gorai.002G147500' => 'gra', 'Gorai.003G152500' => 'gra', 'Gorai.006G004900' => 'gra', 'Gorai.007G260700' => 'gra', 'Gorai.009G402100' => 'gra', 'Gorai.009G417200' => 'gra', 'Gorai.011G096400' => 'gra', 'Gorai.012G121300' => 'gra', 'GSVIVG01024571001' => 'vvi', 'GSVIVG01033283001' => 'vvi', 'GSVIVG01033284001' => 'vvi', 'HanXRQChr08g0230671' => 'han', 'HanXRQChr10g0289411' => 'han', 'Haze_16414' => 'cav', 'Haze_16417' => 'cav', 'Haze_16419' => 'cav', 'Haze_19863' => 'cav', 'Haze_19866' => 'cav', 'Haze_24463' => 'cav', 'Hma1.2p1_0170F.1_g075000' => 'hma', 'Hma1.2p1_1168F.1_g263180' => 'hma', 'Hma1.2p1_1168F.1_g263190' => 'hma', 'HPP92_006786' => 'vpl', 'HPP92_006787' => 'vpl', 'HPP92_006788' => 'vpl', 'HPP92_007503' => 'vpl', 'HPP92_015907' => 'vpl', 'HPP92_015909' => 'vpl', 'HPP92_015932' => 'vpl', 'HPP92_027671' => 'vpl', 'HPP92_028209' => 'vpl', 'Hund05051' => 'sun', 'Hund19150' => 'sun', 'Hund24708' => 'sun', 'Lalb_Chr01g0017291' => 'lal', 'Lalb_Chr18g0054261' => 'lal', 'Lj1g0001320' => 'lja', 'Lj2C1101T10' => 'lonja', 'Lj2C384T5' => 'lonja', 'Lj2C384T6' => 'lonja', 'Lj2P1101T48' => 'lonja', 'Lj4g0007497' => 'lja', 'Lj6g0006618' => 'lja', 'Lju124C40G7' => 'lonja', 'Lsat_1_v5_gn_4_182701' => 'lsa', 'Lsat_1_v5_gn_4_78000' => 'lsa', 'Lsat_1_v5_gn_6_8680' => 'lsa', 'Lsat_1_v5_gn_6_8700' => 'lsa', 'Lsat_1_v5_gn_7_58040' => 'lsa', 'Lsat_1_v5_gn_9_13880' => 'lsa', 'Lsat_1_v5_gn_9_28860' => 'lsa', 'Manes.02G208660' => 'mes', 'Manes.08G050900' => 'mes', 'Manes.09G021401' => 'mes', 'Manes.09G021500' => 'mes', 'Mapoly0021s0007' => 'mpo', 'Mapoly0029s0118' => 'mpo', 'MBI02_g23135_MAGBIO' => 'mbi', 'MCO11G812' => 'mco', 'MD03G1052300' => 'mdo', 'MD09G1162200' => 'mdo', 'MD09G1162300' => 'mdo', 'MD10G1074700' => 'mdo', 'MD11G1054400' => 'mdo', 'MD12G1073300' => 'mdo', 'MD14G1071400' => 'mdo', 'MD14G1071600' => 'mdo', 'MD17G1069300' => 'mdo', 'Medtr3g466820' => 'mtr', 'Medtr5g095180' => 'mtr', 'Medtr7g057410' => 'mtr', 'Medtr7g091590' => 'mtr', 'MELO3C009685.2' => 'cme', 'MELO3C026877.2' => 'cme', 'Migut.D00820' => 'egut', 'Migut.J01762' => 'egut', 'MSTRG.18541' => 'ama', 'MSTRG.6511' => 'ama', 'MSTRG.6512' => 'ama', 'MSTRG.6516' => 'ama', 'MSTRG.6517' => 'ama', 'Nitab4.5_0000002g0190' => 'nta', 'Nitab4.5_0000733g0020' => 'nta', 'Nitab4.5_0000733g0050' => 'nta', 'Nitab4.5_0002620g0020' => 'nta', 'Nitab4.5_0005611g0030' => 'nta', 'Nitab4.5_0005611g0040' => 'nta', 'Nn2g10322' => 'nnu', 'Nn7g36265' => 'nnu', 'Nn7g36269' => 'nnu', 'Oeu000828.1' => 'oeu', 'Oeu015568.1' => 'oeu', 'Oeu015569.1' => 'oeu', 'Oeu055223.1' => 'oeu', 'Os01g0778800' => 'osa', 'Os01g0779100' => 'osa', 'Os03g0336300' => 'osa', 'Os07g0570100' => 'osa', 'Os07g0570300' => 'osa', 'Os07g0570500' => 'osa', 'Peaxi162Scf00044g01412' => 'pax', 'Peaxi162Scf00493g00005' => 'pax', 'Peaxi162Scf00960g00119' => 'pax', 'Peaxi162Scf00960g00120' => 'pax', 'PGR004G1628' => 'pgr', 'PGR004G1973' => 'pgr', 'PGR004G1988' => 'pgr', 'PGR004G2267' => 'pgr', 'PGR102G0317' => 'pgr', 'PGSC0003DMG400027247' => 'stu', 'PGSC0003DMG401027248' => 'stu', 'PGSC0003DMG402027248' => 'stu', 'Phvul.001G133200' => 'pvu', 'Phvul.006G077500' => 'pvu', 'Potri.006G050700' => 'ptr', 'Potri.013G154600' => 'ptr', 'Pp3c10_5860' => 'ppa', 'Pp3c14_4240' => 'ppa', 'Pp3c14_4243' => 'ppa', 'Pp3c16_8340' => 'ppa', 'Pp3c1_4220' => 'ppa', 'Pp3c5_6610' => 'ppa', 'Pp3c5_8950' => 'ppa', 'PRCOL_00003896' => 'pco', 'PRCOL_00006552' => 'pco', 'Prupe.6G041800' => 'ppe', 'Prupe.6G041900' => 'ppe', 'Prupe.7G061600' => 'ppe', 'Psat0s427g0040' => 'psa', 'Psat0s475g0040' => 'psa', 'Psat0s475g0080' => 'psa', 'Psat0s475g0120' => 'psa', 'Psat0s4995g0040' => 'psa', 'Psat0s6682g0040' => 'psa', 'Psat0s6682g0080' => 'psa', 'Psat0s6868g0120' => 'psa', 'Psat1g112160' => 'psa', 'Psat1g114160' => 'psa', 'Psat1g135520' => 'psa', 'Psat2g172400' => 'psa', 'Psat3g072640' => 'psa', 'Psat3g160720' => 'psa', 'Psat4g066560' => 'psa', 'Psat5g028240' => 'psa', 'Psat5g149400' => 'psa', 'PSO339G0703' => 'pso', 'PSO339G2454' => 'pso', 'PSO384G2839' => 'pso', 'PSO384G4550' => 'pso', 'PSO384G4551' => 'pso', 'PSO478G2702' => 'pso', 'QL01p024916' => 'qlo', 'RcHm_v2.0_Chr1g0321501' => 'rch', 'RcHm_v2.0_Chr1g0322391' => 'rch', 'RcHm_v2.0_Chr1g0322401' => 'rch', 'RcHm_v2.0_Chr1g0322811' => 'rch', 'RcHm_v2.0_Chr1g0333061' => 'rch', 'RcHm_v2.0_Chr1g0333071' => 'rch', 'RcHm_v2.0_Chr1g0333081' => 'rch', 'RcHm_v2.0_Chr1g0333871' => 'rch', 'RcHm_v2.0_Chr1g0333951' => 'rch', 'RcHm_v2.0_Chr1g0334011' => 'rch', 'RcHm_v2.0_Chr1g0334021' => 'rch', 'RcHm_v2.0_Chr1g0334031' => 'rch', 'RcHm_v2.0_Chr1g0334041' => 'rch', 'RcHm_v2.0_Chr1g0335131' => 'rch', 'RcHm_v2.0_Chr1g0335141' => 'rch', 'RcHm_v2.0_Chr1g0335171' => 'rch', 'RcHm_v2.0_Chr2g0132461' => 'rch', 'RcHm_v2.0_Chr2g0145491' => 'rch', 'RcHm_v2.0_Chr2g0151411' => 'rch', 'RcHm_v2.0_Chr3g0481841' => 'rch', 'RcHm_v2.0_Chr3g0482151' => 'rch', 'RcHm_v2.0_Chr3g0482171' => 'rch', 'RcHm_v2.0_Chr3g0492731' => 'rch', 'RcHm_v2.0_Chr5g0063901' => 'rch', 'RcHm_v2.0_Chr5g0072781' => 'rch', 'RcHm_v2.0_Chr5g0072791' => 'rch', 'RcHm_v2.0_Chr5g0072801' => 'rch', 'RcHm_v2.0_Chr5g0072811' => 'rch', 'RcHm_v2.0_Chr5g0072891' => 'rch', 'RcHm_v2.0_Chr5g0072931' => 'rch', 'RcHm_v2.0_Chr5g0072951' => 'rch', 'RcHm_v2.0_Chr5g0073041' => 'rch', 'RcHm_v2.0_Chr5g0073051' => 'rch', 'RcHm_v2.0_Chr5g0073061' => 'rch', 'RcHm_v2.0_Chr5g0073071' => 'rch', 'RcHm_v2.0_Chr5g0074151' => 'rch', 'RcHm_v2.0_Chr5g0074161' => 'rch', 'RcHm_v2.0_Chr5g0074171' => 'rch', 'RcHm_v2.0_Chr6g0278561' => 'rch', 'RcHm_v2.0_Chr7g0202261' => 'rch', 'Rhsim03G0021400' => 'rsi', 'Rhsim03G0022100' => 'rsi', 'Rhsim03G0023500' => 'rsi', 'Rhsim13G0059900' => 'rsi', 'Sabra06G0035400' => 'sbr', 'Sabra13G0124500' => 'sbr', 'SalBow1G3107' => 'sbo', 'SalBow6G0410' => 'sbo', 'Sc06g0008100' => 'sci', 'Sc13g0001790' => 'sci', 'Sed0017574' => 'sed', 'Sed0019452' => 'sed', 'SEGI_02273' => 'sgi', 'SEGI_03863' => 'sgi', 'SEGI_04230' => 'sgi', 'SEGI_13690' => 'sgi', 'SEGI_13924' => 'sgi', 'SEGI_15745' => 'sgi', 'SEGI_18924' => 'sgi', 'SEGI_27991' => 'sgi', 'SEGI_30209' => 'sgi', 'SEGI_32700' => 'sgi', 'SEGI_36312' => 'sgi', 'SEGI_39007' => 'sgi', 'SGA_v2.0_scaffold20G09290' => 'sas', 'SGA_v2.0_scaffold69G23113' => 'sas', 'SHI11186' => 'shi', 'SMO239G0088' => 'smo', 'SMO337G0024' => 'smo', 'Solyc02g043860.3' => 'sly', 'Solyc04g015680.3' => 'sly', 'Solyc04g015690.4' => 'sly', 'Solyc09g055740.1' => 'sly', 'Sopen02g007490' => 'spe', 'Sopen04g007760' => 'spe', 'Sopen04g007770' => 'spe', 'Sp1g05610' => 'spa', 'Sp4g24050' => 'spa', 'Sp5g05130' => 'spa', 'Sp5g05140' => 'spa', 'TAR369G1057' => 'tar', 'TAR623G0919' => 'tar', 'TAR633G2160' => 'tar', 'TAR636G3238' => 'tar', 'THA.LOC104800786' => 'tha', 'THA.LOC104802114' => 'tha', 'THA.LOC104824443' => 'tha', 'Thecc.05G154200' => 'tca', 'Thecc.05G154400' => 'tca', 'Thecc.05G154700' => 'tca', 'Thecc.05G155200' => 'tca', 'Thecc.09G363300' => 'tca', 'Thhalv10005770m.g' => 'esa', 'Thhalv10006660m.g' => 'esa', 'Thhalv10009720m.g' => 'esa', 'Thhalv10016187m.g' => 'esa', 'TPR.G24864' => 'tpr', 'TPR.G27380' => 'tpr', 'TPR.G27384' => 'tpr', 'TPR.G29243' => 'tpr', 'TPR.G29646' => 'tpr', 'TPR.G36357' => 'tpr', 'TPR.G3704' => 'tpr', 'TPR.G3719' => 'tpr', 'TPR.G39257' => 'tpr', 'TPR.G39949' => 'tpr', 'TPR.G928' => 'tpr', 'TWI74G0219' => 'twi', 'TWI79G0222' => 'twi', 'unitig_22.g6039' => 'ugi', 'unitig_747.g21447' => 'ugi', 'unitig_747.g21448' => 'ugi', 'vmacro02881' => 'vma', 'vmacro07856' => 'vma', 'vmacro07857' => 'vma', 'vmacro07858' => 'vma', 'vmacro07859' => 'vma', 'vmacro07860' => 'vma', 'vmacro07861' => 'vma', 'vmacro22459' => 'vma', 'VMungo0540G0021' => 'vmu', 'VMungo1383G1826' => 'vmu', 'Zm00001eb151510' => 'zma', 'Zm00001eb324850' => 'zma', 'Zm00001eb369900' => 'zma', 'Zm00001eb395090' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001129', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001129' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001129', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '546', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001129' ) ), 'genes' => array( 'A01p12490' => 'bna', 'A02p38070' => 'bna', 'A02p38190' => 'bna', 'A03p17810' => 'bna', 'A03p23440' => 'bna', 'A04p03100' => 'bna', 'A05p02530' => 'bna', 'A07p23430' => 'bna', 'A08p35850' => 'bna', 'A09p15610' => 'bna', 'A09p50340' => 'bna', 'A09p66710' => 'bna', 'A10p05450' => 'bna', 'Aa31LG10G12300' => 'aar', 'Aa31LG10G12310' => 'aar', 'Aa31LG1G23800' => 'aar', 'Aa31LG1G7970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1876' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.374' => 'aag', 'Actinidia09332' => 'ach', 'Actinidia09335' => 'ach', 'Actinidia09336' => 'ach', 'Actinidia11621' => 'ach', 'Actinidia11622' => 'ach', 'Actinidia25195' => 'ach', 'Actinidia25196' => 'ach', 'Ah.04g151760' => 'amhyb', 'AL1G16920' => 'aly', 'AL2G24780' => 'aly', 'AL4G12810' => 'aly', 'AL4G12820' => 'aly', 'AL4G39880' => 'aly', 'AL4G39890' => 'aly', 'AL4G40110' => 'aly', 'AL5G39030' => 'aly', 'AL5G39040' => 'aly', 'AL5G39050' => 'aly', 'AL7G46910' => 'aly', 'AL7G53150' => 'aly', 'Aqoxy1G00256' => 'aox', 'Aqoxy2G00701' => 'aox', 'Aqoxy5G03056' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1AE9PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2WDVD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA8THR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP07WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9HJFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V41UA4' => 'arhy', 'AT1G06900' => 'ath', 'AT2G41790' => 'ath', 'AT3G57460' => 'ath', 'AT3G57465' => 'ath', 'AT3G57470' => 'ath', 'AT5G01440' => 'ath', 'ATR0020G001' => 'atr', 'ATR0332G050' => 'atr', 'ATR0332G087' => 'atr', 'ATR0332G094' => 'atr', 'ATR0693G250' => 'atr', 'ATR0967G001' => 'atr', 'ATR1127G095' => 'atr', 'Atru.chr1.1085' => 'acertr', 'Atru.chr1.2504' => 'acertr', 'Atru.chr6.462' => 'acertr', 'AUR62009732' => 'cqu', 'AUR62024444' => 'cqu', 'AUR62026034' => 'cqu', 'AUR62036212' => 'cqu', 'BcaB02g06767' => 'bca', 'BcaB02g07601' => 'bca', 'BcaB02g07602' => 'bca', 'BcaB02g08315' => 'bca', 'BcaB03g13434' => 'bca', 'BcaB04g19613' => 'bca', 'BcaC02g09940' => 'bca', 'BcaC02g12494' => 'bca', 'BcaC03g17727' => 'bca', 'BcaC05g24658' => 'bca', 'BcaC07g40376' => 'bca', 'BcaC07g42040' => 'bca', 'BcaC07g42543' => 'bca', 'BcaC07g42547' => 'bca', 'BcaC08g44840' => 'bca', 'BcaC08g44841' => 'bca', 'BcaC08g44846' => 'bca', 'BcaC09g48997' => 'bca', 'BcaNung02836' => 'bca', 'BcaNung06244' => 'bca', 'BcaNung06830' => 'bca', 'BolC1t01799H' => 'bol', 'BolC1t01800H' => 'bol', 'BolC1t04327H' => 'bol', 'BolC1t04328H' => 'bol', 'BolC2t11804H' => 'bol', 'BolC2t11808H' => 'bol', 'BolC2t11810H' => 'bol', 'BolC4t21939H' => 'bol', 'BolC4t25051H' => 'bol', 'BolC5t29275H' => 'bol', 'BolC6t37595H' => 'bol', 'BolC6t37600H' => 'bol', 'BolC6t37601H' => 'bol', 'BolC8t50901H' => 'bol', 'BolC8t52622H' => 'bol', 'BolC9t53447H' => 'bol', 'BraA02t08792Z' => 'bra', 'BraA02t08796Z' => 'bra', 'BraA04t16033Z' => 'bra', 'BraA05t19246Z' => 'bra', 'BraA08t35492Z' => 'bra', 'BraA09t40487Z' => 'bra', 'BraA09t42010Z' => 'bra', 'BraA10t42809Z' => 'bra', 'C01p18720' => 'bna', 'C01p43680' => 'bna', 'C01p43690' => 'bna', 'C02p57350' => 'bna', 'C02p57360' => 'bna', 'C03p27960' => 'bna', 'C04p02990' => 'bna', 'C04p34960' => 'bna', 'C05p05030' => 'bna', 'C06p09320' => 'bna', 'C06p24480' => 'bna', 'C06p24520' => 'bna', 'C06p24530' => 'bna', 'C08p02730' => 'bna', 'C08p33010' => 'bna', 'C08p50940' => 'bna', 'CAN.G3.33' => 'can', 'CAN.G676.66' => 'can', 'CAN.G676.67' => 'can', 'CANSAT54G2955' => 'cansat', 'CANSAT80G2109' => 'cansat', 'CARHR006570' => 'chi', 'CARHR136870' => 'chi', 'CARHR167660' => 'chi', 'CARHR167670' => 'chi', 'CARHR167690' => 'chi', 'Carub.0001s0619' => 'cru', 'Carub.0004s0428' => 'cru', 'Carub.0004s2406' => 'cru', 'Carub.0005s2430' => 'cru', 'Carub.0005s2431' => 'cru', 'Ca_08459_v3' => 'car', 'Ca_13897_v3' => 'car', 'Ca_15041_v3' => 'car', 'Ca_23248_v3' => 'car', 'Ca_28606_v3' => 'car', 'Ca_30053_v3' => 'car', 'CBR_g12082' => 'cbr', 'CBR_g27959' => 'cbr', 'CBR_g45246' => 'cbr', 'CBR_g49619' => 'cbr', 'CBR_g49621' => 'cbr', 'Cc00_g06010' => 'ccan', 'Cc00_g10010' => 'ccan', 'Cc01_g15280' => 'ccan', 'Cc03_g06630' => 'ccan', 'Cc06_g17050' => 'ccan', 'Cc06_g17060' => 'ccan', 'CDE05G3018' => 'cde', 'CDE05G3167' => 'cde', 'CDE06G0445' => 'cde', 'Cfa011826' => 'cfa', 'Cfa016822' => 'cfa', 'Cfa023906' => 'cfa', 'Ciclev10000133m.g' => 'ccl', 'Ciclev10004240m.g' => 'ccl', 'Ciclev10004250m.g' => 'ccl', 'CiPaw.09G037700' => 'cil', 'CiPaw.10G033100' => 'cil', 'CiPaw.13G064200' => 'cil', 'ClCG02G019050' => 'cla', 'ClCG10G016980' => 'cla', 'COL.COLO4_06002' => 'col', 'COL.COLO4_11207' => 'col', 'COL.COLO4_13216' => 'col', 'COL.COLO4_28264' => 'col', 'COL.COLO4_28268' => 'col', 'COL.COLO4_28275' => 'col', 'Cpa.g.sc2.304' => 'cpa', 'Cpa.g.sc2.305' => 'cpa', 'Cpa.g.sc92.47' => 'cpa', 'Cre01.g034100' => 'cre', 'Cre01.g041855' => 'cre', 'Cre09.g386113' => 'cre', 'CsaV3_3G039410' => 'csa', 'CsaV3_6G019170' => 'csa', 'CSS0010940' => 'camsi', 'CSS0019735' => 'camsi', 'DCAR_004800' => 'dca', 'DCAR_020490' => 'dca', 'Dinv00382' => 'din', 'Dinv12479' => 'din', 'Dinv28728' => 'din', 'Dinv39591' => 'din', 'Dinv39593' => 'din', 'Dinv39598' => 'din', 'Duzib093G0063' => 'dzi', 'Duzib093G0335' => 'dzi', 'Duzib093G1038' => 'dzi', 'Duzib128G1487' => 'dzi', 'Duzib168G0079' => 'dzi', 'ECA247G0490' => 'eca', 'ECA247G0660' => 'eca', 'ECA247G0911' => 'eca', 'EL10Ac3g07087' => 'bvu', 'EL10Ac7g15852' => 'bvu', 'Eucgr.A02352' => 'egr', 'Eucgr.A02354' => 'egr', 'Eucgr.A02355' => 'egr', 'Eucgr.A02357' => 'egr', 'Eucgr.A02358' => 'egr', 'Eucgr.A02359' => 'egr', 'Eucgr.B04025' => 'egr', 'Eucgr.C03112' => 'egr', 'Eucgr.H02814' => 'egr', 'FAN01G1484' => 'fan', 'FAN02G2306' => 'fan', 'FAN04G0733' => 'fan', 'FAN05G4515' => 'fan', 'FAN06G3753' => 'fan', 'FAN08G0077' => 'fan', 'FAN09G1141' => 'fan', 'FAN11G1991' => 'fan', 'FAN11G2052' => 'fan', 'FAN11G2940' => 'fan', 'FAN11G3836' => 'fan', 'FAN13G0243' => 'fan', 'FAN13G1906' => 'fan', 'FAN13G3149' => 'fan', 'FAN16G0023' => 'fan', 'FAN16G3400' => 'fan', 'FAN18G1906' => 'fan', 'FAN18G3567' => 'fan', 'FAN21G2271' => 'fan', 'FAN21G2900' => 'fan', 'FvH4_3g40361' => 'fve', 'FvH4_3g40370' => 'fve', 'FvH4_3g40391' => 'fve', 'FvH4_3g40410' => 'fve', 'FvH4_3g40411' => 'fve', 'FvH4_3g40412' => 'fve', 'FvH4_3g40413' => 'fve', 'FvH4_3g40440' => 'fve', 'FvH4_3g41040' => 'fve', 'FvH4_5g00310' => 'fve', 'FvH4_6g23690' => 'fve', 'Glyma.03G137100' => 'gma', 'Glyma.11G160300' => 'gma', 'Glyma.18G053700' => 'gma', 'Glyma.19G139800' => 'gma', 'Gohir.A01G131400' => 'ghi', 'Gohir.A01G131500' => 'ghi', 'Gohir.A03G023300' => 'ghi', 'Gohir.A08G164850' => 'ghi', 'Gohir.D01G120700' => 'ghi', 'Gohir.D03G054201' => 'ghi', 'Gohir.D03G145400' => 'ghi', 'Gohir.D07G130166' => 'ghi', 'Gohir.D08G133750' => 'ghi', 'Gohir.D09G013866' => 'ghi', 'Gohir.D09G051901' => 'ghi', 'Gohir.D10G086832' => 'ghi', 'Gohir.D11G291701' => 'ghi', 'Gorai.001G201100' => 'gra', 'Gorai.002G147300' => 'gra', 'Gorai.002G147500' => 'gra', 'Gorai.003G152500' => 'gra', 'Gorai.006G004900' => 'gra', 'Gorai.007G260700' => 'gra', 'Gorai.009G402100' => 'gra', 'Gorai.009G417200' => 'gra', 'Gorai.011G096400' => 'gra', 'Gorai.012G121300' => 'gra', 'GSVIVG01024571001' => 'vvi', 'GSVIVG01033283001' => 'vvi', 'GSVIVG01033284001' => 'vvi', 'HanXRQChr08g0230671' => 'han', 'HanXRQChr10g0289411' => 'han', 'Haze_16414' => 'cav', 'Haze_16417' => 'cav', 'Haze_16419' => 'cav', 'Haze_19863' => 'cav', 'Haze_19866' => 'cav', 'Haze_24463' => 'cav', 'Hma1.2p1_0170F.1_g075000' => 'hma', 'Hma1.2p1_1168F.1_g263180' => 'hma', 'Hma1.2p1_1168F.1_g263190' => 'hma', 'HPP92_006786' => 'vpl', 'HPP92_006787' => 'vpl', 'HPP92_006788' => 'vpl', 'HPP92_007503' => 'vpl', 'HPP92_015907' => 'vpl', 'HPP92_015909' => 'vpl', 'HPP92_015932' => 'vpl', 'HPP92_027671' => 'vpl', 'HPP92_028209' => 'vpl', 'Hund05051' => 'sun', 'Hund19150' => 'sun', 'Hund24708' => 'sun', 'Lalb_Chr01g0017291' => 'lal', 'Lalb_Chr18g0054261' => 'lal', 'Lj1g0001320' => 'lja', 'Lj2C1101T10' => 'lonja', 'Lj2C384T5' => 'lonja', 'Lj2C384T6' => 'lonja', 'Lj2P1101T48' => 'lonja', 'Lj4g0007497' => 'lja', 'Lj6g0006618' => 'lja', 'Lju124C40G7' => 'lonja', 'Lsat_1_v5_gn_4_182701' => 'lsa', 'Lsat_1_v5_gn_4_78000' => 'lsa', 'Lsat_1_v5_gn_6_8680' => 'lsa', 'Lsat_1_v5_gn_6_8700' => 'lsa', 'Lsat_1_v5_gn_7_58040' => 'lsa', 'Lsat_1_v5_gn_9_13880' => 'lsa', 'Lsat_1_v5_gn_9_28860' => 'lsa', 'Manes.02G208660' => 'mes', 'Manes.08G050900' => 'mes', 'Manes.09G021401' => 'mes', 'Manes.09G021500' => 'mes', 'Mapoly0021s0007' => 'mpo', 'Mapoly0029s0118' => 'mpo', 'MBI02_g23135_MAGBIO' => 'mbi', 'MCO11G812' => 'mco', 'MD03G1052300' => 'mdo', 'MD09G1162200' => 'mdo', 'MD09G1162300' => 'mdo', 'MD10G1074700' => 'mdo', 'MD11G1054400' => 'mdo', 'MD12G1073300' => 'mdo', 'MD14G1071400' => 'mdo', 'MD14G1071600' => 'mdo', 'MD17G1069300' => 'mdo', 'Medtr3g466820' => 'mtr', 'Medtr5g095180' => 'mtr', 'Medtr7g057410' => 'mtr', 'Medtr7g091590' => 'mtr', 'MELO3C009685.2' => 'cme', 'MELO3C026877.2' => 'cme', 'Migut.D00820' => 'egut', 'Migut.J01762' => 'egut', 'MSTRG.18541' => 'ama', 'MSTRG.6511' => 'ama', 'MSTRG.6512' => 'ama', 'MSTRG.6516' => 'ama', 'MSTRG.6517' => 'ama', 'Nitab4.5_0000002g0190' => 'nta', 'Nitab4.5_0000733g0020' => 'nta', 'Nitab4.5_0000733g0050' => 'nta', 'Nitab4.5_0002620g0020' => 'nta', 'Nitab4.5_0005611g0030' => 'nta', 'Nitab4.5_0005611g0040' => 'nta', 'Nn2g10322' => 'nnu', 'Nn7g36265' => 'nnu', 'Nn7g36269' => 'nnu', 'Oeu000828.1' => 'oeu', 'Oeu015568.1' => 'oeu', 'Oeu015569.1' => 'oeu', 'Oeu055223.1' => 'oeu', 'Os01g0778800' => 'osa', 'Os01g0779100' => 'osa', 'Os03g0336300' => 'osa', 'Os07g0570100' => 'osa', 'Os07g0570300' => 'osa', 'Os07g0570500' => 'osa', 'Peaxi162Scf00044g01412' => 'pax', 'Peaxi162Scf00493g00005' => 'pax', 'Peaxi162Scf00960g00119' => 'pax', 'Peaxi162Scf00960g00120' => 'pax', 'PGR004G1628' => 'pgr', 'PGR004G1973' => 'pgr', 'PGR004G1988' => 'pgr', 'PGR004G2267' => 'pgr', 'PGR102G0317' => 'pgr', 'PGSC0003DMG400027247' => 'stu', 'PGSC0003DMG401027248' => 'stu', 'PGSC0003DMG402027248' => 'stu', 'Phvul.001G133200' => 'pvu', 'Phvul.006G077500' => 'pvu', 'Potri.006G050700' => 'ptr', 'Potri.013G154600' => 'ptr', 'Pp3c10_5860' => 'ppa', 'Pp3c14_4240' => 'ppa', 'Pp3c14_4243' => 'ppa', 'Pp3c16_8340' => 'ppa', 'Pp3c1_4220' => 'ppa', 'Pp3c5_6610' => 'ppa', 'Pp3c5_8950' => 'ppa', 'PRCOL_00003896' => 'pco', 'PRCOL_00006552' => 'pco', 'Prupe.6G041800' => 'ppe', 'Prupe.6G041900' => 'ppe', 'Prupe.7G061600' => 'ppe', 'Psat0s427g0040' => 'psa', 'Psat0s475g0040' => 'psa', 'Psat0s475g0080' => 'psa', 'Psat0s475g0120' => 'psa', 'Psat0s4995g0040' => 'psa', 'Psat0s6682g0040' => 'psa', 'Psat0s6682g0080' => 'psa', 'Psat0s6868g0120' => 'psa', 'Psat1g112160' => 'psa', 'Psat1g114160' => 'psa', 'Psat1g135520' => 'psa', 'Psat2g172400' => 'psa', 'Psat3g072640' => 'psa', 'Psat3g160720' => 'psa', 'Psat4g066560' => 'psa', 'Psat5g028240' => 'psa', 'Psat5g149400' => 'psa', 'PSO339G0703' => 'pso', 'PSO339G2454' => 'pso', 'PSO384G2839' => 'pso', 'PSO384G4550' => 'pso', 'PSO384G4551' => 'pso', 'PSO478G2702' => 'pso', 'QL01p024916' => 'qlo', 'RcHm_v2.0_Chr1g0321501' => 'rch', 'RcHm_v2.0_Chr1g0322391' => 'rch', 'RcHm_v2.0_Chr1g0322401' => 'rch', 'RcHm_v2.0_Chr1g0322811' => 'rch', 'RcHm_v2.0_Chr1g0333061' => 'rch', 'RcHm_v2.0_Chr1g0333071' => 'rch', 'RcHm_v2.0_Chr1g0333081' => 'rch', 'RcHm_v2.0_Chr1g0333871' => 'rch', 'RcHm_v2.0_Chr1g0333951' => 'rch', 'RcHm_v2.0_Chr1g0334011' => 'rch', 'RcHm_v2.0_Chr1g0334021' => 'rch', 'RcHm_v2.0_Chr1g0334031' => 'rch', 'RcHm_v2.0_Chr1g0334041' => 'rch', 'RcHm_v2.0_Chr1g0335131' => 'rch', 'RcHm_v2.0_Chr1g0335141' => 'rch', 'RcHm_v2.0_Chr1g0335171' => 'rch', 'RcHm_v2.0_Chr2g0132461' => 'rch', 'RcHm_v2.0_Chr2g0145491' => 'rch', 'RcHm_v2.0_Chr2g0151411' => 'rch', 'RcHm_v2.0_Chr3g0481841' => 'rch', 'RcHm_v2.0_Chr3g0482151' => 'rch', 'RcHm_v2.0_Chr3g0482171' => 'rch', 'RcHm_v2.0_Chr3g0492731' => 'rch', 'RcHm_v2.0_Chr5g0063901' => 'rch', 'RcHm_v2.0_Chr5g0072781' => 'rch', 'RcHm_v2.0_Chr5g0072791' => 'rch', 'RcHm_v2.0_Chr5g0072801' => 'rch', 'RcHm_v2.0_Chr5g0072811' => 'rch', 'RcHm_v2.0_Chr5g0072891' => 'rch', 'RcHm_v2.0_Chr5g0072931' => 'rch', 'RcHm_v2.0_Chr5g0072951' => 'rch', 'RcHm_v2.0_Chr5g0073041' => 'rch', 'RcHm_v2.0_Chr5g0073051' => 'rch', 'RcHm_v2.0_Chr5g0073061' => 'rch', 'RcHm_v2.0_Chr5g0073071' => 'rch', 'RcHm_v2.0_Chr5g0074151' => 'rch', 'RcHm_v2.0_Chr5g0074161' => 'rch', 'RcHm_v2.0_Chr5g0074171' => 'rch', 'RcHm_v2.0_Chr6g0278561' => 'rch', 'RcHm_v2.0_Chr7g0202261' => 'rch', 'Rhsim03G0021400' => 'rsi', 'Rhsim03G0022100' => 'rsi', 'Rhsim03G0023500' => 'rsi', 'Rhsim13G0059900' => 'rsi', 'Sabra06G0035400' => 'sbr', 'Sabra13G0124500' => 'sbr', 'SalBow1G3107' => 'sbo', 'SalBow6G0410' => 'sbo', 'Sc06g0008100' => 'sci', 'Sc13g0001790' => 'sci', 'Sed0017574' => 'sed', 'Sed0019452' => 'sed', 'SEGI_02273' => 'sgi', 'SEGI_03863' => 'sgi', 'SEGI_04230' => 'sgi', 'SEGI_13690' => 'sgi', 'SEGI_13924' => 'sgi', 'SEGI_15745' => 'sgi', 'SEGI_18924' => 'sgi', 'SEGI_27991' => 'sgi', 'SEGI_30209' => 'sgi', 'SEGI_32700' => 'sgi', 'SEGI_36312' => 'sgi', 'SEGI_39007' => 'sgi', 'SGA_v2.0_scaffold20G09290' => 'sas', 'SGA_v2.0_scaffold69G23113' => 'sas', 'SHI11186' => 'shi', 'SMO239G0088' => 'smo', 'SMO337G0024' => 'smo', 'Solyc02g043860.3' => 'sly', 'Solyc04g015680.3' => 'sly', 'Solyc04g015690.4' => 'sly', 'Solyc09g055740.1' => 'sly', 'Sopen02g007490' => 'spe', 'Sopen04g007760' => 'spe', 'Sopen04g007770' => 'spe', 'Sp1g05610' => 'spa', 'Sp4g24050' => 'spa', 'Sp5g05130' => 'spa', 'Sp5g05140' => 'spa', 'TAR369G1057' => 'tar', 'TAR623G0919' => 'tar', 'TAR633G2160' => 'tar', 'TAR636G3238' => 'tar', 'THA.LOC104800786' => 'tha', 'THA.LOC104802114' => 'tha', 'THA.LOC104824443' => 'tha', 'Thecc.05G154200' => 'tca', 'Thecc.05G154400' => 'tca', 'Thecc.05G154700' => 'tca', 'Thecc.05G155200' => 'tca', 'Thecc.09G363300' => 'tca', 'Thhalv10005770m.g' => 'esa', 'Thhalv10006660m.g' => 'esa', 'Thhalv10009720m.g' => 'esa', 'Thhalv10016187m.g' => 'esa', 'TPR.G24864' => 'tpr', 'TPR.G27380' => 'tpr', 'TPR.G27384' => 'tpr', 'TPR.G29243' => 'tpr', 'TPR.G29646' => 'tpr', 'TPR.G36357' => 'tpr', 'TPR.G3704' => 'tpr', 'TPR.G3719' => 'tpr', 'TPR.G39257' => 'tpr', 'TPR.G39949' => 'tpr', 'TPR.G928' => 'tpr', 'TWI74G0219' => 'twi', 'TWI79G0222' => 'twi', 'unitig_22.g6039' => 'ugi', 'unitig_747.g21447' => 'ugi', 'unitig_747.g21448' => 'ugi', 'vmacro02881' => 'vma', 'vmacro07856' => 'vma', 'vmacro07857' => 'vma', 'vmacro07858' => 'vma', 'vmacro07859' => 'vma', 'vmacro07860' => 'vma', 'vmacro07861' => 'vma', 'vmacro22459' => 'vma', 'VMungo0540G0021' => 'vmu', 'VMungo1383G1826' => 'vmu', 'Zm00001eb151510' => 'zma', 'Zm00001eb324850' => 'zma', 'Zm00001eb369900' => 'zma', 'Zm00001eb395090' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001129' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001129' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001129' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001129' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001129', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '546', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p12490' => 'bna', 'A02p38070' => 'bna', 'A02p38190' => 'bna', 'A03p17810' => 'bna', 'A03p23440' => 'bna', 'A04p03100' => 'bna', 'A05p02530' => 'bna', 'A07p23430' => 'bna', 'A08p35850' => 'bna', 'A09p15610' => 'bna', 'A09p50340' => 'bna', 'A09p66710' => 'bna', 'A10p05450' => 'bna', 'Aa31LG10G12300' => 'aar', 'Aa31LG10G12310' => 'aar', 'Aa31LG1G23800' => 'aar', 'Aa31LG1G7970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1876' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.374' => 'aag', 'Actinidia09332' => 'ach', 'Actinidia09335' => 'ach', 'Actinidia09336' => 'ach', 'Actinidia11621' => 'ach', 'Actinidia11622' => 'ach', 'Actinidia25195' => 'ach', 'Actinidia25196' => 'ach', 'Ah.04g151760' => 'amhyb', 'AL1G16920' => 'aly', 'AL2G24780' => 'aly', 'AL4G12810' => 'aly', 'AL4G12820' => 'aly', 'AL4G39880' => 'aly', 'AL4G39890' => 'aly', 'AL4G40110' => 'aly', 'AL5G39030' => 'aly', 'AL5G39040' => 'aly', 'AL5G39050' => 'aly', 'AL7G46910' => 'aly', 'AL7G53150' => 'aly', 'Aqoxy1G00256' => 'aox', 'Aqoxy2G00701' => 'aox', 'Aqoxy5G03056' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1AE9PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2WDVD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA8THR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP07WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9HJFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V41UA4' => 'arhy', 'AT1G06900' => 'ath', 'AT2G41790' => 'ath', 'AT3G57460' => 'ath', 'AT3G57465' => 'ath', 'AT3G57470' => 'ath', 'AT5G01440' => 'ath', 'ATR0020G001' => 'atr', 'ATR0332G050' => 'atr', 'ATR0332G087' => 'atr', 'ATR0332G094' => 'atr', 'ATR0693G250' => 'atr', 'ATR0967G001' => 'atr', 'ATR1127G095' => 'atr', 'Atru.chr1.1085' => 'acertr', 'Atru.chr1.2504' => 'acertr', 'Atru.chr6.462' => 'acertr', 'AUR62009732' => 'cqu', 'AUR62024444' => 'cqu', 'AUR62026034' => 'cqu', 'AUR62036212' => 'cqu', 'BcaB02g06767' => 'bca', 'BcaB02g07601' => 'bca', 'BcaB02g07602' => 'bca', 'BcaB02g08315' => 'bca', 'BcaB03g13434' => 'bca', 'BcaB04g19613' => 'bca', 'BcaC02g09940' => 'bca', 'BcaC02g12494' => 'bca', 'BcaC03g17727' => 'bca', 'BcaC05g24658' => 'bca', 'BcaC07g40376' => 'bca', 'BcaC07g42040' => 'bca', 'BcaC07g42543' => 'bca', 'BcaC07g42547' => 'bca', 'BcaC08g44840' => 'bca', 'BcaC08g44841' => 'bca', 'BcaC08g44846' => 'bca', 'BcaC09g48997' => 'bca', 'BcaNung02836' => 'bca', 'BcaNung06244' => 'bca', 'BcaNung06830' => 'bca', 'BolC1t01799H' => 'bol', 'BolC1t01800H' => 'bol', 'BolC1t04327H' => 'bol', 'BolC1t04328H' => 'bol', 'BolC2t11804H' => 'bol', 'BolC2t11808H' => 'bol', 'BolC2t11810H' => 'bol', 'BolC4t21939H' => 'bol', 'BolC4t25051H' => 'bol', 'BolC5t29275H' => 'bol', 'BolC6t37595H' => 'bol', 'BolC6t37600H' => 'bol', 'BolC6t37601H' => 'bol', 'BolC8t50901H' => 'bol', 'BolC8t52622H' => 'bol', 'BolC9t53447H' => 'bol', 'BraA02t08792Z' => 'bra', 'BraA02t08796Z' => 'bra', 'BraA04t16033Z' => 'bra', 'BraA05t19246Z' => 'bra', 'BraA08t35492Z' => 'bra', 'BraA09t40487Z' => 'bra', 'BraA09t42010Z' => 'bra', 'BraA10t42809Z' => 'bra', 'C01p18720' => 'bna', 'C01p43680' => 'bna', 'C01p43690' => 'bna', 'C02p57350' => 'bna', 'C02p57360' => 'bna', 'C03p27960' => 'bna', 'C04p02990' => 'bna', 'C04p34960' => 'bna', 'C05p05030' => 'bna', 'C06p09320' => 'bna', 'C06p24480' => 'bna', 'C06p24520' => 'bna', 'C06p24530' => 'bna', 'C08p02730' => 'bna', 'C08p33010' => 'bna', 'C08p50940' => 'bna', 'CAN.G3.33' => 'can', 'CAN.G676.66' => 'can', 'CAN.G676.67' => 'can', 'CANSAT54G2955' => 'cansat', 'CANSAT80G2109' => 'cansat', 'CARHR006570' => 'chi', 'CARHR136870' => 'chi', 'CARHR167660' => 'chi', 'CARHR167670' => 'chi', 'CARHR167690' => 'chi', 'Carub.0001s0619' => 'cru', 'Carub.0004s0428' => 'cru', 'Carub.0004s2406' => 'cru', 'Carub.0005s2430' => 'cru', 'Carub.0005s2431' => 'cru', 'Ca_08459_v3' => 'car', 'Ca_13897_v3' => 'car', 'Ca_15041_v3' => 'car', 'Ca_23248_v3' => 'car', 'Ca_28606_v3' => 'car', 'Ca_30053_v3' => 'car', 'CBR_g12082' => 'cbr', 'CBR_g27959' => 'cbr', 'CBR_g45246' => 'cbr', 'CBR_g49619' => 'cbr', 'CBR_g49621' => 'cbr', 'Cc00_g06010' => 'ccan', 'Cc00_g10010' => 'ccan', 'Cc01_g15280' => 'ccan', 'Cc03_g06630' => 'ccan', 'Cc06_g17050' => 'ccan', 'Cc06_g17060' => 'ccan', 'CDE05G3018' => 'cde', 'CDE05G3167' => 'cde', 'CDE06G0445' => 'cde', 'Cfa011826' => 'cfa', 'Cfa016822' => 'cfa', 'Cfa023906' => 'cfa', 'Ciclev10000133m.g' => 'ccl', 'Ciclev10004240m.g' => 'ccl', 'Ciclev10004250m.g' => 'ccl', 'CiPaw.09G037700' => 'cil', 'CiPaw.10G033100' => 'cil', 'CiPaw.13G064200' => 'cil', 'ClCG02G019050' => 'cla', 'ClCG10G016980' => 'cla', 'COL.COLO4_06002' => 'col', 'COL.COLO4_11207' => 'col', 'COL.COLO4_13216' => 'col', 'COL.COLO4_28264' => 'col', 'COL.COLO4_28268' => 'col', 'COL.COLO4_28275' => 'col', 'Cpa.g.sc2.304' => 'cpa', 'Cpa.g.sc2.305' => 'cpa', 'Cpa.g.sc92.47' => 'cpa', 'Cre01.g034100' => 'cre', 'Cre01.g041855' => 'cre', 'Cre09.g386113' => 'cre', 'CsaV3_3G039410' => 'csa', 'CsaV3_6G019170' => 'csa', 'CSS0010940' => 'camsi', 'CSS0019735' => 'camsi', 'DCAR_004800' => 'dca', 'DCAR_020490' => 'dca', 'Dinv00382' => 'din', 'Dinv12479' => 'din', 'Dinv28728' => 'din', 'Dinv39591' => 'din', 'Dinv39593' => 'din', 'Dinv39598' => 'din', 'Duzib093G0063' => 'dzi', 'Duzib093G0335' => 'dzi', 'Duzib093G1038' => 'dzi', 'Duzib128G1487' => 'dzi', 'Duzib168G0079' => 'dzi', 'ECA247G0490' => 'eca', 'ECA247G0660' => 'eca', 'ECA247G0911' => 'eca', 'EL10Ac3g07087' => 'bvu', 'EL10Ac7g15852' => 'bvu', 'Eucgr.A02352' => 'egr', 'Eucgr.A02354' => 'egr', 'Eucgr.A02355' => 'egr', 'Eucgr.A02357' => 'egr', 'Eucgr.A02358' => 'egr', 'Eucgr.A02359' => 'egr', 'Eucgr.B04025' => 'egr', 'Eucgr.C03112' => 'egr', 'Eucgr.H02814' => 'egr', 'FAN01G1484' => 'fan', 'FAN02G2306' => 'fan', 'FAN04G0733' => 'fan', 'FAN05G4515' => 'fan', 'FAN06G3753' => 'fan', 'FAN08G0077' => 'fan', 'FAN09G1141' => 'fan', 'FAN11G1991' => 'fan', 'FAN11G2052' => 'fan', 'FAN11G2940' => 'fan', 'FAN11G3836' => 'fan', 'FAN13G0243' => 'fan', 'FAN13G1906' => 'fan', 'FAN13G3149' => 'fan', 'FAN16G0023' => 'fan', 'FAN16G3400' => 'fan', 'FAN18G1906' => 'fan', 'FAN18G3567' => 'fan', 'FAN21G2271' => 'fan', 'FAN21G2900' => 'fan', 'FvH4_3g40361' => 'fve', 'FvH4_3g40370' => 'fve', 'FvH4_3g40391' => 'fve', 'FvH4_3g40410' => 'fve', 'FvH4_3g40411' => 'fve', 'FvH4_3g40412' => 'fve', 'FvH4_3g40413' => 'fve', 'FvH4_3g40440' => 'fve', 'FvH4_3g41040' => 'fve', 'FvH4_5g00310' => 'fve', 'FvH4_6g23690' => 'fve', 'Glyma.03G137100' => 'gma', 'Glyma.11G160300' => 'gma', 'Glyma.18G053700' => 'gma', 'Glyma.19G139800' => 'gma', 'Gohir.A01G131400' => 'ghi', 'Gohir.A01G131500' => 'ghi', 'Gohir.A03G023300' => 'ghi', 'Gohir.A08G164850' => 'ghi', 'Gohir.D01G120700' => 'ghi', 'Gohir.D03G054201' => 'ghi', 'Gohir.D03G145400' => 'ghi', 'Gohir.D07G130166' => 'ghi', 'Gohir.D08G133750' => 'ghi', 'Gohir.D09G013866' => 'ghi', 'Gohir.D09G051901' => 'ghi', 'Gohir.D10G086832' => 'ghi', 'Gohir.D11G291701' => 'ghi', 'Gorai.001G201100' => 'gra', 'Gorai.002G147300' => 'gra', 'Gorai.002G147500' => 'gra', 'Gorai.003G152500' => 'gra', 'Gorai.006G004900' => 'gra', 'Gorai.007G260700' => 'gra', 'Gorai.009G402100' => 'gra', 'Gorai.009G417200' => 'gra', 'Gorai.011G096400' => 'gra', 'Gorai.012G121300' => 'gra', 'GSVIVG01024571001' => 'vvi', 'GSVIVG01033283001' => 'vvi', 'GSVIVG01033284001' => 'vvi', 'HanXRQChr08g0230671' => 'han', 'HanXRQChr10g0289411' => 'han', 'Haze_16414' => 'cav', 'Haze_16417' => 'cav', 'Haze_16419' => 'cav', 'Haze_19863' => 'cav', 'Haze_19866' => 'cav', 'Haze_24463' => 'cav', 'Hma1.2p1_0170F.1_g075000' => 'hma', 'Hma1.2p1_1168F.1_g263180' => 'hma', 'Hma1.2p1_1168F.1_g263190' => 'hma', 'HPP92_006786' => 'vpl', 'HPP92_006787' => 'vpl', 'HPP92_006788' => 'vpl', 'HPP92_007503' => 'vpl', 'HPP92_015907' => 'vpl', 'HPP92_015909' => 'vpl', 'HPP92_015932' => 'vpl', 'HPP92_027671' => 'vpl', 'HPP92_028209' => 'vpl', 'Hund05051' => 'sun', 'Hund19150' => 'sun', 'Hund24708' => 'sun', 'Lalb_Chr01g0017291' => 'lal', 'Lalb_Chr18g0054261' => 'lal', 'Lj1g0001320' => 'lja', 'Lj2C1101T10' => 'lonja', 'Lj2C384T5' => 'lonja', 'Lj2C384T6' => 'lonja', 'Lj2P1101T48' => 'lonja', 'Lj4g0007497' => 'lja', 'Lj6g0006618' => 'lja', 'Lju124C40G7' => 'lonja', 'Lsat_1_v5_gn_4_182701' => 'lsa', 'Lsat_1_v5_gn_4_78000' => 'lsa', 'Lsat_1_v5_gn_6_8680' => 'lsa', 'Lsat_1_v5_gn_6_8700' => 'lsa', 'Lsat_1_v5_gn_7_58040' => 'lsa', 'Lsat_1_v5_gn_9_13880' => 'lsa', 'Lsat_1_v5_gn_9_28860' => 'lsa', 'Manes.02G208660' => 'mes', 'Manes.08G050900' => 'mes', 'Manes.09G021401' => 'mes', 'Manes.09G021500' => 'mes', 'Mapoly0021s0007' => 'mpo', 'Mapoly0029s0118' => 'mpo', 'MBI02_g23135_MAGBIO' => 'mbi', 'MCO11G812' => 'mco', 'MD03G1052300' => 'mdo', 'MD09G1162200' => 'mdo', 'MD09G1162300' => 'mdo', 'MD10G1074700' => 'mdo', 'MD11G1054400' => 'mdo', 'MD12G1073300' => 'mdo', 'MD14G1071400' => 'mdo', 'MD14G1071600' => 'mdo', 'MD17G1069300' => 'mdo', 'Medtr3g466820' => 'mtr', 'Medtr5g095180' => 'mtr', 'Medtr7g057410' => 'mtr', 'Medtr7g091590' => 'mtr', 'MELO3C009685.2' => 'cme', 'MELO3C026877.2' => 'cme', 'Migut.D00820' => 'egut', 'Migut.J01762' => 'egut', 'MSTRG.18541' => 'ama', 'MSTRG.6511' => 'ama', 'MSTRG.6512' => 'ama', 'MSTRG.6516' => 'ama', 'MSTRG.6517' => 'ama', 'Nitab4.5_0000002g0190' => 'nta', 'Nitab4.5_0000733g0020' => 'nta', 'Nitab4.5_0000733g0050' => 'nta', 'Nitab4.5_0002620g0020' => 'nta', 'Nitab4.5_0005611g0030' => 'nta', 'Nitab4.5_0005611g0040' => 'nta', 'Nn2g10322' => 'nnu', 'Nn7g36265' => 'nnu', 'Nn7g36269' => 'nnu', 'Oeu000828.1' => 'oeu', 'Oeu015568.1' => 'oeu', 'Oeu015569.1' => 'oeu', 'Oeu055223.1' => 'oeu', 'Os01g0778800' => 'osa', 'Os01g0779100' => 'osa', 'Os03g0336300' => 'osa', 'Os07g0570100' => 'osa', 'Os07g0570300' => 'osa', 'Os07g0570500' => 'osa', 'Peaxi162Scf00044g01412' => 'pax', 'Peaxi162Scf00493g00005' => 'pax', 'Peaxi162Scf00960g00119' => 'pax', 'Peaxi162Scf00960g00120' => 'pax', 'PGR004G1628' => 'pgr', 'PGR004G1973' => 'pgr', 'PGR004G1988' => 'pgr', 'PGR004G2267' => 'pgr', 'PGR102G0317' => 'pgr', 'PGSC0003DMG400027247' => 'stu', 'PGSC0003DMG401027248' => 'stu', 'PGSC0003DMG402027248' => 'stu', 'Phvul.001G133200' => 'pvu', 'Phvul.006G077500' => 'pvu', 'Potri.006G050700' => 'ptr', 'Potri.013G154600' => 'ptr', 'Pp3c10_5860' => 'ppa', 'Pp3c14_4240' => 'ppa', 'Pp3c14_4243' => 'ppa', 'Pp3c16_8340' => 'ppa', 'Pp3c1_4220' => 'ppa', 'Pp3c5_6610' => 'ppa', 'Pp3c5_8950' => 'ppa', 'PRCOL_00003896' => 'pco', 'PRCOL_00006552' => 'pco', 'Prupe.6G041800' => 'ppe', 'Prupe.6G041900' => 'ppe', 'Prupe.7G061600' => 'ppe', 'Psat0s427g0040' => 'psa', 'Psat0s475g0040' => 'psa', 'Psat0s475g0080' => 'psa', 'Psat0s475g0120' => 'psa', 'Psat0s4995g0040' => 'psa', 'Psat0s6682g0040' => 'psa', 'Psat0s6682g0080' => 'psa', 'Psat0s6868g0120' => 'psa', 'Psat1g112160' => 'psa', 'Psat1g114160' => 'psa', 'Psat1g135520' => 'psa', 'Psat2g172400' => 'psa', 'Psat3g072640' => 'psa', 'Psat3g160720' => 'psa', 'Psat4g066560' => 'psa', 'Psat5g028240' => 'psa', 'Psat5g149400' => 'psa', 'PSO339G0703' => 'pso', 'PSO339G2454' => 'pso', 'PSO384G2839' => 'pso', 'PSO384G4550' => 'pso', 'PSO384G4551' => 'pso', 'PSO478G2702' => 'pso', 'QL01p024916' => 'qlo', 'RcHm_v2.0_Chr1g0321501' => 'rch', 'RcHm_v2.0_Chr1g0322391' => 'rch', 'RcHm_v2.0_Chr1g0322401' => 'rch', 'RcHm_v2.0_Chr1g0322811' => 'rch', 'RcHm_v2.0_Chr1g0333061' => 'rch', 'RcHm_v2.0_Chr1g0333071' => 'rch', 'RcHm_v2.0_Chr1g0333081' => 'rch', 'RcHm_v2.0_Chr1g0333871' => 'rch', 'RcHm_v2.0_Chr1g0333951' => 'rch', 'RcHm_v2.0_Chr1g0334011' => 'rch', 'RcHm_v2.0_Chr1g0334021' => 'rch', 'RcHm_v2.0_Chr1g0334031' => 'rch', 'RcHm_v2.0_Chr1g0334041' => 'rch', 'RcHm_v2.0_Chr1g0335131' => 'rch', 'RcHm_v2.0_Chr1g0335141' => 'rch', 'RcHm_v2.0_Chr1g0335171' => 'rch', 'RcHm_v2.0_Chr2g0132461' => 'rch', 'RcHm_v2.0_Chr2g0145491' => 'rch', 'RcHm_v2.0_Chr2g0151411' => 'rch', 'RcHm_v2.0_Chr3g0481841' => 'rch', 'RcHm_v2.0_Chr3g0482151' => 'rch', 'RcHm_v2.0_Chr3g0482171' => 'rch', 'RcHm_v2.0_Chr3g0492731' => 'rch', 'RcHm_v2.0_Chr5g0063901' => 'rch', 'RcHm_v2.0_Chr5g0072781' => 'rch', 'RcHm_v2.0_Chr5g0072791' => 'rch', 'RcHm_v2.0_Chr5g0072801' => 'rch', 'RcHm_v2.0_Chr5g0072811' => 'rch', 'RcHm_v2.0_Chr5g0072891' => 'rch', 'RcHm_v2.0_Chr5g0072931' => 'rch', 'RcHm_v2.0_Chr5g0072951' => 'rch', 'RcHm_v2.0_Chr5g0073041' => 'rch', 'RcHm_v2.0_Chr5g0073051' => 'rch', 'RcHm_v2.0_Chr5g0073061' => 'rch', 'RcHm_v2.0_Chr5g0073071' => 'rch', 'RcHm_v2.0_Chr5g0074151' => 'rch', 'RcHm_v2.0_Chr5g0074161' => 'rch', 'RcHm_v2.0_Chr5g0074171' => 'rch', 'RcHm_v2.0_Chr6g0278561' => 'rch', 'RcHm_v2.0_Chr7g0202261' => 'rch', 'Rhsim03G0021400' => 'rsi', 'Rhsim03G0022100' => 'rsi', 'Rhsim03G0023500' => 'rsi', 'Rhsim13G0059900' => 'rsi', 'Sabra06G0035400' => 'sbr', 'Sabra13G0124500' => 'sbr', 'SalBow1G3107' => 'sbo', 'SalBow6G0410' => 'sbo', 'Sc06g0008100' => 'sci', 'Sc13g0001790' => 'sci', 'Sed0017574' => 'sed', 'Sed0019452' => 'sed', 'SEGI_02273' => 'sgi', 'SEGI_03863' => 'sgi', 'SEGI_04230' => 'sgi', 'SEGI_13690' => 'sgi', 'SEGI_13924' => 'sgi', 'SEGI_15745' => 'sgi', 'SEGI_18924' => 'sgi', 'SEGI_27991' => 'sgi', 'SEGI_30209' => 'sgi', 'SEGI_32700' => 'sgi', 'SEGI_36312' => 'sgi', 'SEGI_39007' => 'sgi', 'SGA_v2.0_scaffold20G09290' => 'sas', 'SGA_v2.0_scaffold69G23113' => 'sas', 'SHI11186' => 'shi', 'SMO239G0088' => 'smo', 'SMO337G0024' => 'smo', 'Solyc02g043860.3' => 'sly', 'Solyc04g015680.3' => 'sly', 'Solyc04g015690.4' => 'sly', 'Solyc09g055740.1' => 'sly', 'Sopen02g007490' => 'spe', 'Sopen04g007760' => 'spe', 'Sopen04g007770' => 'spe', 'Sp1g05610' => 'spa', 'Sp4g24050' => 'spa', 'Sp5g05130' => 'spa', 'Sp5g05140' => 'spa', 'TAR369G1057' => 'tar', 'TAR623G0919' => 'tar', 'TAR633G2160' => 'tar', 'TAR636G3238' => 'tar', 'THA.LOC104800786' => 'tha', 'THA.LOC104802114' => 'tha', 'THA.LOC104824443' => 'tha', 'Thecc.05G154200' => 'tca', 'Thecc.05G154400' => 'tca', 'Thecc.05G154700' => 'tca', 'Thecc.05G155200' => 'tca', 'Thecc.09G363300' => 'tca', 'Thhalv10005770m.g' => 'esa', 'Thhalv10006660m.g' => 'esa', 'Thhalv10009720m.g' => 'esa', 'Thhalv10016187m.g' => 'esa', 'TPR.G24864' => 'tpr', 'TPR.G27380' => 'tpr', 'TPR.G27384' => 'tpr', 'TPR.G29243' => 'tpr', 'TPR.G29646' => 'tpr', 'TPR.G36357' => 'tpr', 'TPR.G3704' => 'tpr', 'TPR.G3719' => 'tpr', 'TPR.G39257' => 'tpr', 'TPR.G39949' => 'tpr', 'TPR.G928' => 'tpr', 'TWI74G0219' => 'twi', 'TWI79G0222' => 'twi', 'unitig_22.g6039' => 'ugi', 'unitig_747.g21447' => 'ugi', 'unitig_747.g21448' => 'ugi', 'vmacro02881' => 'vma', 'vmacro07856' => 'vma', 'vmacro07857' => 'vma', 'vmacro07858' => 'vma', 'vmacro07859' => 'vma', 'vmacro07860' => 'vma', 'vmacro07861' => 'vma', 'vmacro22459' => 'vma', 'VMungo0540G0021' => 'vmu', 'VMungo1383G1826' => 'vmu', 'Zm00001eb151510' => 'zma', 'Zm00001eb324850' => 'zma', 'Zm00001eb369900' => 'zma', 'Zm00001eb395090' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001129', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001129' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001129', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '546', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001129' ) ), 'genes' => array( 'A01p12490' => 'bna', 'A02p38070' => 'bna', 'A02p38190' => 'bna', 'A03p17810' => 'bna', 'A03p23440' => 'bna', 'A04p03100' => 'bna', 'A05p02530' => 'bna', 'A07p23430' => 'bna', 'A08p35850' => 'bna', 'A09p15610' => 'bna', 'A09p50340' => 'bna', 'A09p66710' => 'bna', 'A10p05450' => 'bna', 'Aa31LG10G12300' => 'aar', 'Aa31LG10G12310' => 'aar', 'Aa31LG1G23800' => 'aar', 'Aa31LG1G7970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1876' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.374' => 'aag', 'Actinidia09332' => 'ach', 'Actinidia09335' => 'ach', 'Actinidia09336' => 'ach', 'Actinidia11621' => 'ach', 'Actinidia11622' => 'ach', 'Actinidia25195' => 'ach', 'Actinidia25196' => 'ach', 'Ah.04g151760' => 'amhyb', 'AL1G16920' => 'aly', 'AL2G24780' => 'aly', 'AL4G12810' => 'aly', 'AL4G12820' => 'aly', 'AL4G39880' => 'aly', 'AL4G39890' => 'aly', 'AL4G40110' => 'aly', 'AL5G39030' => 'aly', 'AL5G39040' => 'aly', 'AL5G39050' => 'aly', 'AL7G46910' => 'aly', 'AL7G53150' => 'aly', 'Aqoxy1G00256' => 'aox', 'Aqoxy2G00701' => 'aox', 'Aqoxy5G03056' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1AE9PZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2WDVD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA8THR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MP07WF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9HJFB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V41UA4' => 'arhy', 'AT1G06900' => 'ath', 'AT2G41790' => 'ath', 'AT3G57460' => 'ath', 'AT3G57465' => 'ath', 'AT3G57470' => 'ath', 'AT5G01440' => 'ath', 'ATR0020G001' => 'atr', 'ATR0332G050' => 'atr', 'ATR0332G087' => 'atr', 'ATR0332G094' => 'atr', 'ATR0693G250' => 'atr', 'ATR0967G001' => 'atr', 'ATR1127G095' => 'atr', 'Atru.chr1.1085' => 'acertr', 'Atru.chr1.2504' => 'acertr', 'Atru.chr6.462' => 'acertr', 'AUR62009732' => 'cqu', 'AUR62024444' => 'cqu', 'AUR62026034' => 'cqu', 'AUR62036212' => 'cqu', 'BcaB02g06767' => 'bca', 'BcaB02g07601' => 'bca', 'BcaB02g07602' => 'bca', 'BcaB02g08315' => 'bca', 'BcaB03g13434' => 'bca', 'BcaB04g19613' => 'bca', 'BcaC02g09940' => 'bca', 'BcaC02g12494' => 'bca', 'BcaC03g17727' => 'bca', 'BcaC05g24658' => 'bca', 'BcaC07g40376' => 'bca', 'BcaC07g42040' => 'bca', 'BcaC07g42543' => 'bca', 'BcaC07g42547' => 'bca', 'BcaC08g44840' => 'bca', 'BcaC08g44841' => 'bca', 'BcaC08g44846' => 'bca', 'BcaC09g48997' => 'bca', 'BcaNung02836' => 'bca', 'BcaNung06244' => 'bca', 'BcaNung06830' => 'bca', 'BolC1t01799H' => 'bol', 'BolC1t01800H' => 'bol', 'BolC1t04327H' => 'bol', 'BolC1t04328H' => 'bol', 'BolC2t11804H' => 'bol', 'BolC2t11808H' => 'bol', 'BolC2t11810H' => 'bol', 'BolC4t21939H' => 'bol', 'BolC4t25051H' => 'bol', 'BolC5t29275H' => 'bol', 'BolC6t37595H' => 'bol', 'BolC6t37600H' => 'bol', 'BolC6t37601H' => 'bol', 'BolC8t50901H' => 'bol', 'BolC8t52622H' => 'bol', 'BolC9t53447H' => 'bol', 'BraA02t08792Z' => 'bra', 'BraA02t08796Z' => 'bra', 'BraA04t16033Z' => 'bra', 'BraA05t19246Z' => 'bra', 'BraA08t35492Z' => 'bra', 'BraA09t40487Z' => 'bra', 'BraA09t42010Z' => 'bra', 'BraA10t42809Z' => 'bra', 'C01p18720' => 'bna', 'C01p43680' => 'bna', 'C01p43690' => 'bna', 'C02p57350' => 'bna', 'C02p57360' => 'bna', 'C03p27960' => 'bna', 'C04p02990' => 'bna', 'C04p34960' => 'bna', 'C05p05030' => 'bna', 'C06p09320' => 'bna', 'C06p24480' => 'bna', 'C06p24520' => 'bna', 'C06p24530' => 'bna', 'C08p02730' => 'bna', 'C08p33010' => 'bna', 'C08p50940' => 'bna', 'CAN.G3.33' => 'can', 'CAN.G676.66' => 'can', 'CAN.G676.67' => 'can', 'CANSAT54G2955' => 'cansat', 'CANSAT80G2109' => 'cansat', 'CARHR006570' => 'chi', 'CARHR136870' => 'chi', 'CARHR167660' => 'chi', 'CARHR167670' => 'chi', 'CARHR167690' => 'chi', 'Carub.0001s0619' => 'cru', 'Carub.0004s0428' => 'cru', 'Carub.0004s2406' => 'cru', 'Carub.0005s2430' => 'cru', 'Carub.0005s2431' => 'cru', 'Ca_08459_v3' => 'car', 'Ca_13897_v3' => 'car', 'Ca_15041_v3' => 'car', 'Ca_23248_v3' => 'car', 'Ca_28606_v3' => 'car', 'Ca_30053_v3' => 'car', 'CBR_g12082' => 'cbr', 'CBR_g27959' => 'cbr', 'CBR_g45246' => 'cbr', 'CBR_g49619' => 'cbr', 'CBR_g49621' => 'cbr', 'Cc00_g06010' => 'ccan', 'Cc00_g10010' => 'ccan', 'Cc01_g15280' => 'ccan', 'Cc03_g06630' => 'ccan', 'Cc06_g17050' => 'ccan', 'Cc06_g17060' => 'ccan', 'CDE05G3018' => 'cde', 'CDE05G3167' => 'cde', 'CDE06G0445' => 'cde', 'Cfa011826' => 'cfa', 'Cfa016822' => 'cfa', 'Cfa023906' => 'cfa', 'Ciclev10000133m.g' => 'ccl', 'Ciclev10004240m.g' => 'ccl', 'Ciclev10004250m.g' => 'ccl', 'CiPaw.09G037700' => 'cil', 'CiPaw.10G033100' => 'cil', 'CiPaw.13G064200' => 'cil', 'ClCG02G019050' => 'cla', 'ClCG10G016980' => 'cla', 'COL.COLO4_06002' => 'col', 'COL.COLO4_11207' => 'col', 'COL.COLO4_13216' => 'col', 'COL.COLO4_28264' => 'col', 'COL.COLO4_28268' => 'col', 'COL.COLO4_28275' => 'col', 'Cpa.g.sc2.304' => 'cpa', 'Cpa.g.sc2.305' => 'cpa', 'Cpa.g.sc92.47' => 'cpa', 'Cre01.g034100' => 'cre', 'Cre01.g041855' => 'cre', 'Cre09.g386113' => 'cre', 'CsaV3_3G039410' => 'csa', 'CsaV3_6G019170' => 'csa', 'CSS0010940' => 'camsi', 'CSS0019735' => 'camsi', 'DCAR_004800' => 'dca', 'DCAR_020490' => 'dca', 'Dinv00382' => 'din', 'Dinv12479' => 'din', 'Dinv28728' => 'din', 'Dinv39591' => 'din', 'Dinv39593' => 'din', 'Dinv39598' => 'din', 'Duzib093G0063' => 'dzi', 'Duzib093G0335' => 'dzi', 'Duzib093G1038' => 'dzi', 'Duzib128G1487' => 'dzi', 'Duzib168G0079' => 'dzi', 'ECA247G0490' => 'eca', 'ECA247G0660' => 'eca', 'ECA247G0911' => 'eca', 'EL10Ac3g07087' => 'bvu', 'EL10Ac7g15852' => 'bvu', 'Eucgr.A02352' => 'egr', 'Eucgr.A02354' => 'egr', 'Eucgr.A02355' => 'egr', 'Eucgr.A02357' => 'egr', 'Eucgr.A02358' => 'egr', 'Eucgr.A02359' => 'egr', 'Eucgr.B04025' => 'egr', 'Eucgr.C03112' => 'egr', 'Eucgr.H02814' => 'egr', 'FAN01G1484' => 'fan', 'FAN02G2306' => 'fan', 'FAN04G0733' => 'fan', 'FAN05G4515' => 'fan', 'FAN06G3753' => 'fan', 'FAN08G0077' => 'fan', 'FAN09G1141' => 'fan', 'FAN11G1991' => 'fan', 'FAN11G2052' => 'fan', 'FAN11G2940' => 'fan', 'FAN11G3836' => 'fan', 'FAN13G0243' => 'fan', 'FAN13G1906' => 'fan', 'FAN13G3149' => 'fan', 'FAN16G0023' => 'fan', 'FAN16G3400' => 'fan', 'FAN18G1906' => 'fan', 'FAN18G3567' => 'fan', 'FAN21G2271' => 'fan', 'FAN21G2900' => 'fan', 'FvH4_3g40361' => 'fve', 'FvH4_3g40370' => 'fve', 'FvH4_3g40391' => 'fve', 'FvH4_3g40410' => 'fve', 'FvH4_3g40411' => 'fve', 'FvH4_3g40412' => 'fve', 'FvH4_3g40413' => 'fve', 'FvH4_3g40440' => 'fve', 'FvH4_3g41040' => 'fve', 'FvH4_5g00310' => 'fve', 'FvH4_6g23690' => 'fve', 'Glyma.03G137100' => 'gma', 'Glyma.11G160300' => 'gma', 'Glyma.18G053700' => 'gma', 'Glyma.19G139800' => 'gma', 'Gohir.A01G131400' => 'ghi', 'Gohir.A01G131500' => 'ghi', 'Gohir.A03G023300' => 'ghi', 'Gohir.A08G164850' => 'ghi', 'Gohir.D01G120700' => 'ghi', 'Gohir.D03G054201' => 'ghi', 'Gohir.D03G145400' => 'ghi', 'Gohir.D07G130166' => 'ghi', 'Gohir.D08G133750' => 'ghi', 'Gohir.D09G013866' => 'ghi', 'Gohir.D09G051901' => 'ghi', 'Gohir.D10G086832' => 'ghi', 'Gohir.D11G291701' => 'ghi', 'Gorai.001G201100' => 'gra', 'Gorai.002G147300' => 'gra', 'Gorai.002G147500' => 'gra', 'Gorai.003G152500' => 'gra', 'Gorai.006G004900' => 'gra', 'Gorai.007G260700' => 'gra', 'Gorai.009G402100' => 'gra', 'Gorai.009G417200' => 'gra', 'Gorai.011G096400' => 'gra', 'Gorai.012G121300' => 'gra', 'GSVIVG01024571001' => 'vvi', 'GSVIVG01033283001' => 'vvi', 'GSVIVG01033284001' => 'vvi', 'HanXRQChr08g0230671' => 'han', 'HanXRQChr10g0289411' => 'han', 'Haze_16414' => 'cav', 'Haze_16417' => 'cav', 'Haze_16419' => 'cav', 'Haze_19863' => 'cav', 'Haze_19866' => 'cav', 'Haze_24463' => 'cav', 'Hma1.2p1_0170F.1_g075000' => 'hma', 'Hma1.2p1_1168F.1_g263180' => 'hma', 'Hma1.2p1_1168F.1_g263190' => 'hma', 'HPP92_006786' => 'vpl', 'HPP92_006787' => 'vpl', 'HPP92_006788' => 'vpl', 'HPP92_007503' => 'vpl', 'HPP92_015907' => 'vpl', 'HPP92_015909' => 'vpl', 'HPP92_015932' => 'vpl', 'HPP92_027671' => 'vpl', 'HPP92_028209' => 'vpl', 'Hund05051' => 'sun', 'Hund19150' => 'sun', 'Hund24708' => 'sun', 'Lalb_Chr01g0017291' => 'lal', 'Lalb_Chr18g0054261' => 'lal', 'Lj1g0001320' => 'lja', 'Lj2C1101T10' => 'lonja', 'Lj2C384T5' => 'lonja', 'Lj2C384T6' => 'lonja', 'Lj2P1101T48' => 'lonja', 'Lj4g0007497' => 'lja', 'Lj6g0006618' => 'lja', 'Lju124C40G7' => 'lonja', 'Lsat_1_v5_gn_4_182701' => 'lsa', 'Lsat_1_v5_gn_4_78000' => 'lsa', 'Lsat_1_v5_gn_6_8680' => 'lsa', 'Lsat_1_v5_gn_6_8700' => 'lsa', 'Lsat_1_v5_gn_7_58040' => 'lsa', 'Lsat_1_v5_gn_9_13880' => 'lsa', 'Lsat_1_v5_gn_9_28860' => 'lsa', 'Manes.02G208660' => 'mes', 'Manes.08G050900' => 'mes', 'Manes.09G021401' => 'mes', 'Manes.09G021500' => 'mes', 'Mapoly0021s0007' => 'mpo', 'Mapoly0029s0118' => 'mpo', 'MBI02_g23135_MAGBIO' => 'mbi', 'MCO11G812' => 'mco', 'MD03G1052300' => 'mdo', 'MD09G1162200' => 'mdo', 'MD09G1162300' => 'mdo', 'MD10G1074700' => 'mdo', 'MD11G1054400' => 'mdo', 'MD12G1073300' => 'mdo', 'MD14G1071400' => 'mdo', 'MD14G1071600' => 'mdo', 'MD17G1069300' => 'mdo', 'Medtr3g466820' => 'mtr', 'Medtr5g095180' => 'mtr', 'Medtr7g057410' => 'mtr', 'Medtr7g091590' => 'mtr', 'MELO3C009685.2' => 'cme', 'MELO3C026877.2' => 'cme', 'Migut.D00820' => 'egut', 'Migut.J01762' => 'egut', 'MSTRG.18541' => 'ama', 'MSTRG.6511' => 'ama', 'MSTRG.6512' => 'ama', 'MSTRG.6516' => 'ama', 'MSTRG.6517' => 'ama', 'Nitab4.5_0000002g0190' => 'nta', 'Nitab4.5_0000733g0020' => 'nta', 'Nitab4.5_0000733g0050' => 'nta', 'Nitab4.5_0002620g0020' => 'nta', 'Nitab4.5_0005611g0030' => 'nta', 'Nitab4.5_0005611g0040' => 'nta', 'Nn2g10322' => 'nnu', 'Nn7g36265' => 'nnu', 'Nn7g36269' => 'nnu', 'Oeu000828.1' => 'oeu', 'Oeu015568.1' => 'oeu', 'Oeu015569.1' => 'oeu', 'Oeu055223.1' => 'oeu', 'Os01g0778800' => 'osa', 'Os01g0779100' => 'osa', 'Os03g0336300' => 'osa', 'Os07g0570100' => 'osa', 'Os07g0570300' => 'osa', 'Os07g0570500' => 'osa', 'Peaxi162Scf00044g01412' => 'pax', 'Peaxi162Scf00493g00005' => 'pax', 'Peaxi162Scf00960g00119' => 'pax', 'Peaxi162Scf00960g00120' => 'pax', 'PGR004G1628' => 'pgr', 'PGR004G1973' => 'pgr', 'PGR004G1988' => 'pgr', 'PGR004G2267' => 'pgr', 'PGR102G0317' => 'pgr', 'PGSC0003DMG400027247' => 'stu', 'PGSC0003DMG401027248' => 'stu', 'PGSC0003DMG402027248' => 'stu', 'Phvul.001G133200' => 'pvu', 'Phvul.006G077500' => 'pvu', 'Potri.006G050700' => 'ptr', 'Potri.013G154600' => 'ptr', 'Pp3c10_5860' => 'ppa', 'Pp3c14_4240' => 'ppa', 'Pp3c14_4243' => 'ppa', 'Pp3c16_8340' => 'ppa', 'Pp3c1_4220' => 'ppa', 'Pp3c5_6610' => 'ppa', 'Pp3c5_8950' => 'ppa', 'PRCOL_00003896' => 'pco', 'PRCOL_00006552' => 'pco', 'Prupe.6G041800' => 'ppe', 'Prupe.6G041900' => 'ppe', 'Prupe.7G061600' => 'ppe', 'Psat0s427g0040' => 'psa', 'Psat0s475g0040' => 'psa', 'Psat0s475g0080' => 'psa', 'Psat0s475g0120' => 'psa', 'Psat0s4995g0040' => 'psa', 'Psat0s6682g0040' => 'psa', 'Psat0s6682g0080' => 'psa', 'Psat0s6868g0120' => 'psa', 'Psat1g112160' => 'psa', 'Psat1g114160' => 'psa', 'Psat1g135520' => 'psa', 'Psat2g172400' => 'psa', 'Psat3g072640' => 'psa', 'Psat3g160720' => 'psa', 'Psat4g066560' => 'psa', 'Psat5g028240' => 'psa', 'Psat5g149400' => 'psa', 'PSO339G0703' => 'pso', 'PSO339G2454' => 'pso', 'PSO384G2839' => 'pso', 'PSO384G4550' => 'pso', 'PSO384G4551' => 'pso', 'PSO478G2702' => 'pso', 'QL01p024916' => 'qlo', 'RcHm_v2.0_Chr1g0321501' => 'rch', 'RcHm_v2.0_Chr1g0322391' => 'rch', 'RcHm_v2.0_Chr1g0322401' => 'rch', 'RcHm_v2.0_Chr1g0322811' => 'rch', 'RcHm_v2.0_Chr1g0333061' => 'rch', 'RcHm_v2.0_Chr1g0333071' => 'rch', 'RcHm_v2.0_Chr1g0333081' => 'rch', 'RcHm_v2.0_Chr1g0333871' => 'rch', 'RcHm_v2.0_Chr1g0333951' => 'rch', 'RcHm_v2.0_Chr1g0334011' => 'rch', 'RcHm_v2.0_Chr1g0334021' => 'rch', 'RcHm_v2.0_Chr1g0334031' => 'rch', 'RcHm_v2.0_Chr1g0334041' => 'rch', 'RcHm_v2.0_Chr1g0335131' => 'rch', 'RcHm_v2.0_Chr1g0335141' => 'rch', 'RcHm_v2.0_Chr1g0335171' => 'rch', 'RcHm_v2.0_Chr2g0132461' => 'rch', 'RcHm_v2.0_Chr2g0145491' => 'rch', 'RcHm_v2.0_Chr2g0151411' => 'rch', 'RcHm_v2.0_Chr3g0481841' => 'rch', 'RcHm_v2.0_Chr3g0482151' => 'rch', 'RcHm_v2.0_Chr3g0482171' => 'rch', 'RcHm_v2.0_Chr3g0492731' => 'rch', 'RcHm_v2.0_Chr5g0063901' => 'rch', 'RcHm_v2.0_Chr5g0072781' => 'rch', 'RcHm_v2.0_Chr5g0072791' => 'rch', 'RcHm_v2.0_Chr5g0072801' => 'rch', 'RcHm_v2.0_Chr5g0072811' => 'rch', 'RcHm_v2.0_Chr5g0072891' => 'rch', 'RcHm_v2.0_Chr5g0072931' => 'rch', 'RcHm_v2.0_Chr5g0072951' => 'rch', 'RcHm_v2.0_Chr5g0073041' => 'rch', 'RcHm_v2.0_Chr5g0073051' => 'rch', 'RcHm_v2.0_Chr5g0073061' => 'rch', 'RcHm_v2.0_Chr5g0073071' => 'rch', 'RcHm_v2.0_Chr5g0074151' => 'rch', 'RcHm_v2.0_Chr5g0074161' => 'rch', 'RcHm_v2.0_Chr5g0074171' => 'rch', 'RcHm_v2.0_Chr6g0278561' => 'rch', 'RcHm_v2.0_Chr7g0202261' => 'rch', 'Rhsim03G0021400' => 'rsi', 'Rhsim03G0022100' => 'rsi', 'Rhsim03G0023500' => 'rsi', 'Rhsim13G0059900' => 'rsi', 'Sabra06G0035400' => 'sbr', 'Sabra13G0124500' => 'sbr', 'SalBow1G3107' => 'sbo', 'SalBow6G0410' => 'sbo', 'Sc06g0008100' => 'sci', 'Sc13g0001790' => 'sci', 'Sed0017574' => 'sed', 'Sed0019452' => 'sed', 'SEGI_02273' => 'sgi', 'SEGI_03863' => 'sgi', 'SEGI_04230' => 'sgi', 'SEGI_13690' => 'sgi', 'SEGI_13924' => 'sgi', 'SEGI_15745' => 'sgi', 'SEGI_18924' => 'sgi', 'SEGI_27991' => 'sgi', 'SEGI_30209' => 'sgi', 'SEGI_32700' => 'sgi', 'SEGI_36312' => 'sgi', 'SEGI_39007' => 'sgi', 'SGA_v2.0_scaffold20G09290' => 'sas', 'SGA_v2.0_scaffold69G23113' => 'sas', 'SHI11186' => 'shi', 'SMO239G0088' => 'smo', 'SMO337G0024' => 'smo', 'Solyc02g043860.3' => 'sly', 'Solyc04g015680.3' => 'sly', 'Solyc04g015690.4' => 'sly', 'Solyc09g055740.1' => 'sly', 'Sopen02g007490' => 'spe', 'Sopen04g007760' => 'spe', 'Sopen04g007770' => 'spe', 'Sp1g05610' => 'spa', 'Sp4g24050' => 'spa', 'Sp5g05130' => 'spa', 'Sp5g05140' => 'spa', 'TAR369G1057' => 'tar', 'TAR623G0919' => 'tar', 'TAR633G2160' => 'tar', 'TAR636G3238' => 'tar', 'THA.LOC104800786' => 'tha', 'THA.LOC104802114' => 'tha', 'THA.LOC104824443' => 'tha', 'Thecc.05G154200' => 'tca', 'Thecc.05G154400' => 'tca', 'Thecc.05G154700' => 'tca', 'Thecc.05G155200' => 'tca', 'Thecc.09G363300' => 'tca', 'Thhalv10005770m.g' => 'esa', 'Thhalv10006660m.g' => 'esa', 'Thhalv10009720m.g' => 'esa', 'Thhalv10016187m.g' => 'esa', 'TPR.G24864' => 'tpr', 'TPR.G27380' => 'tpr', 'TPR.G27384' => 'tpr', 'TPR.G29243' => 'tpr', 'TPR.G29646' => 'tpr', 'TPR.G36357' => 'tpr', 'TPR.G3704' => 'tpr', 'TPR.G3719' => 'tpr', 'TPR.G39257' => 'tpr', 'TPR.G39949' => 'tpr', 'TPR.G928' => 'tpr', 'TWI74G0219' => 'twi', 'TWI79G0222' => 'twi', 'unitig_22.g6039' => 'ugi', 'unitig_747.g21447' => 'ugi', 'unitig_747.g21448' => 'ugi', 'vmacro02881' => 'vma', 'vmacro07856' => 'vma', 'vmacro07857' => 'vma', 'vmacro07858' => 'vma', 'vmacro07859' => 'vma', 'vmacro07860' => 'vma', 'vmacro07861' => 'vma', 'vmacro22459' => 'vma', 'VMungo0540G0021' => 'vmu', 'VMungo1383G1826' => 'vmu', 'Zm00001eb151510' => 'zma', 'Zm00001eb324850' => 'zma', 'Zm00001eb369900' => 'zma', 'Zm00001eb395090' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001129' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001129' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001129' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001129' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151