Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 1.5e-248 862.4 452 100.0
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 3.8e-135 485.7 462 60.6
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 1.0e-132 477.6 474 59.1
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 3.8e-127 459.1 463 58.7
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 6.3e-122 441.8 466 55.4
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 2.2e-119 433.3 478 54.2
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 5.0e-119 432.2 488 54.3
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 6.5e-119 431.8 490 52.2
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 1.6e-117 427.2 487 52.8
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 2.7e-117 426.4 472 53.8
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 1.0e-116 424.5 468 53.8
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 1.0e-116 424.5 480 53.8
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.0e-116 424.5 480 53.1
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 1.8e-116 423.7 469 55.2
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 1.1e-115 421.0 466 54.3
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 2.0e-115 420.2 492 52.6
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 2.6e-115 419.9 514 51.6
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 5.7e-115 418.7 469 54.2
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 5.7e-115 418.7 469 54.4
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 1.3e-114 417.5 491 53.0
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.7e-114 417.2 483 52.2
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 1.7e-114 417.2 487 53.4
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 2.2e-114 416.8 471 53.3
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 8.2e-114 414.8 466 53.2
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 4.1e-113 412.5 486 51.9
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 4.1e-113 412.5 496 51.4
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 2.0e-112 410.2 489 50.9
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 5.9e-112 408.7 468 53.8
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 5.9e-112 408.7 480 52.5
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 7.7e-112 408.3 491 53.2
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 7.7e-112 408.3 491 53.2
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 7.7e-112 408.3 465 53.8
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 7.7e-112 408.3 469 52.9
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 1.0e-111 407.9 463 51.8
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 8.5e-111 404.8 491 51.5
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 1.1e-110 404.4 482 51.0
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 1.1e-110 404.4 469 52.7
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 3.2e-110 402.9 466 53.0
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 4.2e-110 402.5 491 51.5
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 4.2e-110 402.5 470 52.6
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 5.5e-110 402.1 479 51.1
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 5.5e-110 402.1 481 52.8
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 9.4e-110 401.4 483 51.8
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 9.4e-110 401.4 487 53.2
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 1.6e-109 400.6 496 51.4
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 1.6e-109 400.6 508 50.2
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 2.1e-109 400.2 507 50.5
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 8.0e-109 398.3 483 51.6
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 1.4e-108 397.5 468 51.7
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 1.8e-108 397.1 485 54.2
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 2.3e-108 396.7 481 52.4
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 2.3e-108 396.7 481 52.4
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 4.0e-108 396.0 473 51.4
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 6.7e-108 395.2 489 53.8
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 1.2e-107 394.4 482 51.0
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 1.2e-107 394.4 466 52.8
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 1.5e-107 394.0 487 51.5
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 2.0e-107 393.7 483 50.9
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 5.7e-107 392.1 482 50.0
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 7.5e-107 391.7 467 51.4
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 7.5e-107 391.7 483 52.0
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 9.7e-107 391.3 463 51.6
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 9.7e-107 391.3 491 49.7
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 2.8e-106 389.8 459 51.6
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 3.7e-106 389.4 494 50.6
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 2.4e-105 386.7 478 52.5
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 4.1e-105 386.0 475 50.1
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 5.3e-105 385.6 470 51.5
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 3.5e-104 382.9 483 49.5
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 5.9e-104 382.1 467 49.7
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 5.9e-104 382.1 495 47.9
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 5.9e-104 382.1 486 48.6
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 1.0e-103 381.3 486 48.6
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 1.0e-103 381.3 481 51.1
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 1.7e-103 380.6 466 49.8
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 5.0e-103 379.0 466 49.6
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 5.0e-103 379.0 467 49.7
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 5.0e-103 379.0 480 48.5
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 5.0e-103 379.0 471 50.7
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 5.0e-103 379.0 474 50.2
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 6.5e-103 378.6 488 48.4
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 1.5e-102 377.5 489 47.4
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 5.5e-102 375.6 483 47.6
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 9.4e-102 374.8 471 50.5
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 4.7e-101 372.5 476 50.0
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 2.3e-100 370.2 490 46.7
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 4.0e-100 369.4 446 50.7
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 6.8e-100 368.6 518 46.3
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 4.4e-99 365.9 483 49.5
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 2.2e-98 363.6 480 48.8
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 1.0e-95 354.8 443 50.6
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 2.8e-90 336.7 477 46.5
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 1.7e-82 310.8 453 45.5
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 5.0e-79 299.3 540 40.7
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 1.1e-76 291.6 546 39.4
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 2.2e-74 283.9 570 36.8
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 2.9e-74 283.5 407 46.2
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 2.5e-70 270.4 249 60.2
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 4.7e-69 266.2 405 44.7
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 8.6e-63 245.4 460 38.3
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 7.6e-59 232.3 214 59.8
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 2.7e-56 223.8 242 55.4
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.7e-55 221.1 464 35.3
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 1.5e-54 218.0 571 31.9
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 7.9e-40 169.1 275 43.6
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 9.6e-38 162.2 271 42.1
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 7.1e-33 146.0 171 49.7
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 7.1e-33 146.0 220 46.4
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 6.7e-31 139.4 124 57.3
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 5.8e-27 126.3 142 46.5
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 6.3e-21 106.3 68 79.4
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 1.1e-20 105.5 112 47.3
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.8e-20 104.8 152 47.4
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 4.1e-20 103.6 85 62.4
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 1.5e-19 101.7 135 43.7
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.6e-19 100.9 171 43.3
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 3.4e-19 100.5 68 72.1
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 5.0e-18 96.7 73 67.1
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 2.5e-17 94.4 136 46.3
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 7.9e-16 89.4 83 56.6
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 2.0e-11 74.7 164 31.7
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.2e-10 71.2 74 45.9
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 1.9e-09 68.2 79 41.8
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 7.2e-09 66.2 167 29.9
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 7.2e-09 66.2 167 30.5
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 1.4e-07 62.0 167 29.3


User provided reference genes

Program Settings