Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 2.9e-310 1067.8 549 100.0
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.1e-147 527.7 611 53.4
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 3.8e-145 519.2 644 51.2
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 3.0e-142 509.6 643 50.9
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 1.1e-141 507.7 643 50.4
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 1.7e-129 467.2 666 46.8
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.6e-127 459.1 662 45.3
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 2.3e-126 456.8 512 51.4
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 2.3e-126 456.8 567 49.0
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 8.2e-124 448.4 647 45.7
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 1.2e-122 444.5 669 44.2
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 2.6e-122 443.4 671 42.8
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 1.3e-121 441.0 632 46.2
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 1.7e-121 440.7 665 43.6
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 3.8e-121 439.5 632 46.0
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 1.1e-120 438.0 613 45.2
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 3.2e-120 436.4 658 43.3
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 4.2e-120 436.0 669 42.6
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 9.3e-120 434.9 674 44.5
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 2.1e-119 433.7 655 43.2
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 2.7e-119 433.3 673 44.3
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 2.7e-119 433.3 632 45.4
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 4.6e-119 432.6 562 46.4
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 4.6e-119 432.6 602 46.2
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 7.9e-119 431.8 589 46.9
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 1.0e-118 431.4 666 44.0
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 3.0e-118 429.9 648 45.1
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 3.0e-118 429.9 673 42.8
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 3.9e-118 429.5 656 43.4
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 5.1e-118 429.1 689 42.5
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 6.7e-118 428.7 662 43.1
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 8.7e-118 428.3 665 42.9
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.5e-117 427.6 664 42.8
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.9e-117 427.2 689 42.5
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 1.9e-117 427.2 639 42.3
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 5.7e-117 425.6 633 42.7
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 7.4e-117 425.2 689 42.4
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 1.3e-116 424.5 643 41.8
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 2.2e-116 423.7 665 43.0
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 2.8e-116 423.3 661 42.8
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 3.7e-116 422.9 649 43.9
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 6.3e-116 422.2 687 42.1
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 6.3e-116 422.2 633 42.7
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 8.2e-116 421.8 649 43.9
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 8.2e-116 421.8 639 41.8
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 5.3e-115 419.1 640 41.7
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 5.3e-115 419.1 592 44.1
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 6.9e-115 418.7 661 42.4
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 9.0e-115 418.3 634 42.9
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 9.0e-115 418.3 635 42.8
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 9.0e-115 418.3 665 42.1
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 1.2e-114 417.9 583 44.8
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 1.2e-114 417.9 664 42.8
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 1.2e-114 417.9 635 43.1
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 1.5e-114 417.5 631 42.6
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 4.5e-114 416.0 499 50.3
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 7.7e-114 415.2 666 43.4
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 7.7e-114 415.2 579 44.0
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 1.0e-113 414.8 661 41.9
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 1.7e-113 414.1 615 44.4
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 2.2e-113 413.7 545 47.5
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.2e-113 413.7 601 43.9
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.2e-113 413.7 594 44.1
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 6.5e-113 412.1 594 44.1
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 2.5e-112 410.2 678 41.0
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 1.6e-111 407.5 681 42.0
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.7e-111 406.8 674 41.1
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 3.6e-111 406.4 647 42.3
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 3.6e-111 406.4 576 44.3
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 3.0e-110 403.3 616 42.7
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 3.9e-110 402.9 676 40.7
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 5.1e-110 402.5 559 44.2
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 2.0e-109 400.6 668 42.7
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 8.2e-108 395.2 611 42.9
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 3.1e-107 393.3 663 39.7
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 5.9e-106 389.0 684 39.6
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 3.8e-105 386.3 656 39.8
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.1e-104 384.8 583 42.2
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 1.4e-104 384.4 657 39.1
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 1.9e-104 384.0 657 39.1
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 4.2e-104 382.9 598 41.3
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 4.2e-104 382.9 657 39.1
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 7.2e-104 382.1 659 39.5
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 7.2e-104 382.1 660 39.5
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 3.6e-103 379.8 665 39.4
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 3.9e-102 376.3 706 38.4
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 3.9e-102 376.3 667 39.1
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 8.8e-102 375.2 597 40.4
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 1.5e-101 374.4 656 39.6
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 3.3e-101 373.2 603 40.5
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 9.7e-101 371.7 573 42.2
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 7.0e-99 365.5 619 40.1
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 3.5e-98 363.2 604 41.1
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 3.5e-98 363.2 613 42.1
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.9e-97 360.1 631 39.0
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 8.8e-94 348.6 533 44.3
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 3.3e-93 346.7 552 42.9
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 1.7e-92 344.4 669 38.1
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 1.7e-92 344.4 611 39.6
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 1.3e-89 334.7 625 38.6
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 7.7e-82 308.9 611 36.3
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 3.1e-75 287.0 580 34.1
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 1.6e-74 284.6 446 43.3
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 1.7e-68 264.6 636 32.4
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 4.9e-68 263.1 307 47.6
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.9e-68 263.1 461 41.4
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 8.3e-68 262.3 633 32.2
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 5.9e-66 256.1 281 50.2
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 2.5e-64 250.8 635 31.5
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 8.9e-62 242.3 352 47.2
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 3.7e-60 236.9 520 33.7
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.5e-56 224.2 347 42.1
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 1.4e-51 208.4 625 27.8
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 6.4e-44 183.0 146 59.6
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 9.2e-43 179.1 438 33.3
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 5.1e-41 173.3 226 47.8
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 9.6e-40 169.1 244 43.9
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 7.1e-35 152.9 248 40.3
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 9.3e-35 152.5 146 60.3
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 2.1e-34 151.4 137 57.7
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 1.3e-33 148.7 157 51.6
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 2.8e-31 141.0 199 44.2
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 4.0e-30 137.1 148 50.7
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 2.6e-29 134.4 103 62.1
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 4.4e-29 133.7 239 38.5
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 4.9e-28 130.2 151 49.0
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 8.4e-28 129.4 152 49.3
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.9e-24 118.2 223 36.3
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 4.6e-18 97.1 685 22.3
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 7.9e-18 96.3 222 34.7
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 1.3e-17 95.5 261 27.6
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 5.8e-13 80.1 76 55.3
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 1.9e-11 75.1 136 36.8
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 7.1e-11 73.2 98 42.9
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 3.9e-09 67.4 43 69.8
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 8.2e-07 59.7 110 36.4
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 4.1e-06 57.4 40 62.5


User provided reference genes

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